Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:88402068-94292572

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213 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pregq4 17 57227447 to 93199751 35972304 QTL pregnancy QTL 4
Hbnr3 17 73800656 to 93199751 19399095 QTL Heligmosomoides bakeri nematode resistance 3
Aaj4 17 74282094 to 90087842 15805748 QTL anxiety in A/J 4
Axtq3 17 74282094 to 90087842 15805748 QTL anxiety QTL 3
Tssr149805 17 88403475 to 88403489 14 - TSS region transcription start site region 149805
Cpgi9639 17 88405286 to 88405477 191 CpG island CpG island 9639
Cpgi9640 17 88440192 to 88441966 1774 CpG island CpG island 9640
Foxn2 17 88440712 to 88490533 49821 + protein coding gene forkhead box N2
Tssr146228 17 88440714 to 88440741 27 + TSS region transcription start site region 146228
Tssr146229 17 88440742 to 88440787 45 + TSS region transcription start site region 146229
Tssr146230 17 88441071 to 88441091 20 + TSS region transcription start site region 146230
Tssr146231 17 88441524 to 88441558 34 + TSS region transcription start site region 146231
Tssr149806 17 88441820 to 88441850 30 - TSS region transcription start site region 149806
Tssr146232 17 88479268 to 88479281 13 + TSS region transcription start site region 146232
Cpgi9641 17 88486451 to 88486848 397 CpG island CpG island 9641
Cpgi9642 17 88529663 to 88530636 973 CpG island CpG island 9642
Tssr146233 17 88530113 to 88530142 29 + TSS region transcription start site region 146233
Ppp1r21 17 88530124 to 88588367 58243 + protein coding gene protein phosphatase 1, regulatory subunit 21
Tssr146234 17 88530149 to 88530161 12 + TSS region transcription start site region 146234
Tssr146235 17 88530211 to 88530234 23 + TSS region transcription start site region 146235
Tssr146236 17 88530252 to 88530273 21 + TSS region transcription start site region 146236
Tssr146237 17 88530288 to 88530297 9 + TSS region transcription start site region 146237
Gm38109 17 88533027 to 88533207 180 + unclassified gene predicted gene, 38109
Tssr146238 17 88580373 to 88580389 16 + TSS region transcription start site region 146238
Tssr146239 17 88580395 to 88580407 12 + TSS region transcription start site region 146239
Tssr146240 17 88581959 to 88581974 15 + TSS region transcription start site region 146240
Tssr5230 17 88583682 to 88583725 43 + TSS region transcription start site region 5230
Cpgi9643 17 88596994 to 88597383 389 CpG island CpG island 9643
Tssr146241 17 88597619 to 88597628 9 + TSS region transcription start site region 146241
Ston1 17 88597635 to 88645724 48089 + protein coding gene stonin 1
Tssr146242 17 88597663 to 88597704 41 + TSS region transcription start site region 146242
Cpgi9644 17 88597726 to 88598093 367 CpG island CpG island 9644
Tssr149807 17 88599012 to 88599057 45 - TSS region transcription start site region 149807
Gm9406 17 88607870 to 88608544 674 - pseudogene predicted gene 9406
Gm31704 17 88616493 to 88626394 9901 - lncRNA gene predicted gene, 31704
Tssr149808 17 88625492 to 88625521 29 - TSS region transcription start site region 149808
Tssr146243 17 88626530 to 88626548 18 + TSS region transcription start site region 146243
Tssr146244 17 88626549 to 88626566 17 + TSS region transcription start site region 146244
Tssr146245 17 88626569 to 88626604 35 + TSS region transcription start site region 146245
Tssr146246 17 88626747 to 88626775 28 + TSS region transcription start site region 146246
Tssr146247 17 88627359 to 88627434 75 + TSS region transcription start site region 146247
Tssr146248 17 88627438 to 88627484 46 + TSS region transcription start site region 146248
Gm31903 17 88653029 to 88654062 1033 - lncRNA gene predicted gene, 31903
Gm38460 17 88653861 to 88662686 8825 + lncRNA gene predicted gene, 38460
Gm50056 17 88662406 to 88664765 2359 - lincRNA gene predicted gene, 50056
Cpgi9645 17 88668493 to 88668775 282 CpG island CpG island 9645
Tssr146249 17 88668643 to 88668654 11 + TSS region transcription start site region 146249
Gtf2a1l 17 88668660 to 88715152 46492 + protein coding gene general transcription factor IIA, 1-like
Tssr146250 17 88668662 to 88668701 39 + TSS region transcription start site region 146250
Lhcgr 17 88716861 to 88792059 75198 - protein coding gene luteinizing hormone/choriogonadotropin receptor
Cpgi9646 17 88753382 to 88753962 580 CpG island CpG island 9646
Cpgi9647 17 88754883 to 88755427 544 CpG island CpG island 9647
Cpgi9648 17 88791720 to 88792043 323 CpG island CpG island 9648
Tssr149809 17 88791978 to 88791996 18 - TSS region transcription start site region 149809
Tssr149810 17 88791999 to 88792000 1 - TSS region transcription start site region 149810
Tssr149811 17 88792007 to 88792022 15 - TSS region transcription start site region 149811
Gm9407 17 88856233 to 88856622 389 - pseudogene predicted gene 9407
Marcksl1-ps2 17 88982497 to 88983100 603 - pseudogene MARCKS-like 1, pseudogene 2
Fshr 17 88984952 to 89200675 215723 - protein coding gene follicle stimulating hormone receptor
Tssr5231 17 89099962 to 89099974 12 + TSS region transcription start site region 5231
Tssr149812 17 89200684 to 89200697 13 - TSS region transcription start site region 149812
Tssr149813 17 89200703 to 89200719 16 - TSS region transcription start site region 149813
4933400B14Rik 17 89320227 to 89327333 7106 + lncRNA gene RIKEN cDNA 4933400B14 gene
Gm4719 17 89379241 to 89384993 5752 + lncRNA gene predicted gene 4719
Gm50061 17 89701897 to 89752526 50629 - lincRNA gene predicted gene, 50061
Tssr146251 17 89718097 to 89718098 1 + TSS region transcription start site region 146251
Gm10184 17 89908475 to 89910447 1972 - pseudogene predicted pseudogene 10184
Tssr149814 17 89910439 to 89910446 7 - TSS region transcription start site region 149814
Gm41653 17 89958752 to 89976632 17880 - lncRNA gene predicted gene, 41653
Nrxn1 17 90033631 to 91093071 1059440 - protein coding gene neurexin I
Tssr149815 17 90035842 to 90035863 21 - TSS region transcription start site region 149815
Tssr149816 17 90036279 to 90036290 11 - TSS region transcription start site region 149816
Tssr149817 17 90036433 to 90036436 3 - TSS region transcription start site region 149817
Tssr149818 17 90036684 to 90036713 29 - TSS region transcription start site region 149818
Tssr149819 17 90036720 to 90036741 21 - TSS region transcription start site region 149819
Tssr149820 17 90036744 to 90036758 14 - TSS region transcription start site region 149820
Tssr149821 17 90036775 to 90036786 11 - TSS region transcription start site region 149821
Tssr149822 17 90036807 to 90036818 11 - TSS region transcription start site region 149822
Tssr146252 17 90036895 to 90036901 6 + TSS region transcription start site region 146252
Tssr149823 17 90037141 to 90037164 23 - TSS region transcription start site region 149823
Tssr149824 17 90037188 to 90037204 16 - TSS region transcription start site region 149824
Tssr149825 17 90037209 to 90037231 22 - TSS region transcription start site region 149825
Tssr149826 17 90037285 to 90037300 15 - TSS region transcription start site region 149826
Tssr146253 17 90048080 to 90048084 4 + TSS region transcription start site region 146253
Tssr5232 17 90075119 to 90075126 7 + TSS region transcription start site region 5232
Nilac11 17 90087704 to 90087842 138 QTL nicotine induced locomotor activity 11
D17Mit221 17 90087704 to 90087842 138 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 221
Nhdlq3 17 90087704 to 90087842 138 QTL non-HDL QTL 3
Tssr149827 17 90088194 to 90088227 33 - TSS region transcription start site region 149827
Tssr149828 17 90088279 to 90088320 41 - TSS region transcription start site region 149828
Tssr149829 17 90088322 to 90088341 19 - TSS region transcription start site region 149829
Tssr149830 17 90088343 to 90088373 30 - TSS region transcription start site region 149830
Tssr146254 17 90088461 to 90088508 47 + TSS region transcription start site region 146254
Tssr149831 17 90144032 to 90144054 22 - TSS region transcription start site region 149831
Tssr149832 17 90144056 to 90144068 12 - TSS region transcription start site region 149832
2900054C15Rik 17 90173140 to 90174015 875 unclassified gene RIKEN cDNA 2900054C15 gene
Tssr149833 17 90178568 to 90178573 5 - TSS region transcription start site region 149833
Tssr146255 17 90179294 to 90179296 2 + TSS region transcription start site region 146255
Gm24510 17 90262552 to 90262645 93 + miRNA gene predicted gene, 24510
Tssr149834 17 90292589 to 90292591 2 - TSS region transcription start site region 149834
Tssr149835 17 90313287 to 90313299 12 - TSS region transcription start site region 149835
Tssr149836 17 90346597 to 90346601 4 - TSS region transcription start site region 149836
Tssr149837 17 90376025 to 90376031 6 - TSS region transcription start site region 149837
Tssr149838 17 90400359 to 90400367 8 - TSS region transcription start site region 149838
Tssr149839 17 90422332 to 90422343 11 - TSS region transcription start site region 149839
Tssr149840 17 90429250 to 90429256 6 - TSS region transcription start site region 149840
Tssr149841 17 90445094 to 90445103 9 - TSS region transcription start site region 149841
Tssr149842 17 90447650 to 90447659 9 - TSS region transcription start site region 149842
Tssr149843 17 90448706 to 90448713 7 - TSS region transcription start site region 149843
Cpgi9649 17 90454353 to 90456144 1791 CpG island CpG island 9649
Gm10493 17 90454889 to 90455498 609 + pseudogene predicted gene 10493
Gm32337 17 90455694 to 90465216 9522 + lncRNA gene predicted gene, 32337
Tssr149844 17 90455943 to 90456026 83 - TSS region transcription start site region 149844
Tssr149845 17 90456030 to 90456049 19 - TSS region transcription start site region 149845
Gm19815 17 90567423 to 90567757 334 - pseudogene predicted gene, 19815
Cpgi9650 17 90567756 to 90567907 151 CpG island CpG island 9650
Tssr149846 17 90599335 to 90599339 4 - TSS region transcription start site region 149846
Tssr149847 17 90603558 to 90603566 8 - TSS region transcription start site region 149847
Tssr149848 17 90606898 to 90606916 18 - TSS region transcription start site region 149848
Tssr149849 17 90607071 to 90607083 12 - TSS region transcription start site region 149849
Tssr149850 17 90607113 to 90607118 5 - TSS region transcription start site region 149850
Tssr149851 17 90611927 to 90611969 42 - TSS region transcription start site region 149851
Tssr149852 17 90622376 to 90622407 31 - TSS region transcription start site region 149852
Cpgi9651 17 90623418 to 90623679 261 CpG island CpG island 9651
Tssr149853 17 90658045 to 90658052 7 - TSS region transcription start site region 149853
Tssr149854 17 90747206 to 90747217 11 - TSS region transcription start site region 149854
C030011I16Rik 17 90764304 to 90765484 1180 unclassified gene RIKEN cDNA C030011I16 gene
Tssr149855 17 90789918 to 90789921 3 - TSS region transcription start site region 149855
Gm20491 17 90792442 to 90793476 1034 - pseudogene predicted gene 20491
Tssr149856 17 90798122 to 90798126 4 - TSS region transcription start site region 149856
Tssr149857 17 90800584 to 90800588 4 - TSS region transcription start site region 149857
9330164J24Rik 17 90800970 to 90803287 2317 unclassified gene RIKEN cDNA 9330164J24 gene
Tssr149858 17 90834235 to 90834240 5 - TSS region transcription start site region 149858
D17Mit244 17 90854524 to 90854645 121 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 244
4930480K15Rik 17 90861169 to 90867102 5933 + lncRNA gene RIKEN cDNA 4930480K15 gene
Tssr149859 17 90868022 to 90868025 3 - TSS region transcription start site region 149859
2900084O13Rik 17 90878110 to 90879367 1257 unclassified gene RIKEN cDNA 2900084O13 gene
Tssr149860 17 90958894 to 90958905 11 - TSS region transcription start site region 149860
Tssr149861 17 90980320 to 90980323 3 - TSS region transcription start site region 149861
Tssr149862 17 90992560 to 90992566 6 - TSS region transcription start site region 149862
Tssr149863 17 90995538 to 90995543 5 - TSS region transcription start site region 149863
Tssr149864 17 90995551 to 90995594 43 - TSS region transcription start site region 149864
Tssr149865 17 91024674 to 91024677 3 - TSS region transcription start site region 149865
9330159H11Rik 17 91025047 to 91038000 12953 - lncRNA gene RIKEN cDNA 9330159H11 gene
D17Mit96 17 91047347 to 91047495 148 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 96
D17Mit96.2 17 91047467 to 91047597 130 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 96.2
Tssr149866 17 91057369 to 91057372 3 - TSS region transcription start site region 149866
Tssr149867 17 91065198 to 91065201 3 - TSS region transcription start site region 149867
Cpgi9652 17 91087727 to 91089199 1472 CpG island CpG island 9652
Tssr146256 17 91088212 to 91088215 3 + TSS region transcription start site region 146256
Gm47307 17 91088406 to 91088550 144 + miRNA gene predicted gene, 47307
Gm10308 17 91088493 to 91089391 898 + protein coding gene predicted gene 10308
Tssr149868 17 91088823 to 91088858 35 - TSS region transcription start site region 149868
Tssr146257 17 91088852 to 91088885 33 + TSS region transcription start site region 146257
Tssr149869 17 91088985 to 91089014 29 - TSS region transcription start site region 149869
Cpgi9653 17 91092629 to 91092969 340 CpG island CpG island 9653
Tssr149870 17 91092715 to 91092822 107 - TSS region transcription start site region 149870
Tssr149871 17 91092823 to 91092858 35 - TSS region transcription start site region 149871
Tssr149872 17 91092860 to 91092877 17 - TSS region transcription start site region 149872
Tssr149873 17 91092984 to 91092995 11 - TSS region transcription start site region 149873
Tssr149874 17 91093018 to 91093029 11 - TSS region transcription start site region 149874
Tssr149875 17 91093070 to 91093077 7 - TSS region transcription start site region 149875
Gm9410 17 91106046 to 91107296 1250 + pseudogene predicted gene 9410
Gm27475 17 91106210 to 91106270 60 + miRNA gene predicted gene, 27475
Gm9411 17 91125116 to 91126194 1078 + pseudogene predicted gene 9411
Gm6741 17 91236811 to 91237557 746 + pseudogene predicted gene 6741
Gm49988 17 91347068 to 91347572 504 - pseudogene predicted gene, 49988
Gm49989 17 91536275 to 91536590 315 - pseudogene predicted gene, 49989
Gm49990 17 91548119 to 91548511 392 + pseudogene predicted gene, 49990
Gm15404 17 91557127 to 91591927 34800 + lincRNA gene predicted gene 15404
Gm49991 17 91566104 to 91628471 62367 + lincRNA gene predicted gene, 49991
D17Mit154 17 91585552 to 91585674 122 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 154
Gm15403 17 91667079 to 91668305 1226 + pseudogene predicted gene 15403
Gm49992 17 91781285 to 91782437 1152 - pseudogene predicted gene, 49992
Gm49993 17 91782635 to 91783133 498 - pseudogene predicted gene, 49993
Gm24244 17 91812491 to 91812620 129 - snoRNA gene predicted gene, 24244
Gm41654 17 91848260 to 91862069 13809 - lncRNA gene predicted gene, 41654
Gm44345 17 91862602 to 91862736 134 + miRNA gene predicted gene, 44345
Gm49994 17 92181065 to 92181398 333 + pseudogene predicted gene, 49994
Gm19145 17 92185388 to 92185957 569 - pseudogene predicted gene, 19145
Tssr146258 17 92309215 to 92309231 16 + TSS region transcription start site region 146258
Gm6751 17 92372015 to 92373116 1101 - pseudogene predicted gene 6751
Tssr146259 17 92409812 to 92409818 6 + TSS region transcription start site region 146259
Gm27039 17 92527273 to 92528510 1237 - pseudogene predicted gene, 27039
Gm49995 17 92600222 to 92600526 304 - pseudogene predicted gene, 49995
Gm21018 17 92717885 to 92719072 1187 - pseudogene predicted gene, 21018
Tssr149876 17 92949396 to 92949397 1 - TSS region transcription start site region 149876
Gm49996 17 92976521 to 92976797 276 + pseudogene predicted gene, 49996
Gm49997 17 93168512 to 93168839 327 + pseudogene predicted gene, 49997
Gm49998 17 93192398 to 93192623 225 - pseudogene predicted gene, 49998
Gm32465 17 93194341 to 93202223 7882 - lncRNA gene predicted gene, 32465
Tssr146260 17 93199008 to 93199033 25 + TSS region transcription start site region 146260
Adcyap1 17 93199017 to 93206537 7520 + protein coding gene adenylate cyclase activating polypeptide 1
Tssr146261 17 93199117 to 93199146 29 + TSS region transcription start site region 146261
Tssr146262 17 93199162 to 93199173 11 + TSS region transcription start site region 146262
Tssr146263 17 93199348 to 93199408 60 + TSS region transcription start site region 146263
Tssr146264 17 93199507 to 93199518 11 + TSS region transcription start site region 146264
D17Mit123.2 17 93199526 to 93199644 118 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 123.2
D17Mit123 17 93199619 to 93199751 132 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 123
Cpgi9654 17 93200808 to 93201078 270 CpG island CpG island 9654