Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:88243464-88533471

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm31615 17 88253483 to 88388699 135216 - lncRNA gene predicted gene, 31615
Cpgi9638 17 88255812 to 88256417 605 CpG island CpG island 9638
Gm41651 17 88273534 to 88354434 80900 + lncRNA gene predicted gene, 41651
1700116H05Rik 17 88296068 to 88307574 11506 - lncRNA gene RIKEN cDNA 1700116H05 gene
Tssr149801 17 88305332 to 88305353 21 - TSS region transcription start site region 149801
Tssr149802 17 88305385 to 88305398 13 - TSS region transcription start site region 149802
Gm22542 17 88342388 to 88342482 94 - snRNA gene predicted gene, 22542
Tssr149803 17 88388464 to 88388471 7 - TSS region transcription start site region 149803
Tssr149804 17 88388555 to 88388574 19 - TSS region transcription start site region 149804
Gm23947 17 88392826 to 88392932 106 - snRNA gene predicted gene, 23947
Tssr149805 17 88403475 to 88403489 14 - TSS region transcription start site region 149805
Cpgi9639 17 88405286 to 88405477 191 CpG island CpG island 9639
Cpgi9640 17 88440192 to 88441966 1774 CpG island CpG island 9640
Foxn2 17 88440712 to 88490533 49821 + protein coding gene forkhead box N2
Tssr146228 17 88440714 to 88440741 27 + TSS region transcription start site region 146228
Tssr146229 17 88440742 to 88440787 45 + TSS region transcription start site region 146229
Tssr146230 17 88441071 to 88441091 20 + TSS region transcription start site region 146230
Tssr146231 17 88441524 to 88441558 34 + TSS region transcription start site region 146231
Tssr149806 17 88441820 to 88441850 30 - TSS region transcription start site region 149806
Tssr146232 17 88479268 to 88479281 13 + TSS region transcription start site region 146232
Cpgi9641 17 88486451 to 88486848 397 CpG island CpG island 9641
Cpgi9642 17 88529663 to 88530636 973 CpG island CpG island 9642
Tssr146233 17 88530113 to 88530142 29 + TSS region transcription start site region 146233
Ppp1r21 17 88530124 to 88588367 58243 + protein coding gene protein phosphatase 1, regulatory subunit 21
Tssr146234 17 88530149 to 88530161 12 + TSS region transcription start site region 146234
Tssr146235 17 88530211 to 88530234 23 + TSS region transcription start site region 146235
Tssr146236 17 88530252 to 88530273 21 + TSS region transcription start site region 146236
Tssr146237 17 88530288 to 88530297 9 + TSS region transcription start site region 146237
Gm38109 17 88533027 to 88533207 180 + unclassified gene predicted gene, 38109