Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:88044883-89465427

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fbxo11 17 87990859 to 88065291 74432 - protein coding gene F-box protein 11
Tssr149792 17 88051737 to 88051741 4 - TSS region transcription start site region 149792
Tssr149793 17 88053667 to 88053688 21 - TSS region transcription start site region 149793
5930436O19Rik 17 88057629 to 88058998 1369 unclassified gene RIKEN cDNA 5930436O19 gene
Tssr149794 17 88058211 to 88058214 3 - TSS region transcription start site region 149794
Cpgi9636 17 88063988 to 88066645 2657 CpG island CpG island 9636
Tssr146222 17 88064780 to 88064801 21 + TSS region transcription start site region 146222
Tssr146223 17 88064818 to 88064829 11 + TSS region transcription start site region 146223
Tssr149795 17 88065638 to 88065729 91 - TSS region transcription start site region 149795
Tssr149796 17 88065771 to 88065831 60 - TSS region transcription start site region 149796
Tssr149797 17 88065852 to 88065873 21 - TSS region transcription start site region 149797
Tssr149798 17 88065982 to 88065993 11 - TSS region transcription start site region 149798
Tssr149799 17 88066004 to 88066087 83 - TSS region transcription start site region 149799
Gm45950 17 88066125 to 88090544 24419 + lncRNA gene predicted gene, 45950
Tssr146224 17 88112091 to 88112113 22 + TSS region transcription start site region 146224
Tssr146225 17 88112609 to 88112648 39 + TSS region transcription start site region 146225
Tssr5229 17 88113361 to 88113376 15 - TSS region transcription start site region 5229
Tssr149800 17 88113389 to 88113399 10 - TSS region transcription start site region 149800
Gm4832 17 88125512 to 88131113 5601 + pseudogene predicted gene 4832
Tssr146226 17 88130676 to 88130679 3 + TSS region transcription start site region 146226
Cpgi9637 17 88132979 to 88133281 302 CpG island CpG island 9637
Gm26612 17 88146084 to 88159761 13677 - lincRNA gene predicted gene, 26612
Gm31499 17 88168487 to 88170604 2117 + lncRNA gene predicted gene, 31499
Tssr146227 17 88191009 to 88191020 11 + TSS region transcription start site region 146227
Gm31615 17 88253483 to 88388699 135216 - lncRNA gene predicted gene, 31615
Cpgi9638 17 88255812 to 88256417 605 CpG island CpG island 9638
Gm41651 17 88273534 to 88354434 80900 + lncRNA gene predicted gene, 41651
1700116H05Rik 17 88296068 to 88307574 11506 - lncRNA gene RIKEN cDNA 1700116H05 gene
Tssr149801 17 88305332 to 88305353 21 - TSS region transcription start site region 149801
Tssr149802 17 88305385 to 88305398 13 - TSS region transcription start site region 149802
Gm22542 17 88342388 to 88342482 94 - snRNA gene predicted gene, 22542
Tssr149803 17 88388464 to 88388471 7 - TSS region transcription start site region 149803
Tssr149804 17 88388555 to 88388574 19 - TSS region transcription start site region 149804
Gm23947 17 88392826 to 88392932 106 - snRNA gene predicted gene, 23947
Tssr149805 17 88403475 to 88403489 14 - TSS region transcription start site region 149805
Cpgi9639 17 88405286 to 88405477 191 CpG island CpG island 9639
Cpgi9640 17 88440192 to 88441966 1774 CpG island CpG island 9640
Foxn2 17 88440712 to 88490533 49821 + protein coding gene forkhead box N2
Tssr146228 17 88440714 to 88440741 27 + TSS region transcription start site region 146228
Tssr146229 17 88440742 to 88440787 45 + TSS region transcription start site region 146229
Tssr146230 17 88441071 to 88441091 20 + TSS region transcription start site region 146230
Tssr146231 17 88441524 to 88441558 34 + TSS region transcription start site region 146231
Tssr149806 17 88441820 to 88441850 30 - TSS region transcription start site region 149806
Tssr146232 17 88479268 to 88479281 13 + TSS region transcription start site region 146232
Cpgi9641 17 88486451 to 88486848 397 CpG island CpG island 9641
Cpgi9642 17 88529663 to 88530636 973 CpG island CpG island 9642
Tssr146233 17 88530113 to 88530142 29 + TSS region transcription start site region 146233
Ppp1r21 17 88530124 to 88588367 58243 + protein coding gene protein phosphatase 1, regulatory subunit 21
Tssr146234 17 88530149 to 88530161 12 + TSS region transcription start site region 146234
Tssr146235 17 88530211 to 88530234 23 + TSS region transcription start site region 146235
Tssr146236 17 88530252 to 88530273 21 + TSS region transcription start site region 146236
Tssr146237 17 88530288 to 88530297 9 + TSS region transcription start site region 146237
Gm38109 17 88533027 to 88533207 180 + unclassified gene predicted gene, 38109
Tssr146238 17 88580373 to 88580389 16 + TSS region transcription start site region 146238
Tssr146239 17 88580395 to 88580407 12 + TSS region transcription start site region 146239
Tssr146240 17 88581959 to 88581974 15 + TSS region transcription start site region 146240
Tssr5230 17 88583682 to 88583725 43 + TSS region transcription start site region 5230
Cpgi9643 17 88596994 to 88597383 389 CpG island CpG island 9643
Tssr146241 17 88597619 to 88597628 9 + TSS region transcription start site region 146241
Ston1 17 88597635 to 88645724 48089 + protein coding gene stonin 1
Tssr146242 17 88597663 to 88597704 41 + TSS region transcription start site region 146242
Cpgi9644 17 88597726 to 88598093 367 CpG island CpG island 9644
Tssr149807 17 88599012 to 88599057 45 - TSS region transcription start site region 149807
Gm9406 17 88607870 to 88608544 674 - pseudogene predicted gene 9406
Gm31704 17 88616493 to 88626394 9901 - lncRNA gene predicted gene, 31704
Tssr149808 17 88625492 to 88625521 29 - TSS region transcription start site region 149808
Tssr146243 17 88626530 to 88626548 18 + TSS region transcription start site region 146243
Tssr146244 17 88626549 to 88626566 17 + TSS region transcription start site region 146244
Tssr146245 17 88626569 to 88626604 35 + TSS region transcription start site region 146245
Tssr146246 17 88626747 to 88626775 28 + TSS region transcription start site region 146246
Tssr146247 17 88627359 to 88627434 75 + TSS region transcription start site region 146247
Tssr146248 17 88627438 to 88627484 46 + TSS region transcription start site region 146248
Gm31903 17 88653029 to 88654062 1033 - lncRNA gene predicted gene, 31903
Gm38460 17 88653861 to 88662686 8825 + lncRNA gene predicted gene, 38460
Gm50056 17 88662406 to 88664765 2359 - lincRNA gene predicted gene, 50056
Cpgi9645 17 88668493 to 88668775 282 CpG island CpG island 9645
Tssr146249 17 88668643 to 88668654 11 + TSS region transcription start site region 146249
Gtf2a1l 17 88668660 to 88715152 46492 + protein coding gene general transcription factor IIA, 1-like
Tssr146250 17 88668662 to 88668701 39 + TSS region transcription start site region 146250
Lhcgr 17 88716861 to 88792059 75198 - protein coding gene luteinizing hormone/choriogonadotropin receptor
Cpgi9646 17 88753382 to 88753962 580 CpG island CpG island 9646
Cpgi9647 17 88754883 to 88755427 544 CpG island CpG island 9647
Cpgi9648 17 88791720 to 88792043 323 CpG island CpG island 9648
Tssr149809 17 88791978 to 88791996 18 - TSS region transcription start site region 149809
Tssr149810 17 88791999 to 88792000 1 - TSS region transcription start site region 149810
Tssr149811 17 88792007 to 88792022 15 - TSS region transcription start site region 149811
Gm9407 17 88856233 to 88856622 389 - pseudogene predicted gene 9407
Marcksl1-ps2 17 88982497 to 88983100 603 - pseudogene MARCKS-like 1, pseudogene 2
Fshr 17 88984952 to 89200675 215723 - protein coding gene follicle stimulating hormone receptor
Tssr5231 17 89099962 to 89099974 12 + TSS region transcription start site region 5231
Tssr149812 17 89200684 to 89200697 13 - TSS region transcription start site region 149812
Tssr149813 17 89200703 to 89200719 16 - TSS region transcription start site region 149813
4933400B14Rik 17 89320227 to 89327333 7106 + lncRNA gene RIKEN cDNA 4933400B14 gene
Gm4719 17 89379241 to 89384993 5752 + lncRNA gene predicted gene 4719