Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:87827609-88397648

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm50039 17 87825073 to 87838997 13924 + lincRNA gene predicted gene, 50039
Tssr146215 17 87863419 to 87863424 5 + TSS region transcription start site region 146215
Rpl36-ps4 17 87921060 to 87921425 365 + pseudogene ribosomal protein L36, pseudogene 4
Gm50040 17 87949927 to 87950385 458 + pseudogene predicted gene, 50040
Gm50041 17 87969004 to 87969220 216 - pseudogene predicted gene, 50041
Cpgi9635 17 87974429 to 87975864 1435 CpG island CpG island 9635
Tssr149788 17 87974873 to 87974911 38 - TSS region transcription start site region 149788
Tssr146216 17 87975044 to 87975085 41 + TSS region transcription start site region 146216
Msh6 17 87975062 to 87990892 15830 + protein coding gene mutS homolog 6
Tssr146217 17 87975086 to 87975107 21 + TSS region transcription start site region 146217
Tssr146218 17 87984528 to 87984535 7 + TSS region transcription start site region 146218
Tssr146219 17 87986505 to 87986516 11 + TSS region transcription start site region 146219
Fbxo11 17 87990859 to 88065291 74432 - protein coding gene F-box protein 11
Tssr146220 17 88000789 to 88000790 1 + TSS region transcription start site region 146220
Tssr149789 17 88002526 to 88002539 13 - TSS region transcription start site region 149789
Tssr149790 17 88008885 to 88008891 6 - TSS region transcription start site region 149790
Tssr149791 17 88029487 to 88029491 4 - TSS region transcription start site region 149791
Tssr146221 17 88042696 to 88042741 45 + TSS region transcription start site region 146221
Tssr149792 17 88051737 to 88051741 4 - TSS region transcription start site region 149792
Tssr149793 17 88053667 to 88053688 21 - TSS region transcription start site region 149793
5930436O19Rik 17 88057629 to 88058998 1369 unclassified gene RIKEN cDNA 5930436O19 gene
Tssr149794 17 88058211 to 88058214 3 - TSS region transcription start site region 149794
Cpgi9636 17 88063988 to 88066645 2657 CpG island CpG island 9636
Tssr146222 17 88064780 to 88064801 21 + TSS region transcription start site region 146222
Tssr146223 17 88064818 to 88064829 11 + TSS region transcription start site region 146223
Tssr149795 17 88065638 to 88065729 91 - TSS region transcription start site region 149795
Tssr149796 17 88065771 to 88065831 60 - TSS region transcription start site region 149796
Tssr149797 17 88065852 to 88065873 21 - TSS region transcription start site region 149797
Tssr149798 17 88065982 to 88065993 11 - TSS region transcription start site region 149798
Tssr149799 17 88066004 to 88066087 83 - TSS region transcription start site region 149799
Gm45950 17 88066125 to 88090544 24419 + lncRNA gene predicted gene, 45950
Tssr146224 17 88112091 to 88112113 22 + TSS region transcription start site region 146224
Tssr146225 17 88112609 to 88112648 39 + TSS region transcription start site region 146225
Tssr5229 17 88113361 to 88113376 15 - TSS region transcription start site region 5229
Tssr149800 17 88113389 to 88113399 10 - TSS region transcription start site region 149800
Gm4832 17 88125512 to 88131113 5601 + pseudogene predicted gene 4832
Tssr146226 17 88130676 to 88130679 3 + TSS region transcription start site region 146226
Cpgi9637 17 88132979 to 88133281 302 CpG island CpG island 9637
Gm26612 17 88146084 to 88159761 13677 - lincRNA gene predicted gene, 26612
Gm31499 17 88168487 to 88170604 2117 + lncRNA gene predicted gene, 31499
Tssr146227 17 88191009 to 88191020 11 + TSS region transcription start site region 146227
Gm31615 17 88253483 to 88388699 135216 - lncRNA gene predicted gene, 31615
Cpgi9638 17 88255812 to 88256417 605 CpG island CpG island 9638
Gm41651 17 88273534 to 88354434 80900 + lncRNA gene predicted gene, 41651
1700116H05Rik 17 88296068 to 88307574 11506 - lncRNA gene RIKEN cDNA 1700116H05 gene
Tssr149801 17 88305332 to 88305353 21 - TSS region transcription start site region 149801
Tssr149802 17 88305385 to 88305398 13 - TSS region transcription start site region 149802
Gm22542 17 88342388 to 88342482 94 - snRNA gene predicted gene, 22542
Tssr149803 17 88388464 to 88388471 7 - TSS region transcription start site region 149803
Tssr149804 17 88388555 to 88388574 19 - TSS region transcription start site region 149804
Gm23947 17 88392826 to 88392932 106 - snRNA gene predicted gene, 23947