Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:87651125-88505544

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Epcam 17 87635979 to 87651127 15148 + protein coding gene epithelial cell adhesion molecule
Cpgi9630 17 87672277 to 87673342 1065 CpG island CpG island 9630
Tssr146212 17 87672523 to 87672580 57 + TSS region transcription start site region 146212
Msh2 17 87672557 to 87723713 51156 + protein coding gene mutS homolog 2
Tssr146213 17 87673330 to 87673340 10 + TSS region transcription start site region 146213
Tssr149784 17 87682826 to 87682827 1 - TSS region transcription start site region 149784
Tssr149785 17 87691593 to 87691627 34 - TSS region transcription start site region 149785
Cpgi9631 17 87745476 to 87746974 1498 CpG island CpG island 9631
Kcnk12 17 87745821 to 87797994 52173 - protein coding gene potassium channel, subfamily K, member 12
Cpgi9632 17 87796768 to 87799143 2375 CpG island CpG island 9632
Tssr149786 17 87798029 to 87798049 20 - TSS region transcription start site region 149786
Tssr149787 17 87798055 to 87798090 35 - TSS region transcription start site region 149787
Gm41649 17 87801387 to 87811650 10263 + lncRNA gene predicted gene, 41649
Gm50039 17 87825073 to 87838997 13924 + lincRNA gene predicted gene, 50039
Tssr146214 17 87825917 to 87825925 8 + TSS region transcription start site region 146214
Cpgi9633 17 87826307 to 87826572 265 CpG island CpG island 9633
Cpgi9634 17 87826986 to 87827221 235 CpG island CpG island 9634
Tssr146215 17 87863419 to 87863424 5 + TSS region transcription start site region 146215
Rpl36-ps4 17 87921060 to 87921425 365 + pseudogene ribosomal protein L36, pseudogene 4
Gm50040 17 87949927 to 87950385 458 + pseudogene predicted gene, 50040
Gm50041 17 87969004 to 87969220 216 - pseudogene predicted gene, 50041
Cpgi9635 17 87974429 to 87975864 1435 CpG island CpG island 9635
Tssr149788 17 87974873 to 87974911 38 - TSS region transcription start site region 149788
Tssr146216 17 87975044 to 87975085 41 + TSS region transcription start site region 146216
Msh6 17 87975062 to 87990892 15830 + protein coding gene mutS homolog 6
Tssr146217 17 87975086 to 87975107 21 + TSS region transcription start site region 146217
Tssr146218 17 87984528 to 87984535 7 + TSS region transcription start site region 146218
Tssr146219 17 87986505 to 87986516 11 + TSS region transcription start site region 146219
Fbxo11 17 87990859 to 88065291 74432 - protein coding gene F-box protein 11
Tssr146220 17 88000789 to 88000790 1 + TSS region transcription start site region 146220
Tssr149789 17 88002526 to 88002539 13 - TSS region transcription start site region 149789
Tssr149790 17 88008885 to 88008891 6 - TSS region transcription start site region 149790
Tssr149791 17 88029487 to 88029491 4 - TSS region transcription start site region 149791
Tssr146221 17 88042696 to 88042741 45 + TSS region transcription start site region 146221
Tssr149792 17 88051737 to 88051741 4 - TSS region transcription start site region 149792
Tssr149793 17 88053667 to 88053688 21 - TSS region transcription start site region 149793
5930436O19Rik 17 88057629 to 88058998 1369 unclassified gene RIKEN cDNA 5930436O19 gene
Tssr149794 17 88058211 to 88058214 3 - TSS region transcription start site region 149794
Cpgi9636 17 88063988 to 88066645 2657 CpG island CpG island 9636
Tssr146222 17 88064780 to 88064801 21 + TSS region transcription start site region 146222
Tssr146223 17 88064818 to 88064829 11 + TSS region transcription start site region 146223
Tssr149795 17 88065638 to 88065729 91 - TSS region transcription start site region 149795
Tssr149796 17 88065771 to 88065831 60 - TSS region transcription start site region 149796
Tssr149797 17 88065852 to 88065873 21 - TSS region transcription start site region 149797
Tssr149798 17 88065982 to 88065993 11 - TSS region transcription start site region 149798
Tssr149799 17 88066004 to 88066087 83 - TSS region transcription start site region 149799
Gm45950 17 88066125 to 88090544 24419 + lncRNA gene predicted gene, 45950
Tssr146224 17 88112091 to 88112113 22 + TSS region transcription start site region 146224
Tssr146225 17 88112609 to 88112648 39 + TSS region transcription start site region 146225
Tssr5229 17 88113361 to 88113376 15 - TSS region transcription start site region 5229
Tssr149800 17 88113389 to 88113399 10 - TSS region transcription start site region 149800
Gm4832 17 88125512 to 88131113 5601 + pseudogene predicted gene 4832
Tssr146226 17 88130676 to 88130679 3 + TSS region transcription start site region 146226
Cpgi9637 17 88132979 to 88133281 302 CpG island CpG island 9637
Gm26612 17 88146084 to 88159761 13677 - lincRNA gene predicted gene, 26612
Gm31499 17 88168487 to 88170604 2117 + lncRNA gene predicted gene, 31499
Tssr146227 17 88191009 to 88191020 11 + TSS region transcription start site region 146227
Gm31615 17 88253483 to 88388699 135216 - lncRNA gene predicted gene, 31615
Cpgi9638 17 88255812 to 88256417 605 CpG island CpG island 9638
Gm41651 17 88273534 to 88354434 80900 + lncRNA gene predicted gene, 41651
1700116H05Rik 17 88296068 to 88307574 11506 - lncRNA gene RIKEN cDNA 1700116H05 gene
Tssr149801 17 88305332 to 88305353 21 - TSS region transcription start site region 149801
Tssr149802 17 88305385 to 88305398 13 - TSS region transcription start site region 149802
Gm22542 17 88342388 to 88342482 94 - snRNA gene predicted gene, 22542
Tssr149803 17 88388464 to 88388471 7 - TSS region transcription start site region 149803
Tssr149804 17 88388555 to 88388574 19 - TSS region transcription start site region 149804
Gm23947 17 88392826 to 88392932 106 - snRNA gene predicted gene, 23947
Tssr149805 17 88403475 to 88403489 14 - TSS region transcription start site region 149805
Cpgi9639 17 88405286 to 88405477 191 CpG island CpG island 9639
Cpgi9640 17 88440192 to 88441966 1774 CpG island CpG island 9640
Foxn2 17 88440712 to 88490533 49821 + protein coding gene forkhead box N2
Tssr146228 17 88440714 to 88440741 27 + TSS region transcription start site region 146228
Tssr146229 17 88440742 to 88440787 45 + TSS region transcription start site region 146229
Tssr146230 17 88441071 to 88441091 20 + TSS region transcription start site region 146230
Tssr146231 17 88441524 to 88441558 34 + TSS region transcription start site region 146231
Tssr149806 17 88441820 to 88441850 30 - TSS region transcription start site region 149806
Tssr146232 17 88479268 to 88479281 13 + TSS region transcription start site region 146232
Cpgi9641 17 88486451 to 88486848 397 CpG island CpG island 9641