Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:87645073-88018997

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Epcam 17 87635979 to 87651127 15148 + protein coding gene epithelial cell adhesion molecule
Tssr146201 17 87646139 to 87646152 13 + TSS region transcription start site region 146201
Tssr146202 17 87646249 to 87646260 11 + TSS region transcription start site region 146202
Tssr146203 17 87646270 to 87646292 22 + TSS region transcription start site region 146203
Tssr146204 17 87646301 to 87646313 12 + TSS region transcription start site region 146204
Tssr146205 17 87647512 to 87647516 4 + TSS region transcription start site region 146205
Tssr146206 17 87648342 to 87648345 3 + TSS region transcription start site region 146206
Tssr146207 17 87650432 to 87650448 16 + TSS region transcription start site region 146207
Tssr146208 17 87650452 to 87650466 14 + TSS region transcription start site region 146208
Tssr146209 17 87650491 to 87650530 39 + TSS region transcription start site region 146209
Tssr146210 17 87650565 to 87650580 15 + TSS region transcription start site region 146210
Tssr146211 17 87650822 to 87650827 5 + TSS region transcription start site region 146211
Cpgi9630 17 87672277 to 87673342 1065 CpG island CpG island 9630
Tssr146212 17 87672523 to 87672580 57 + TSS region transcription start site region 146212
Msh2 17 87672557 to 87723713 51156 + protein coding gene mutS homolog 2
Tssr146213 17 87673330 to 87673340 10 + TSS region transcription start site region 146213
Tssr149784 17 87682826 to 87682827 1 - TSS region transcription start site region 149784
Tssr149785 17 87691593 to 87691627 34 - TSS region transcription start site region 149785
Cpgi9631 17 87745476 to 87746974 1498 CpG island CpG island 9631
Kcnk12 17 87745821 to 87797994 52173 - protein coding gene potassium channel, subfamily K, member 12
Cpgi9632 17 87796768 to 87799143 2375 CpG island CpG island 9632
Tssr149786 17 87798029 to 87798049 20 - TSS region transcription start site region 149786
Tssr149787 17 87798055 to 87798090 35 - TSS region transcription start site region 149787
Gm41649 17 87801387 to 87811650 10263 + lncRNA gene predicted gene, 41649
Gm50039 17 87825073 to 87838997 13924 + lincRNA gene predicted gene, 50039
Tssr146214 17 87825917 to 87825925 8 + TSS region transcription start site region 146214
Cpgi9633 17 87826307 to 87826572 265 CpG island CpG island 9633
Cpgi9634 17 87826986 to 87827221 235 CpG island CpG island 9634
Tssr146215 17 87863419 to 87863424 5 + TSS region transcription start site region 146215
Rpl36-ps4 17 87921060 to 87921425 365 + pseudogene ribosomal protein L36, pseudogene 4
Gm50040 17 87949927 to 87950385 458 + pseudogene predicted gene, 50040
Gm50041 17 87969004 to 87969220 216 - pseudogene predicted gene, 50041
Cpgi9635 17 87974429 to 87975864 1435 CpG island CpG island 9635
Tssr149788 17 87974873 to 87974911 38 - TSS region transcription start site region 149788
Tssr146216 17 87975044 to 87975085 41 + TSS region transcription start site region 146216
Msh6 17 87975062 to 87990892 15830 + protein coding gene mutS homolog 6
Tssr146217 17 87975086 to 87975107 21 + TSS region transcription start site region 146217
Tssr146218 17 87984528 to 87984535 7 + TSS region transcription start site region 146218
Tssr146219 17 87986505 to 87986516 11 + TSS region transcription start site region 146219
Fbxo11 17 87990859 to 88065291 74432 - protein coding gene F-box protein 11
Tssr146220 17 88000789 to 88000790 1 + TSS region transcription start site region 146220
Tssr149789 17 88002526 to 88002539 13 - TSS region transcription start site region 149789
Tssr149790 17 88008885 to 88008891 6 - TSS region transcription start site region 149790