Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:87436196-87837309

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Calm2 17 87433412 to 87446935 13523 - protein coding gene calmodulin 2
Tssr149770 17 87438519 to 87438536 17 - TSS region transcription start site region 149770
Tssr149771 17 87438673 to 87438690 17 - TSS region transcription start site region 149771
Tssr149772 17 87440915 to 87440920 5 - TSS region transcription start site region 149772
Cpgi9626 17 87445751 to 87447521 1770 CpG island CpG island 9626
Tssr146185 17 87446145 to 87446150 5 + TSS region transcription start site region 146185
Tssr146186 17 87446677 to 87446680 3 + TSS region transcription start site region 146186
Tssr149773 17 87446854 to 87446869 15 - TSS region transcription start site region 149773
Tssr146187 17 87447225 to 87447238 13 + TSS region transcription start site region 146187
Gm26005 17 87453223 to 87453356 133 - snoRNA gene predicted gene, 26005
Gm30794 17 87455103 to 87459462 4359 - lncRNA gene predicted gene, 30794
Tssr149774 17 87459453 to 87459483 30 - TSS region transcription start site region 149774
Gm30938 17 87464640 to 87473742 9102 - lncRNA gene predicted gene, 30938
Tssr149775 17 87473762 to 87473794 32 - TSS region transcription start site region 149775
Tssr149776 17 87473795 to 87473808 13 - TSS region transcription start site region 149776
Cpgi9627 17 87474016 to 87474634 618 CpG island CpG island 9627
Gm28676 17 87490748 to 87502616 11868 + lincRNA gene predicted gene 28676
Gm30984 17 87529503 to 87530744 1241 - lncRNA gene predicted gene, 30984
Tssr146188 17 87530918 to 87530925 7 + TSS region transcription start site region 146188
Gm46587 17 87559097 to 87570757 11660 - lncRNA gene predicted gene, 46587
Gm46609 17 87602393 to 87614830 12437 - lncRNA gene predicted gene, 46609
Tssr146189 17 87603628 to 87603674 46 + TSS region transcription start site region 146189
Cpgi9628 17 87609763 to 87610014 251 CpG island CpG island 9628
Tssr149777 17 87611631 to 87611635 4 - TSS region transcription start site region 149777
Tssr149778 17 87613424 to 87613433 9 - TSS region transcription start site region 149778
Tssr149779 17 87613488 to 87613509 21 - TSS region transcription start site region 149779
Tssr149780 17 87628243 to 87628256 13 - TSS region transcription start site region 149780
Tssr146190 17 87635974 to 87635990 16 + TSS region transcription start site region 146190
Epcam 17 87635979 to 87651127 15148 + protein coding gene epithelial cell adhesion molecule
Tssr146191 17 87636103 to 87636107 4 + TSS region transcription start site region 146191
Cpgi9629 17 87636196 to 87637309 1113 CpG island CpG island 9629
Tssr146192 17 87636682 to 87636698 16 + TSS region transcription start site region 146192
Tssr146193 17 87636710 to 87636737 27 + TSS region transcription start site region 146193
Tssr149781 17 87637099 to 87637109 10 - TSS region transcription start site region 149781
Tssr146194 17 87638410 to 87638415 5 + TSS region transcription start site region 146194
Tssr146195 17 87639880 to 87639890 10 + TSS region transcription start site region 146195
Tssr146196 17 87640310 to 87640323 13 + TSS region transcription start site region 146196
Tssr146197 17 87640371 to 87640390 19 + TSS region transcription start site region 146197
Tssr146198 17 87640445 to 87640463 18 + TSS region transcription start site region 146198
Tssr146199 17 87641429 to 87641476 47 + TSS region transcription start site region 146199
Tssr149782 17 87641465 to 87641500 35 - TSS region transcription start site region 149782
Tssr149783 17 87644720 to 87644744 24 - TSS region transcription start site region 149783
Tssr146200 17 87644874 to 87644889 15 + TSS region transcription start site region 146200
Tssr146201 17 87646139 to 87646152 13 + TSS region transcription start site region 146201
Tssr146202 17 87646249 to 87646260 11 + TSS region transcription start site region 146202
Tssr146203 17 87646270 to 87646292 22 + TSS region transcription start site region 146203
Tssr146204 17 87646301 to 87646313 12 + TSS region transcription start site region 146204
Tssr146205 17 87647512 to 87647516 4 + TSS region transcription start site region 146205
Tssr146206 17 87648342 to 87648345 3 + TSS region transcription start site region 146206
Tssr146207 17 87650432 to 87650448 16 + TSS region transcription start site region 146207
Tssr146208 17 87650452 to 87650466 14 + TSS region transcription start site region 146208
Tssr146209 17 87650491 to 87650530 39 + TSS region transcription start site region 146209
Tssr146210 17 87650565 to 87650580 15 + TSS region transcription start site region 146210
Tssr146211 17 87650822 to 87650827 5 + TSS region transcription start site region 146211
Cpgi9630 17 87672277 to 87673342 1065 CpG island CpG island 9630
Tssr146212 17 87672523 to 87672580 57 + TSS region transcription start site region 146212
Msh2 17 87672557 to 87723713 51156 + protein coding gene mutS homolog 2
Tssr146213 17 87673330 to 87673340 10 + TSS region transcription start site region 146213
Tssr149784 17 87682826 to 87682827 1 - TSS region transcription start site region 149784
Tssr149785 17 87691593 to 87691627 34 - TSS region transcription start site region 149785
Cpgi9631 17 87745476 to 87746974 1498 CpG island CpG island 9631
Kcnk12 17 87745821 to 87797994 52173 - protein coding gene potassium channel, subfamily K, member 12
Cpgi9632 17 87796768 to 87799143 2375 CpG island CpG island 9632
Tssr149786 17 87798029 to 87798049 20 - TSS region transcription start site region 149786
Tssr149787 17 87798055 to 87798090 35 - TSS region transcription start site region 149787
Gm41649 17 87801387 to 87811650 10263 + lncRNA gene predicted gene, 41649
Gm50039 17 87825073 to 87838997 13924 + lincRNA gene predicted gene, 50039
Tssr146214 17 87825917 to 87825925 8 + TSS region transcription start site region 146214
Cpgi9633 17 87826307 to 87826572 265 CpG island CpG island 9633
Cpgi9634 17 87826986 to 87827221 235 CpG island CpG island 9634