Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:87162239-87564462

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr146179 17 87174987 to 87174992 5 + TSS region transcription start site region 146179
Gm22346 17 87184105 to 87184225 120 - miRNA gene predicted gene, 22346
C330024C12Rik 17 87192216 to 87194942 2726 - lncRNA gene RIKEN cDNA C330024C12 gene
Tssr149758 17 87203366 to 87203368 2 - TSS region transcription start site region 149758
Gm41647 17 87206021 to 87206977 956 - lncRNA gene predicted gene, 41647
Tssr146180 17 87240944 to 87240947 3 + TSS region transcription start site region 146180
Mcfd2 17 87254443 to 87265935 11492 - protein coding gene multiple coagulation factor deficiency 2
Tssr149759 17 87264227 to 87264238 11 - TSS region transcription start site region 149759
Tssr149760 17 87264239 to 87264265 26 - TSS region transcription start site region 149760
Cpgi9620 17 87265336 to 87266318 982 CpG island CpG island 9620
Tssr149761 17 87265866 to 87265921 55 - TSS region transcription start site region 149761
Gm46586 17 87267539 to 87275371 7832 + lncRNA gene predicted gene, 46586
4833418N02Rik 17 87274886 to 87282814 7928 - lincRNA gene RIKEN cDNA 4833418N02 gene
Cpgi9621 17 87282108 to 87283957 1849 CpG island CpG island 9621
Tssr146181 17 87282624 to 87282640 16 + TSS region transcription start site region 146181
Tssr149762 17 87282771 to 87282786 15 - TSS region transcription start site region 149762
Tssr149763 17 87282793 to 87282821 28 - TSS region transcription start site region 149763
Tssr146182 17 87282880 to 87282950 70 + TSS region transcription start site region 146182
Ttc7 17 87282886 to 87381769 98883 + protein coding gene tetratricopeptide repeat domain 7
Tssr146183 17 87282998 to 87283012 14 + TSS region transcription start site region 146183
Tssr146184 17 87283202 to 87283220 18 + TSS region transcription start site region 146184
Tssr149764 17 87306914 to 87306954 40 - TSS region transcription start site region 149764
Cpgi9622 17 87325676 to 87325904 228 CpG island CpG island 9622
Gm15978 17 87329764 to 87332052 2288 - antisense lncRNA gene predicted gene 15978
Cpgi9623 17 87330134 to 87330529 395 CpG island CpG island 9623
Tssr149765 17 87332023 to 87332041 18 - TSS region transcription start site region 149765
Cpgi9624 17 87351659 to 87351887 228 CpG island CpG island 9624
0610012D04Rik 17 87362239 to 87364462 2223 - antisense lncRNA gene RIKEN cDNA 0610012D04 gene
Stpg4 17 87389571 to 87427741 38170 - protein coding gene sperm tail PG rich repeat containing 4
Ltpr7 17 87393770 to 87393999 229 QTL Leishmania tropica response 7
Ltpr7a 17 87393770 to 87393999 229 QTL Leishmania tropica response 7a
Ltpr7b 17 87393770 to 87393999 229 QTL Leishmania tropica response 7b
Ltpr7c 17 87393770 to 87393999 229 QTL Leishmania tropica response 7c
D17Mit130 17 87393770 to 87393999 229 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 130
Cpgi9625 17 87427489 to 87427911 422 CpG island CpG island 9625
Tssr149766 17 87427690 to 87427707 17 - TSS region transcription start site region 149766
Tssr149767 17 87427732 to 87427741 9 - TSS region transcription start site region 149767
Tssr149768 17 87427773 to 87427778 5 - TSS region transcription start site region 149768
Calm2 17 87433412 to 87446935 13523 - protein coding gene calmodulin 2
Tssr149769 17 87433939 to 87433950 11 - TSS region transcription start site region 149769
Tssr149770 17 87438519 to 87438536 17 - TSS region transcription start site region 149770
Tssr149771 17 87438673 to 87438690 17 - TSS region transcription start site region 149771
Tssr149772 17 87440915 to 87440920 5 - TSS region transcription start site region 149772
Cpgi9626 17 87445751 to 87447521 1770 CpG island CpG island 9626
Tssr146185 17 87446145 to 87446150 5 + TSS region transcription start site region 146185
Tssr146186 17 87446677 to 87446680 3 + TSS region transcription start site region 146186
Tssr149773 17 87446854 to 87446869 15 - TSS region transcription start site region 149773
Tssr146187 17 87447225 to 87447238 13 + TSS region transcription start site region 146187
Gm26005 17 87453223 to 87453356 133 - snoRNA gene predicted gene, 26005
Gm30794 17 87455103 to 87459462 4359 - lncRNA gene predicted gene, 30794
Tssr149774 17 87459453 to 87459483 30 - TSS region transcription start site region 149774
Gm30938 17 87464640 to 87473742 9102 - lncRNA gene predicted gene, 30938
Tssr149775 17 87473762 to 87473794 32 - TSS region transcription start site region 149775
Tssr149776 17 87473795 to 87473808 13 - TSS region transcription start site region 149776
Cpgi9627 17 87474016 to 87474634 618 CpG island CpG island 9627
Gm28676 17 87490748 to 87502616 11868 + lincRNA gene predicted gene 28676
Gm30984 17 87529503 to 87530744 1241 - lncRNA gene predicted gene, 30984
Tssr146188 17 87530918 to 87530925 7 + TSS region transcription start site region 146188
Gm46587 17 87559097 to 87570757 11660 - lncRNA gene predicted gene, 46587