Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:87135336-87396318

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Socs5 17 87107679 to 87137839 30160 + protein coding gene suppressor of cytokine signaling 5
Tssr146178 17 87145619 to 87145622 3 + TSS region transcription start site region 146178
Tssr146179 17 87174987 to 87174992 5 + TSS region transcription start site region 146179
Gm22346 17 87184105 to 87184225 120 - miRNA gene predicted gene, 22346
C330024C12Rik 17 87192216 to 87194942 2726 - lncRNA gene RIKEN cDNA C330024C12 gene
Tssr149758 17 87203366 to 87203368 2 - TSS region transcription start site region 149758
Gm41647 17 87206021 to 87206977 956 - lncRNA gene predicted gene, 41647
Tssr146180 17 87240944 to 87240947 3 + TSS region transcription start site region 146180
Mcfd2 17 87254443 to 87265935 11492 - protein coding gene multiple coagulation factor deficiency 2
Tssr149759 17 87264227 to 87264238 11 - TSS region transcription start site region 149759
Tssr149760 17 87264239 to 87264265 26 - TSS region transcription start site region 149760
Cpgi9620 17 87265336 to 87266318 982 CpG island CpG island 9620
Tssr149761 17 87265866 to 87265921 55 - TSS region transcription start site region 149761
Gm46586 17 87267539 to 87275371 7832 + lncRNA gene predicted gene, 46586
4833418N02Rik 17 87274886 to 87282814 7928 - lincRNA gene RIKEN cDNA 4833418N02 gene
Cpgi9621 17 87282108 to 87283957 1849 CpG island CpG island 9621
Tssr146181 17 87282624 to 87282640 16 + TSS region transcription start site region 146181
Tssr149762 17 87282771 to 87282786 15 - TSS region transcription start site region 149762
Tssr149763 17 87282793 to 87282821 28 - TSS region transcription start site region 149763
Tssr146182 17 87282880 to 87282950 70 + TSS region transcription start site region 146182
Ttc7 17 87282886 to 87381769 98883 + protein coding gene tetratricopeptide repeat domain 7
Tssr146183 17 87282998 to 87283012 14 + TSS region transcription start site region 146183
Tssr146184 17 87283202 to 87283220 18 + TSS region transcription start site region 146184
Tssr149764 17 87306914 to 87306954 40 - TSS region transcription start site region 149764
Cpgi9622 17 87325676 to 87325904 228 CpG island CpG island 9622
Gm15978 17 87329764 to 87332052 2288 - antisense lncRNA gene predicted gene 15978
Cpgi9623 17 87330134 to 87330529 395 CpG island CpG island 9623
Tssr149765 17 87332023 to 87332041 18 - TSS region transcription start site region 149765
Cpgi9624 17 87351659 to 87351887 228 CpG island CpG island 9624
0610012D04Rik 17 87362239 to 87364462 2223 - antisense lncRNA gene RIKEN cDNA 0610012D04 gene
Stpg4 17 87389571 to 87427741 38170 - protein coding gene sperm tail PG rich repeat containing 4
Ltpr7 17 87393770 to 87393999 229 QTL Leishmania tropica response 7
Ltpr7a 17 87393770 to 87393999 229 QTL Leishmania tropica response 7a
Ltpr7c 17 87393770 to 87393999 229 QTL Leishmania tropica response 7c
Ltpr7b 17 87393770 to 87393999 229 QTL Leishmania tropica response 7b
D17Mit130 17 87393770 to 87393999 229 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 130