Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:87024580-87245154

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pigf 17 86997256 to 87025406 28150 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class F
Cpgi9612 17 87024646 to 87025962 1316 CpG island CpG island 9612
Tssr149754 17 87025353 to 87025403 50 - TSS region transcription start site region 149754
Tssr149755 17 87025539 to 87025548 9 - TSS region transcription start site region 149755
Tssr146172 17 87025556 to 87025635 79 + TSS region transcription start site region 146172
Cript 17 87025561 to 87035808 10247 + protein coding gene cysteine-rich PDZ-binding protein
Gm30421 17 87039808 to 87050887 11079 - lncRNA gene predicted gene, 30421
Cpgi9613 17 87041736 to 87041987 251 CpG island CpG island 9613
Cpgi9614 17 87044497 to 87044681 184 CpG island CpG island 9614
Tssr149756 17 87050648 to 87050675 27 - TSS region transcription start site region 149756
Gm24648 17 87053694 to 87053825 131 - snoRNA gene predicted gene, 24648
Tssr146173 17 87078255 to 87078267 12 + TSS region transcription start site region 146173
Gm5499 17 87078271 to 87079155 884 + pseudogene predicted pseudogene 5499
Cpgi9615 17 87091492 to 87091782 290 CpG island CpG island 9615
Gm30510 17 87091755 to 87107347 15592 - lncRNA gene predicted gene, 30510
Tssr149757 17 87101055 to 87101059 4 - TSS region transcription start site region 149757
Cpgi9616 17 87106734 to 87108370 1636 CpG island CpG island 9616
Tssr5228 17 87107287 to 87107322 35 + TSS region transcription start site region 5228
Tssr146174 17 87107621 to 87107684 63 + TSS region transcription start site region 146174
Socs5 17 87107679 to 87137839 30160 + protein coding gene suppressor of cytokine signaling 5
Tssr146175 17 87107685 to 87107702 17 + TSS region transcription start site region 146175
Tssr146176 17 87116930 to 87116933 3 + TSS region transcription start site region 146176
Tssr146177 17 87119252 to 87119263 11 + TSS region transcription start site region 146177
Cpgi9617 17 87125335 to 87125698 363 CpG island CpG island 9617
Cpgi9618 17 87133951 to 87134127 176 CpG island CpG island 9618
Cpgi9619 17 87134580 to 87135154 574 CpG island CpG island 9619
Tssr146178 17 87145619 to 87145622 3 + TSS region transcription start site region 146178
Tssr146179 17 87174987 to 87174992 5 + TSS region transcription start site region 146179
Gm22346 17 87184105 to 87184225 120 - miRNA gene predicted gene, 22346
C330024C12Rik 17 87192216 to 87194942 2726 - lncRNA gene RIKEN cDNA C330024C12 gene
Tssr149758 17 87203366 to 87203368 2 - TSS region transcription start site region 149758
Gm41647 17 87206021 to 87206977 956 - lncRNA gene predicted gene, 41647
Tssr146180 17 87240944 to 87240947 3 + TSS region transcription start site region 146180