Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:87023029-88573049

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206 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pigf 17 86997256 to 87025406 28150 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class F
Tssr149753 17 87023408 to 87023411 3 - TSS region transcription start site region 149753
Cpgi9612 17 87024646 to 87025962 1316 CpG island CpG island 9612
Tssr149754 17 87025353 to 87025403 50 - TSS region transcription start site region 149754
Tssr149755 17 87025539 to 87025548 9 - TSS region transcription start site region 149755
Tssr146172 17 87025556 to 87025635 79 + TSS region transcription start site region 146172
Cript 17 87025561 to 87035808 10247 + protein coding gene cysteine-rich PDZ-binding protein
Gm30421 17 87039808 to 87050887 11079 - lncRNA gene predicted gene, 30421
Cpgi9613 17 87041736 to 87041987 251 CpG island CpG island 9613
Cpgi9614 17 87044497 to 87044681 184 CpG island CpG island 9614
Tssr149756 17 87050648 to 87050675 27 - TSS region transcription start site region 149756
Gm24648 17 87053694 to 87053825 131 - snoRNA gene predicted gene, 24648
Tssr146173 17 87078255 to 87078267 12 + TSS region transcription start site region 146173
Gm5499 17 87078271 to 87079155 884 + pseudogene predicted pseudogene 5499
Cpgi9615 17 87091492 to 87091782 290 CpG island CpG island 9615
Gm30510 17 87091755 to 87107347 15592 - lncRNA gene predicted gene, 30510
Tssr149757 17 87101055 to 87101059 4 - TSS region transcription start site region 149757
Cpgi9616 17 87106734 to 87108370 1636 CpG island CpG island 9616
Tssr5228 17 87107287 to 87107322 35 + TSS region transcription start site region 5228
Tssr146174 17 87107621 to 87107684 63 + TSS region transcription start site region 146174
Socs5 17 87107679 to 87137839 30160 + protein coding gene suppressor of cytokine signaling 5
Tssr146175 17 87107685 to 87107702 17 + TSS region transcription start site region 146175
Tssr146176 17 87116930 to 87116933 3 + TSS region transcription start site region 146176
Tssr146177 17 87119252 to 87119263 11 + TSS region transcription start site region 146177
Cpgi9617 17 87125335 to 87125698 363 CpG island CpG island 9617
Cpgi9618 17 87133951 to 87134127 176 CpG island CpG island 9618
Cpgi9619 17 87134580 to 87135154 574 CpG island CpG island 9619
Tssr146178 17 87145619 to 87145622 3 + TSS region transcription start site region 146178
Tssr146179 17 87174987 to 87174992 5 + TSS region transcription start site region 146179
Gm22346 17 87184105 to 87184225 120 - miRNA gene predicted gene, 22346
C330024C12Rik 17 87192216 to 87194942 2726 - lncRNA gene RIKEN cDNA C330024C12 gene
Tssr149758 17 87203366 to 87203368 2 - TSS region transcription start site region 149758
Gm41647 17 87206021 to 87206977 956 - lncRNA gene predicted gene, 41647
Tssr146180 17 87240944 to 87240947 3 + TSS region transcription start site region 146180
Mcfd2 17 87254443 to 87265935 11492 - protein coding gene multiple coagulation factor deficiency 2
Tssr149759 17 87264227 to 87264238 11 - TSS region transcription start site region 149759
Tssr149760 17 87264239 to 87264265 26 - TSS region transcription start site region 149760
Cpgi9620 17 87265336 to 87266318 982 CpG island CpG island 9620
Tssr149761 17 87265866 to 87265921 55 - TSS region transcription start site region 149761
Gm46586 17 87267539 to 87275371 7832 + lncRNA gene predicted gene, 46586
4833418N02Rik 17 87274886 to 87282814 7928 - lincRNA gene RIKEN cDNA 4833418N02 gene
Cpgi9621 17 87282108 to 87283957 1849 CpG island CpG island 9621
Tssr146181 17 87282624 to 87282640 16 + TSS region transcription start site region 146181
Tssr149762 17 87282771 to 87282786 15 - TSS region transcription start site region 149762
Tssr149763 17 87282793 to 87282821 28 - TSS region transcription start site region 149763
Tssr146182 17 87282880 to 87282950 70 + TSS region transcription start site region 146182
Ttc7 17 87282886 to 87381769 98883 + protein coding gene tetratricopeptide repeat domain 7
Tssr146183 17 87282998 to 87283012 14 + TSS region transcription start site region 146183
Tssr146184 17 87283202 to 87283220 18 + TSS region transcription start site region 146184
Tssr149764 17 87306914 to 87306954 40 - TSS region transcription start site region 149764
Cpgi9622 17 87325676 to 87325904 228 CpG island CpG island 9622
Gm15978 17 87329764 to 87332052 2288 - antisense lncRNA gene predicted gene 15978
Cpgi9623 17 87330134 to 87330529 395 CpG island CpG island 9623
Tssr149765 17 87332023 to 87332041 18 - TSS region transcription start site region 149765
Cpgi9624 17 87351659 to 87351887 228 CpG island CpG island 9624
0610012D04Rik 17 87362239 to 87364462 2223 - antisense lncRNA gene RIKEN cDNA 0610012D04 gene
Stpg4 17 87389571 to 87427741 38170 - protein coding gene sperm tail PG rich repeat containing 4
Ltpr7a 17 87393770 to 87393999 229 QTL Leishmania tropica response 7a
Ltpr7 17 87393770 to 87393999 229 QTL Leishmania tropica response 7
Ltpr7b 17 87393770 to 87393999 229 QTL Leishmania tropica response 7b
D17Mit130 17 87393770 to 87393999 229 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 130
Ltpr7c 17 87393770 to 87393999 229 QTL Leishmania tropica response 7c
Cpgi9625 17 87427489 to 87427911 422 CpG island CpG island 9625
Tssr149766 17 87427690 to 87427707 17 - TSS region transcription start site region 149766
Tssr149767 17 87427732 to 87427741 9 - TSS region transcription start site region 149767
Tssr149768 17 87427773 to 87427778 5 - TSS region transcription start site region 149768
Calm2 17 87433412 to 87446935 13523 - protein coding gene calmodulin 2
Tssr149769 17 87433939 to 87433950 11 - TSS region transcription start site region 149769
Tssr149770 17 87438519 to 87438536 17 - TSS region transcription start site region 149770
Tssr149771 17 87438673 to 87438690 17 - TSS region transcription start site region 149771
Tssr149772 17 87440915 to 87440920 5 - TSS region transcription start site region 149772
Cpgi9626 17 87445751 to 87447521 1770 CpG island CpG island 9626
Tssr146185 17 87446145 to 87446150 5 + TSS region transcription start site region 146185
Tssr146186 17 87446677 to 87446680 3 + TSS region transcription start site region 146186
Tssr149773 17 87446854 to 87446869 15 - TSS region transcription start site region 149773
Tssr146187 17 87447225 to 87447238 13 + TSS region transcription start site region 146187
Gm26005 17 87453223 to 87453356 133 - snoRNA gene predicted gene, 26005
Gm30794 17 87455103 to 87459462 4359 - lncRNA gene predicted gene, 30794
Tssr149774 17 87459453 to 87459483 30 - TSS region transcription start site region 149774
Gm30938 17 87464640 to 87473742 9102 - lncRNA gene predicted gene, 30938
Tssr149775 17 87473762 to 87473794 32 - TSS region transcription start site region 149775
Tssr149776 17 87473795 to 87473808 13 - TSS region transcription start site region 149776
Cpgi9627 17 87474016 to 87474634 618 CpG island CpG island 9627
Gm28676 17 87490748 to 87502616 11868 + lincRNA gene predicted gene 28676
Gm30984 17 87529503 to 87530744 1241 - lncRNA gene predicted gene, 30984
Tssr146188 17 87530918 to 87530925 7 + TSS region transcription start site region 146188
Gm46587 17 87559097 to 87570757 11660 - lncRNA gene predicted gene, 46587
Gm46609 17 87602393 to 87614830 12437 - lncRNA gene predicted gene, 46609
Tssr146189 17 87603628 to 87603674 46 + TSS region transcription start site region 146189
Cpgi9628 17 87609763 to 87610014 251 CpG island CpG island 9628
Tssr149777 17 87611631 to 87611635 4 - TSS region transcription start site region 149777
Tssr149778 17 87613424 to 87613433 9 - TSS region transcription start site region 149778
Tssr149779 17 87613488 to 87613509 21 - TSS region transcription start site region 149779
Tssr149780 17 87628243 to 87628256 13 - TSS region transcription start site region 149780
Tssr146190 17 87635974 to 87635990 16 + TSS region transcription start site region 146190
Epcam 17 87635979 to 87651127 15148 + protein coding gene epithelial cell adhesion molecule
Tssr146191 17 87636103 to 87636107 4 + TSS region transcription start site region 146191
Cpgi9629 17 87636196 to 87637309 1113 CpG island CpG island 9629
Tssr146192 17 87636682 to 87636698 16 + TSS region transcription start site region 146192
Tssr146193 17 87636710 to 87636737 27 + TSS region transcription start site region 146193
Tssr149781 17 87637099 to 87637109 10 - TSS region transcription start site region 149781
Tssr146194 17 87638410 to 87638415 5 + TSS region transcription start site region 146194
Tssr146195 17 87639880 to 87639890 10 + TSS region transcription start site region 146195
Tssr146196 17 87640310 to 87640323 13 + TSS region transcription start site region 146196
Tssr146197 17 87640371 to 87640390 19 + TSS region transcription start site region 146197
Tssr146198 17 87640445 to 87640463 18 + TSS region transcription start site region 146198
Tssr146199 17 87641429 to 87641476 47 + TSS region transcription start site region 146199
Tssr149782 17 87641465 to 87641500 35 - TSS region transcription start site region 149782
Tssr149783 17 87644720 to 87644744 24 - TSS region transcription start site region 149783
Tssr146200 17 87644874 to 87644889 15 + TSS region transcription start site region 146200
Tssr146201 17 87646139 to 87646152 13 + TSS region transcription start site region 146201
Tssr146202 17 87646249 to 87646260 11 + TSS region transcription start site region 146202
Tssr146203 17 87646270 to 87646292 22 + TSS region transcription start site region 146203
Tssr146204 17 87646301 to 87646313 12 + TSS region transcription start site region 146204
Tssr146205 17 87647512 to 87647516 4 + TSS region transcription start site region 146205
Tssr146206 17 87648342 to 87648345 3 + TSS region transcription start site region 146206
Tssr146207 17 87650432 to 87650448 16 + TSS region transcription start site region 146207
Tssr146208 17 87650452 to 87650466 14 + TSS region transcription start site region 146208
Tssr146209 17 87650491 to 87650530 39 + TSS region transcription start site region 146209
Tssr146210 17 87650565 to 87650580 15 + TSS region transcription start site region 146210
Tssr146211 17 87650822 to 87650827 5 + TSS region transcription start site region 146211
Cpgi9630 17 87672277 to 87673342 1065 CpG island CpG island 9630
Tssr146212 17 87672523 to 87672580 57 + TSS region transcription start site region 146212
Msh2 17 87672557 to 87723713 51156 + protein coding gene mutS homolog 2
Tssr146213 17 87673330 to 87673340 10 + TSS region transcription start site region 146213
Tssr149784 17 87682826 to 87682827 1 - TSS region transcription start site region 149784
Tssr149785 17 87691593 to 87691627 34 - TSS region transcription start site region 149785
Cpgi9631 17 87745476 to 87746974 1498 CpG island CpG island 9631
Kcnk12 17 87745821 to 87797994 52173 - protein coding gene potassium channel, subfamily K, member 12
Cpgi9632 17 87796768 to 87799143 2375 CpG island CpG island 9632
Tssr149786 17 87798029 to 87798049 20 - TSS region transcription start site region 149786
Tssr149787 17 87798055 to 87798090 35 - TSS region transcription start site region 149787
Gm41649 17 87801387 to 87811650 10263 + lncRNA gene predicted gene, 41649
Gm50039 17 87825073 to 87838997 13924 + lincRNA gene predicted gene, 50039
Tssr146214 17 87825917 to 87825925 8 + TSS region transcription start site region 146214
Cpgi9633 17 87826307 to 87826572 265 CpG island CpG island 9633
Cpgi9634 17 87826986 to 87827221 235 CpG island CpG island 9634
Tssr146215 17 87863419 to 87863424 5 + TSS region transcription start site region 146215
Rpl36-ps4 17 87921060 to 87921425 365 + pseudogene ribosomal protein L36, pseudogene 4
Gm50040 17 87949927 to 87950385 458 + pseudogene predicted gene, 50040
Gm50041 17 87969004 to 87969220 216 - pseudogene predicted gene, 50041
Cpgi9635 17 87974429 to 87975864 1435 CpG island CpG island 9635
Tssr149788 17 87974873 to 87974911 38 - TSS region transcription start site region 149788
Tssr146216 17 87975044 to 87975085 41 + TSS region transcription start site region 146216
Msh6 17 87975062 to 87990892 15830 + protein coding gene mutS homolog 6
Tssr146217 17 87975086 to 87975107 21 + TSS region transcription start site region 146217
Tssr146218 17 87984528 to 87984535 7 + TSS region transcription start site region 146218
Tssr146219 17 87986505 to 87986516 11 + TSS region transcription start site region 146219
Fbxo11 17 87990859 to 88065291 74432 - protein coding gene F-box protein 11
Tssr146220 17 88000789 to 88000790 1 + TSS region transcription start site region 146220
Tssr149789 17 88002526 to 88002539 13 - TSS region transcription start site region 149789
Tssr149790 17 88008885 to 88008891 6 - TSS region transcription start site region 149790
Tssr149791 17 88029487 to 88029491 4 - TSS region transcription start site region 149791
Tssr146221 17 88042696 to 88042741 45 + TSS region transcription start site region 146221
Tssr149792 17 88051737 to 88051741 4 - TSS region transcription start site region 149792
Tssr149793 17 88053667 to 88053688 21 - TSS region transcription start site region 149793
5930436O19Rik 17 88057629 to 88058998 1369 unclassified gene RIKEN cDNA 5930436O19 gene
Tssr149794 17 88058211 to 88058214 3 - TSS region transcription start site region 149794
Cpgi9636 17 88063988 to 88066645 2657 CpG island CpG island 9636
Tssr146222 17 88064780 to 88064801 21 + TSS region transcription start site region 146222
Tssr146223 17 88064818 to 88064829 11 + TSS region transcription start site region 146223
Tssr149795 17 88065638 to 88065729 91 - TSS region transcription start site region 149795
Tssr149796 17 88065771 to 88065831 60 - TSS region transcription start site region 149796
Tssr149797 17 88065852 to 88065873 21 - TSS region transcription start site region 149797
Tssr149798 17 88065982 to 88065993 11 - TSS region transcription start site region 149798
Tssr149799 17 88066004 to 88066087 83 - TSS region transcription start site region 149799
Gm45950 17 88066125 to 88090544 24419 + lncRNA gene predicted gene, 45950
Tssr146224 17 88112091 to 88112113 22 + TSS region transcription start site region 146224
Tssr146225 17 88112609 to 88112648 39 + TSS region transcription start site region 146225
Tssr5229 17 88113361 to 88113376 15 - TSS region transcription start site region 5229
Tssr149800 17 88113389 to 88113399 10 - TSS region transcription start site region 149800
Gm4832 17 88125512 to 88131113 5601 + pseudogene predicted gene 4832
Tssr146226 17 88130676 to 88130679 3 + TSS region transcription start site region 146226
Cpgi9637 17 88132979 to 88133281 302 CpG island CpG island 9637
Gm26612 17 88146084 to 88159761 13677 - lincRNA gene predicted gene, 26612
Gm31499 17 88168487 to 88170604 2117 + lncRNA gene predicted gene, 31499
Tssr146227 17 88191009 to 88191020 11 + TSS region transcription start site region 146227
Gm31615 17 88253483 to 88388699 135216 - lncRNA gene predicted gene, 31615
Cpgi9638 17 88255812 to 88256417 605 CpG island CpG island 9638
Gm41651 17 88273534 to 88354434 80900 + lncRNA gene predicted gene, 41651
1700116H05Rik 17 88296068 to 88307574 11506 - lncRNA gene RIKEN cDNA 1700116H05 gene
Tssr149801 17 88305332 to 88305353 21 - TSS region transcription start site region 149801
Tssr149802 17 88305385 to 88305398 13 - TSS region transcription start site region 149802
Gm22542 17 88342388 to 88342482 94 - snRNA gene predicted gene, 22542
Tssr149803 17 88388464 to 88388471 7 - TSS region transcription start site region 149803
Tssr149804 17 88388555 to 88388574 19 - TSS region transcription start site region 149804
Gm23947 17 88392826 to 88392932 106 - snRNA gene predicted gene, 23947
Tssr149805 17 88403475 to 88403489 14 - TSS region transcription start site region 149805
Cpgi9639 17 88405286 to 88405477 191 CpG island CpG island 9639
Cpgi9640 17 88440192 to 88441966 1774 CpG island CpG island 9640
Foxn2 17 88440712 to 88490533 49821 + protein coding gene forkhead box N2
Tssr146228 17 88440714 to 88440741 27 + TSS region transcription start site region 146228
Tssr146229 17 88440742 to 88440787 45 + TSS region transcription start site region 146229
Tssr146230 17 88441071 to 88441091 20 + TSS region transcription start site region 146230
Tssr146231 17 88441524 to 88441558 34 + TSS region transcription start site region 146231
Tssr149806 17 88441820 to 88441850 30 - TSS region transcription start site region 149806
Tssr146232 17 88479268 to 88479281 13 + TSS region transcription start site region 146232
Cpgi9641 17 88486451 to 88486848 397 CpG island CpG island 9641
Cpgi9642 17 88529663 to 88530636 973 CpG island CpG island 9642
Tssr146233 17 88530113 to 88530142 29 + TSS region transcription start site region 146233