Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:87014239-87514265

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pigf 17 86997256 to 87025406 28150 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class F
Tssr149753 17 87023408 to 87023411 3 - TSS region transcription start site region 149753
Cpgi9612 17 87024646 to 87025962 1316 CpG island CpG island 9612
Tssr149754 17 87025353 to 87025403 50 - TSS region transcription start site region 149754
Tssr149755 17 87025539 to 87025548 9 - TSS region transcription start site region 149755
Tssr146172 17 87025556 to 87025635 79 + TSS region transcription start site region 146172
Cript 17 87025561 to 87035808 10247 + protein coding gene cysteine-rich PDZ-binding protein
Gm30421 17 87039808 to 87050887 11079 - lncRNA gene predicted gene, 30421
Cpgi9613 17 87041736 to 87041987 251 CpG island CpG island 9613
Cpgi9614 17 87044497 to 87044681 184 CpG island CpG island 9614
Tssr149756 17 87050648 to 87050675 27 - TSS region transcription start site region 149756
Gm24648 17 87053694 to 87053825 131 - snoRNA gene predicted gene, 24648
Tssr146173 17 87078255 to 87078267 12 + TSS region transcription start site region 146173
Gm5499 17 87078271 to 87079155 884 + pseudogene predicted pseudogene 5499
Cpgi9615 17 87091492 to 87091782 290 CpG island CpG island 9615
Gm30510 17 87091755 to 87107347 15592 - lncRNA gene predicted gene, 30510
Tssr149757 17 87101055 to 87101059 4 - TSS region transcription start site region 149757
Cpgi9616 17 87106734 to 87108370 1636 CpG island CpG island 9616
Tssr5228 17 87107287 to 87107322 35 + TSS region transcription start site region 5228
Tssr146174 17 87107621 to 87107684 63 + TSS region transcription start site region 146174
Socs5 17 87107679 to 87137839 30160 + protein coding gene suppressor of cytokine signaling 5
Tssr146175 17 87107685 to 87107702 17 + TSS region transcription start site region 146175
Tssr146176 17 87116930 to 87116933 3 + TSS region transcription start site region 146176
Tssr146177 17 87119252 to 87119263 11 + TSS region transcription start site region 146177
Cpgi9617 17 87125335 to 87125698 363 CpG island CpG island 9617
Cpgi9618 17 87133951 to 87134127 176 CpG island CpG island 9618
Cpgi9619 17 87134580 to 87135154 574 CpG island CpG island 9619
Tssr146178 17 87145619 to 87145622 3 + TSS region transcription start site region 146178
Tssr146179 17 87174987 to 87174992 5 + TSS region transcription start site region 146179
Gm22346 17 87184105 to 87184225 120 - miRNA gene predicted gene, 22346
C330024C12Rik 17 87192216 to 87194942 2726 - lncRNA gene RIKEN cDNA C330024C12 gene
Tssr149758 17 87203366 to 87203368 2 - TSS region transcription start site region 149758
Gm41647 17 87206021 to 87206977 956 - lncRNA gene predicted gene, 41647
Tssr146180 17 87240944 to 87240947 3 + TSS region transcription start site region 146180
Mcfd2 17 87254443 to 87265935 11492 - protein coding gene multiple coagulation factor deficiency 2
Tssr149759 17 87264227 to 87264238 11 - TSS region transcription start site region 149759
Tssr149760 17 87264239 to 87264265 26 - TSS region transcription start site region 149760
Cpgi9620 17 87265336 to 87266318 982 CpG island CpG island 9620
Tssr149761 17 87265866 to 87265921 55 - TSS region transcription start site region 149761
Gm46586 17 87267539 to 87275371 7832 + lncRNA gene predicted gene, 46586
4833418N02Rik 17 87274886 to 87282814 7928 - lincRNA gene RIKEN cDNA 4833418N02 gene
Cpgi9621 17 87282108 to 87283957 1849 CpG island CpG island 9621
Tssr146181 17 87282624 to 87282640 16 + TSS region transcription start site region 146181
Tssr149762 17 87282771 to 87282786 15 - TSS region transcription start site region 149762
Tssr149763 17 87282793 to 87282821 28 - TSS region transcription start site region 149763
Tssr146182 17 87282880 to 87282950 70 + TSS region transcription start site region 146182
Ttc7 17 87282886 to 87381769 98883 + protein coding gene tetratricopeptide repeat domain 7
Tssr146183 17 87282998 to 87283012 14 + TSS region transcription start site region 146183
Tssr146184 17 87283202 to 87283220 18 + TSS region transcription start site region 146184
Tssr149764 17 87306914 to 87306954 40 - TSS region transcription start site region 149764
Cpgi9622 17 87325676 to 87325904 228 CpG island CpG island 9622
Gm15978 17 87329764 to 87332052 2288 - antisense lncRNA gene predicted gene 15978
Cpgi9623 17 87330134 to 87330529 395 CpG island CpG island 9623
Tssr149765 17 87332023 to 87332041 18 - TSS region transcription start site region 149765
Cpgi9624 17 87351659 to 87351887 228 CpG island CpG island 9624
0610012D04Rik 17 87362239 to 87364462 2223 - antisense lncRNA gene RIKEN cDNA 0610012D04 gene
Stpg4 17 87389571 to 87427741 38170 - protein coding gene sperm tail PG rich repeat containing 4
D17Mit130 17 87393770 to 87393999 229 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 130
Ltpr7c 17 87393770 to 87393999 229 QTL Leishmania tropica response 7c
Ltpr7b 17 87393770 to 87393999 229 QTL Leishmania tropica response 7b
Ltpr7a 17 87393770 to 87393999 229 QTL Leishmania tropica response 7a
Ltpr7 17 87393770 to 87393999 229 QTL Leishmania tropica response 7
Cpgi9625 17 87427489 to 87427911 422 CpG island CpG island 9625
Tssr149766 17 87427690 to 87427707 17 - TSS region transcription start site region 149766
Tssr149767 17 87427732 to 87427741 9 - TSS region transcription start site region 149767
Tssr149768 17 87427773 to 87427778 5 - TSS region transcription start site region 149768
Calm2 17 87433412 to 87446935 13523 - protein coding gene calmodulin 2
Tssr149769 17 87433939 to 87433950 11 - TSS region transcription start site region 149769
Tssr149770 17 87438519 to 87438536 17 - TSS region transcription start site region 149770
Tssr149771 17 87438673 to 87438690 17 - TSS region transcription start site region 149771
Tssr149772 17 87440915 to 87440920 5 - TSS region transcription start site region 149772
Cpgi9626 17 87445751 to 87447521 1770 CpG island CpG island 9626
Tssr146185 17 87446145 to 87446150 5 + TSS region transcription start site region 146185
Tssr146186 17 87446677 to 87446680 3 + TSS region transcription start site region 146186
Tssr149773 17 87446854 to 87446869 15 - TSS region transcription start site region 149773
Tssr146187 17 87447225 to 87447238 13 + TSS region transcription start site region 146187
Gm26005 17 87453223 to 87453356 133 - snoRNA gene predicted gene, 26005
Gm30794 17 87455103 to 87459462 4359 - lncRNA gene predicted gene, 30794
Tssr149774 17 87459453 to 87459483 30 - TSS region transcription start site region 149774
Gm30938 17 87464640 to 87473742 9102 - lncRNA gene predicted gene, 30938
Tssr149775 17 87473762 to 87473794 32 - TSS region transcription start site region 149775
Tssr149776 17 87473795 to 87473808 13 - TSS region transcription start site region 149776
Cpgi9627 17 87474016 to 87474634 618 CpG island CpG island 9627
Gm28676 17 87490748 to 87502616 11868 + lincRNA gene predicted gene 28676