Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:86823082-87140069

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Epas1 17 86753864 to 86833410 79546 + protein coding gene endothelial PAS domain protein 1
Tssr146135 17 86823690 to 86823705 15 + TSS region transcription start site region 146135
Tssr146136 17 86823755 to 86823777 22 + TSS region transcription start site region 146136
Tssr146137 17 86824570 to 86824591 21 + TSS region transcription start site region 146137
Tssr146138 17 86825648 to 86825663 15 + TSS region transcription start site region 146138
Tssr149746 17 86827546 to 86827567 21 - TSS region transcription start site region 149746
Tssr146139 17 86829393 to 86829434 41 + TSS region transcription start site region 146139
Tssr146140 17 86830972 to 86830977 5 + TSS region transcription start site region 146140
Tssr146141 17 86831059 to 86831073 14 + TSS region transcription start site region 146141
Tssr146142 17 86831116 to 86831128 12 + TSS region transcription start site region 146142
Tssr146143 17 86831233 to 86831244 11 + TSS region transcription start site region 146143
Tssr146144 17 86831248 to 86831270 22 + TSS region transcription start site region 146144
Tssr149747 17 86831277 to 86831285 8 - TSS region transcription start site region 149747
Tssr146145 17 86831292 to 86831299 7 + TSS region transcription start site region 146145
Tssr146146 17 86831313 to 86831324 11 + TSS region transcription start site region 146146
Tssr146147 17 86831344 to 86831351 7 + TSS region transcription start site region 146147
Tssr149748 17 86831345 to 86831369 24 - TSS region transcription start site region 149748
Tssr146148 17 86831354 to 86831373 19 + TSS region transcription start site region 146148
Tssr146149 17 86831415 to 86831426 11 + TSS region transcription start site region 146149
Tssr146150 17 86831429 to 86831438 9 + TSS region transcription start site region 146150
Tssr146151 17 86831448 to 86831468 20 + TSS region transcription start site region 146151
Tssr146152 17 86831473 to 86831492 19 + TSS region transcription start site region 146152
Tssr146153 17 86831520 to 86831567 47 + TSS region transcription start site region 146153
Tssr146154 17 86831618 to 86831621 3 + TSS region transcription start site region 146154
Gm29168 17 86840030 to 86840716 686 + lincRNA gene predicted gene 29168
Tssr146155 17 86855690 to 86855695 5 + TSS region transcription start site region 146155
Tssr149749 17 86880440 to 86880446 6 - TSS region transcription start site region 149749
4933423N03Rik 17 86915620 to 86917259 1639 unclassified gene RIKEN cDNA 4933423N03 gene
Tmem247 17 86917348 to 86922367 5019 + protein coding gene transmembrane protein 247
Tssr146156 17 86917399 to 86917438 39 + TSS region transcription start site region 146156
Tssr146157 17 86917441 to 86917458 17 + TSS region transcription start site region 146157
Gm50011 17 86928973 to 86944709 15736 + lincRNA gene predicted gene, 50011
Cpgi9610 17 86937754 to 86937972 218 CpG island CpG island 9610
Atp6v1e2 17 86944109 to 86947887 3778 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit E2
Tssr149750 17 86947867 to 86947901 34 - TSS region transcription start site region 149750
Tssr149751 17 86958001 to 86958018 17 - TSS region transcription start site region 149751
Tssr146158 17 86961482 to 86961522 40 + TSS region transcription start site region 146158
Cpgi9611 17 86962248 to 86964029 1781 CpG island CpG island 9611
Tssr146159 17 86962668 to 86962687 19 + TSS region transcription start site region 146159
Tssr146160 17 86963077 to 86963094 17 + TSS region transcription start site region 146160
Rhoq 17 86963082 to 87000069 36987 + protein coding gene ras homolog family member Q
Tssr146161 17 86963246 to 86963268 22 + TSS region transcription start site region 146161
Tssr146162 17 86963279 to 86963303 24 + TSS region transcription start site region 146162
Tssr146163 17 86963318 to 86963329 11 + TSS region transcription start site region 146163
Tssr146164 17 86963330 to 86963346 16 + TSS region transcription start site region 146164
Tssr146165 17 86963399 to 86963410 11 + TSS region transcription start site region 146165
Tssr146166 17 86964315 to 86964323 8 + TSS region transcription start site region 146166
Gm50012 17 86970372 to 86975288 4916 + sense intronic lncRNA gene predicted gene, 50012
Tssr146167 17 86980933 to 86980939 6 + TSS region transcription start site region 146167
Tssr146168 17 86981083 to 86981097 14 + TSS region transcription start site region 146168
Tssr146169 17 86981115 to 86981126 11 + TSS region transcription start site region 146169
Tssr149752 17 86987153 to 86987158 5 - TSS region transcription start site region 149752
Tssr146170 17 86993746 to 86993768 22 + TSS region transcription start site region 146170
Pigf 17 86997256 to 87025406 28150 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class F
Tssr146171 17 86997842 to 86997856 14 + TSS region transcription start site region 146171
Tssr149753 17 87023408 to 87023411 3 - TSS region transcription start site region 149753
Cpgi9612 17 87024646 to 87025962 1316 CpG island CpG island 9612
Tssr149754 17 87025353 to 87025403 50 - TSS region transcription start site region 149754
Tssr149755 17 87025539 to 87025548 9 - TSS region transcription start site region 149755
Tssr146172 17 87025556 to 87025635 79 + TSS region transcription start site region 146172
Cript 17 87025561 to 87035808 10247 + protein coding gene cysteine-rich PDZ-binding protein
Gm30421 17 87039808 to 87050887 11079 - lncRNA gene predicted gene, 30421
Cpgi9613 17 87041736 to 87041987 251 CpG island CpG island 9613
Cpgi9614 17 87044497 to 87044681 184 CpG island CpG island 9614
Tssr149756 17 87050648 to 87050675 27 - TSS region transcription start site region 149756
Gm24648 17 87053694 to 87053825 131 - snoRNA gene predicted gene, 24648
Tssr146173 17 87078255 to 87078267 12 + TSS region transcription start site region 146173
Gm5499 17 87078271 to 87079155 884 + pseudogene predicted pseudogene 5499
Cpgi9615 17 87091492 to 87091782 290 CpG island CpG island 9615
Gm30510 17 87091755 to 87107347 15592 - lncRNA gene predicted gene, 30510
Tssr149757 17 87101055 to 87101059 4 - TSS region transcription start site region 149757
Cpgi9616 17 87106734 to 87108370 1636 CpG island CpG island 9616
Tssr5228 17 87107287 to 87107322 35 + TSS region transcription start site region 5228
Tssr146174 17 87107621 to 87107684 63 + TSS region transcription start site region 146174
Socs5 17 87107679 to 87137839 30160 + protein coding gene suppressor of cytokine signaling 5
Tssr146175 17 87107685 to 87107702 17 + TSS region transcription start site region 146175
Tssr146176 17 87116930 to 87116933 3 + TSS region transcription start site region 146176
Tssr146177 17 87119252 to 87119263 11 + TSS region transcription start site region 146177
Cpgi9617 17 87125335 to 87125698 363 CpG island CpG island 9617
Cpgi9618 17 87133951 to 87134127 176 CpG island CpG island 9618
Cpgi9619 17 87134580 to 87135154 574 CpG island CpG island 9619