Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:86370544-87050594

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkce 17 86167785 to 86657919 490134 + protein coding gene protein kinase C, epsilon
Tssr149736 17 86403970 to 86403971 1 - TSS region transcription start site region 149736
Cpgi9608 17 86418529 to 86418758 229 CpG island CpG island 9608
Tssr146113 17 86424181 to 86424211 30 + TSS region transcription start site region 146113
Gm30284 17 86425220 to 86444893 19673 - lncRNA gene predicted gene, 30284
Tssr146114 17 86428798 to 86428829 31 + TSS region transcription start site region 146114
Tssr146115 17 86439017 to 86439030 13 + TSS region transcription start site region 146115
Tssr149737 17 86444864 to 86444904 40 - TSS region transcription start site region 149737
Gm10309 17 86497732 to 86505232 7500 - protein coding gene predicted gene 10309
Tssr5225 17 86505218 to 86505225 7 - TSS region transcription start site region 5225
Tssr5226 17 86652962 to 86652964 2 - TSS region transcription start site region 5226
Tssr146116 17 86656693 to 86656698 5 + TSS region transcription start site region 146116
Tssr5227 17 86667963 to 86667969 6 + TSS region transcription start site region 5227
Gm18832 17 86684754 to 86685494 740 - pseudogene predicted gene, 18832
D17Mit129 17 86688824 to 86688972 148 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 129
Lmr1 17 86688972 to 9862411 -76826561 QTL leishmaniasis resistance 1
Gm22235 17 86703298 to 86703407 109 - snRNA gene predicted gene, 22235
Tssr149738 17 86710473 to 86710507 34 - TSS region transcription start site region 149738
Tssr149739 17 86710544 to 86710594 50 - TSS region transcription start site region 149739
Cpgi9609 17 86753009 to 86755601 2592 CpG island CpG island 9609
Tssr149740 17 86753418 to 86753451 33 - TSS region transcription start site region 149740
Tssr149741 17 86753466 to 86753480 14 - TSS region transcription start site region 149741
Tssr146117 17 86753667 to 86753672 5 + TSS region transcription start site region 146117
Tssr146118 17 86753688 to 86753709 21 + TSS region transcription start site region 146118
Tssr146119 17 86753809 to 86753820 11 + TSS region transcription start site region 146119
Tssr146120 17 86753836 to 86753847 11 + TSS region transcription start site region 146120
Epas1 17 86753864 to 86833410 79546 + protein coding gene endothelial PAS domain protein 1
Tssr146121 17 86753900 to 86753914 14 + TSS region transcription start site region 146121
Tssr146122 17 86754084 to 86754093 9 + TSS region transcription start site region 146122
Tssr146123 17 86754100 to 86754111 11 + TSS region transcription start site region 146123
Tssr146124 17 86754122 to 86754133 11 + TSS region transcription start site region 146124
Tssr146125 17 86754153 to 86754160 7 + TSS region transcription start site region 146125
Tssr146126 17 86754165 to 86754176 11 + TSS region transcription start site region 146126
Tssr146127 17 86754179 to 86754193 14 + TSS region transcription start site region 146127
Tssr146128 17 86760436 to 86760447 11 + TSS region transcription start site region 146128
Gm50008 17 86773270 to 86774648 1378 + unclassified gene predicted gene, 50008
Tssr146129 17 86778501 to 86778505 4 + TSS region transcription start site region 146129
Tssr146130 17 86778729 to 86778757 28 + TSS region transcription start site region 146130
Tssr146131 17 86778760 to 86778781 21 + TSS region transcription start site region 146131
Tssr149742 17 86798898 to 86798900 2 - TSS region transcription start site region 149742
Tssr149743 17 86802711 to 86802717 6 - TSS region transcription start site region 149743
Tssr146132 17 86809600 to 86809630 30 + TSS region transcription start site region 146132
Tssr146133 17 86809711 to 86809740 29 + TSS region transcription start site region 146133
Tssr149744 17 86810991 to 86810994 3 - TSS region transcription start site region 149744
Tssr149745 17 86811001 to 86811022 21 - TSS region transcription start site region 149745
Tssr146134 17 86821155 to 86821159 4 + TSS region transcription start site region 146134
Tssr146135 17 86823690 to 86823705 15 + TSS region transcription start site region 146135
Tssr146136 17 86823755 to 86823777 22 + TSS region transcription start site region 146136
Tssr146137 17 86824570 to 86824591 21 + TSS region transcription start site region 146137
Tssr146138 17 86825648 to 86825663 15 + TSS region transcription start site region 146138
Tssr149746 17 86827546 to 86827567 21 - TSS region transcription start site region 149746
Tssr146139 17 86829393 to 86829434 41 + TSS region transcription start site region 146139
Tssr146140 17 86830972 to 86830977 5 + TSS region transcription start site region 146140
Tssr146141 17 86831059 to 86831073 14 + TSS region transcription start site region 146141
Tssr146142 17 86831116 to 86831128 12 + TSS region transcription start site region 146142
Tssr146143 17 86831233 to 86831244 11 + TSS region transcription start site region 146143
Tssr146144 17 86831248 to 86831270 22 + TSS region transcription start site region 146144
Tssr149747 17 86831277 to 86831285 8 - TSS region transcription start site region 149747
Tssr146145 17 86831292 to 86831299 7 + TSS region transcription start site region 146145
Tssr146146 17 86831313 to 86831324 11 + TSS region transcription start site region 146146
Tssr146147 17 86831344 to 86831351 7 + TSS region transcription start site region 146147
Tssr149748 17 86831345 to 86831369 24 - TSS region transcription start site region 149748
Tssr146148 17 86831354 to 86831373 19 + TSS region transcription start site region 146148
Tssr146149 17 86831415 to 86831426 11 + TSS region transcription start site region 146149
Tssr146150 17 86831429 to 86831438 9 + TSS region transcription start site region 146150
Tssr146151 17 86831448 to 86831468 20 + TSS region transcription start site region 146151
Tssr146152 17 86831473 to 86831492 19 + TSS region transcription start site region 146152
Tssr146153 17 86831520 to 86831567 47 + TSS region transcription start site region 146153
Tssr146154 17 86831618 to 86831621 3 + TSS region transcription start site region 146154
Gm29168 17 86840030 to 86840716 686 + lincRNA gene predicted gene 29168
Tssr146155 17 86855690 to 86855695 5 + TSS region transcription start site region 146155
Tssr149749 17 86880440 to 86880446 6 - TSS region transcription start site region 149749
4933423N03Rik 17 86915620 to 86917259 1639 unclassified gene RIKEN cDNA 4933423N03 gene
Tmem247 17 86917348 to 86922367 5019 + protein coding gene transmembrane protein 247
Tssr146156 17 86917399 to 86917438 39 + TSS region transcription start site region 146156
Tssr146157 17 86917441 to 86917458 17 + TSS region transcription start site region 146157
Gm50011 17 86928973 to 86944709 15736 + lincRNA gene predicted gene, 50011
Cpgi9610 17 86937754 to 86937972 218 CpG island CpG island 9610
Atp6v1e2 17 86944109 to 86947887 3778 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit E2
Tssr149750 17 86947867 to 86947901 34 - TSS region transcription start site region 149750
Tssr149751 17 86958001 to 86958018 17 - TSS region transcription start site region 149751
Tssr146158 17 86961482 to 86961522 40 + TSS region transcription start site region 146158
Cpgi9611 17 86962248 to 86964029 1781 CpG island CpG island 9611
Tssr146159 17 86962668 to 86962687 19 + TSS region transcription start site region 146159
Tssr146160 17 86963077 to 86963094 17 + TSS region transcription start site region 146160
Rhoq 17 86963082 to 87000069 36987 + protein coding gene ras homolog family member Q
Tssr146161 17 86963246 to 86963268 22 + TSS region transcription start site region 146161
Tssr146162 17 86963279 to 86963303 24 + TSS region transcription start site region 146162
Tssr146163 17 86963318 to 86963329 11 + TSS region transcription start site region 146163
Tssr146164 17 86963330 to 86963346 16 + TSS region transcription start site region 146164
Tssr146165 17 86963399 to 86963410 11 + TSS region transcription start site region 146165
Tssr146166 17 86964315 to 86964323 8 + TSS region transcription start site region 146166
Gm50012 17 86970372 to 86975288 4916 + sense intronic lncRNA gene predicted gene, 50012
Tssr146167 17 86980933 to 86980939 6 + TSS region transcription start site region 146167
Tssr146168 17 86981083 to 86981097 14 + TSS region transcription start site region 146168
Tssr146169 17 86981115 to 86981126 11 + TSS region transcription start site region 146169
Tssr149752 17 86987153 to 86987158 5 - TSS region transcription start site region 149752
Tssr146170 17 86993746 to 86993768 22 + TSS region transcription start site region 146170
Pigf 17 86997256 to 87025406 28150 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class F
Tssr146171 17 86997842 to 86997856 14 + TSS region transcription start site region 146171
Tssr149753 17 87023408 to 87023411 3 - TSS region transcription start site region 149753
Cpgi9612 17 87024646 to 87025962 1316 CpG island CpG island 9612
Tssr149754 17 87025353 to 87025403 50 - TSS region transcription start site region 149754
Tssr149755 17 87025539 to 87025548 9 - TSS region transcription start site region 149755
Tssr146172 17 87025556 to 87025635 79 + TSS region transcription start site region 146172
Cript 17 87025561 to 87035808 10247 + protein coding gene cysteine-rich PDZ-binding protein
Gm30421 17 87039808 to 87050887 11079 - lncRNA gene predicted gene, 30421
Cpgi9613 17 87041736 to 87041987 251 CpG island CpG island 9613
Cpgi9614 17 87044497 to 87044681 184 CpG island CpG island 9614