Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:85670401-86790744

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi9597 17 85680827 to 85681012 185 CpG island CpG island 9597
Cpgi9598 17 85683693 to 85683870 177 CpG island CpG island 9598
Six2 17 85684277 to 85688274 3997 - protein coding gene sine oculis-related homeobox 2
Cpgi9599 17 85684984 to 85685613 629 CpG island CpG island 9599
Cpgi9600 17 85687018 to 85689476 2458 CpG island CpG island 9600
Tssr149720 17 85688241 to 85688248 7 - TSS region transcription start site region 149720
Tssr149721 17 85688252 to 85688275 23 - TSS region transcription start site region 149721
Tssr149722 17 85688963 to 85688967 4 - TSS region transcription start site region 149722
Tssr146100 17 85691141 to 85691162 21 + TSS region transcription start site region 146100
Tssr146101 17 85691171 to 85691195 24 + TSS region transcription start site region 146101
Tssr146102 17 85691240 to 85691258 18 + TSS region transcription start site region 146102
Cpgi9601 17 85691901 to 85693173 1272 CpG island CpG island 9601
CJ186046Rik 17 85693629 to 85713028 19399 + lncRNA gene Riken cDNA CJ186046 gene
3110013M02Rik 17 85726683 to 85727017 334 unclassified gene RIKEN cDNA 3110013M02 gene
D17Mit190 17 85729026 to 85729132 106 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 190
Gm41644 17 85756129 to 85767246 11117 + lncRNA gene predicted gene, 41644
Gm41645 17 85769472 to 85780502 11030 - lncRNA gene predicted gene, 41645
Gm29418 17 85796168 to 85799994 3826 - lincRNA gene predicted gene 29418
Cpgi9602 17 85799680 to 85801090 1410 CpG island CpG island 9602
Gm4718 17 85799882 to 85802936 3054 protein coding gene predicted gene 4718
Tssr149723 17 85800416 to 85800427 11 - TSS region transcription start site region 149723
Gm30117 17 85862235 to 85928579 66344 - lncRNA gene predicted gene, 30117
Tssr149724 17 85928563 to 85928582 19 - TSS region transcription start site region 149724
Srbd1 17 85984665 to 86145175 160510 - protein coding gene S1 RNA binding domain 1
D17Mit212 17 86009698 to 86009800 102 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 212
D17Mit212.2 17 86009801 to 86009949 148 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 212.2
Tssr149725 17 86075330 to 86075335 5 - TSS region transcription start site region 149725
Cpgi9603 17 86144505 to 86145515 1010 CpG island CpG island 9603
Tssr149726 17 86145139 to 86145184 45 - TSS region transcription start site region 149726
Tssr149727 17 86161980 to 86162003 23 - TSS region transcription start site region 149727
Cpgi9604 17 86161989 to 86162147 158 CpG island CpG island 9604
Tssr149728 17 86162011 to 86162020 9 - TSS region transcription start site region 149728
Gm5817 17 86165460 to 86168022 2562 unclassified non-coding RNA gene predicted gene 5817
Cpgi9605 17 86166218 to 86169220 3002 CpG island CpG island 9605
Tssr149729 17 86167449 to 86167493 44 - TSS region transcription start site region 149729
Tssr146103 17 86167597 to 86167617 20 + TSS region transcription start site region 146103
Tssr146104 17 86167620 to 86167683 63 + TSS region transcription start site region 146104
Tssr146105 17 86167777 to 86167795 18 + TSS region transcription start site region 146105
Prkce 17 86167785 to 86657919 490134 + protein coding gene protein kinase C, epsilon
Tssr146106 17 86167818 to 86167825 7 + TSS region transcription start site region 146106
Tssr146107 17 86168424 to 86168439 15 + TSS region transcription start site region 146107
Tssr5224 17 86223574 to 86223591 17 + TSS region transcription start site region 5224
Tssr146108 17 86223680 to 86223691 11 + TSS region transcription start site region 146108
Tssr149730 17 86230255 to 86230266 11 - TSS region transcription start site region 149730
Tssr149731 17 86230348 to 86230361 13 - TSS region transcription start site region 149731
Tssr149732 17 86230375 to 86230379 4 - TSS region transcription start site region 149732
Tssr149733 17 86230384 to 86230411 27 - TSS region transcription start site region 149733
Cpgi9606 17 86230401 to 86230744 343 CpG island CpG island 9606
Tssr149734 17 86230416 to 86230423 7 - TSS region transcription start site region 149734
4930453J04Rik 17 86230485 to 86232697 2212 unclassified gene RIKEN cDNA 4930453J04 gene
Tssr146109 17 86232742 to 86232753 11 + TSS region transcription start site region 146109
Cpgi9607 17 86257852 to 86258561 709 CpG island CpG island 9607
2010106C02Rik 17 86285167 to 86287178 2011 - antisense lncRNA gene RIKEN cDNA 2010106C02 gene
Tssr146110 17 86338582 to 86338595 13 + TSS region transcription start site region 146110
Tssr146111 17 86338602 to 86338613 11 + TSS region transcription start site region 146111
Tssr149735 17 86353852 to 86353867 15 - TSS region transcription start site region 149735
Tssr146112 17 86360321 to 86360335 14 + TSS region transcription start site region 146112
Tssr149736 17 86403970 to 86403971 1 - TSS region transcription start site region 149736
Cpgi9608 17 86418529 to 86418758 229 CpG island CpG island 9608
Tssr146113 17 86424181 to 86424211 30 + TSS region transcription start site region 146113
Gm30284 17 86425220 to 86444893 19673 - lncRNA gene predicted gene, 30284
Tssr146114 17 86428798 to 86428829 31 + TSS region transcription start site region 146114
Tssr146115 17 86439017 to 86439030 13 + TSS region transcription start site region 146115
Tssr149737 17 86444864 to 86444904 40 - TSS region transcription start site region 149737
Gm10309 17 86497732 to 86505232 7500 - protein coding gene predicted gene 10309
Tssr5225 17 86505218 to 86505225 7 - TSS region transcription start site region 5225
Tssr5226 17 86652962 to 86652964 2 - TSS region transcription start site region 5226
Tssr146116 17 86656693 to 86656698 5 + TSS region transcription start site region 146116
Tssr5227 17 86667963 to 86667969 6 + TSS region transcription start site region 5227
Gm18832 17 86684754 to 86685494 740 - pseudogene predicted gene, 18832
D17Mit129 17 86688824 to 86688972 148 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 129
Lmr1 17 86688972 to 9862411 -76826561 QTL leishmaniasis resistance 1
Gm22235 17 86703298 to 86703407 109 - snRNA gene predicted gene, 22235
Tssr149738 17 86710473 to 86710507 34 - TSS region transcription start site region 149738
Tssr149739 17 86710544 to 86710594 50 - TSS region transcription start site region 149739
Cpgi9609 17 86753009 to 86755601 2592 CpG island CpG island 9609
Tssr149740 17 86753418 to 86753451 33 - TSS region transcription start site region 149740
Tssr149741 17 86753466 to 86753480 14 - TSS region transcription start site region 149741
Tssr146117 17 86753667 to 86753672 5 + TSS region transcription start site region 146117
Tssr146118 17 86753688 to 86753709 21 + TSS region transcription start site region 146118
Tssr146119 17 86753809 to 86753820 11 + TSS region transcription start site region 146119
Tssr146120 17 86753836 to 86753847 11 + TSS region transcription start site region 146120
Epas1 17 86753864 to 86833410 79546 + protein coding gene endothelial PAS domain protein 1
Tssr146121 17 86753900 to 86753914 14 + TSS region transcription start site region 146121
Tssr146122 17 86754084 to 86754093 9 + TSS region transcription start site region 146122
Tssr146123 17 86754100 to 86754111 11 + TSS region transcription start site region 146123
Tssr146124 17 86754122 to 86754133 11 + TSS region transcription start site region 146124
Tssr146125 17 86754153 to 86754160 7 + TSS region transcription start site region 146125
Tssr146126 17 86754165 to 86754176 11 + TSS region transcription start site region 146126
Tssr146127 17 86754179 to 86754193 14 + TSS region transcription start site region 146127
Tssr146128 17 86760436 to 86760447 11 + TSS region transcription start site region 146128
Gm50008 17 86773270 to 86774648 1378 + unclassified gene predicted gene, 50008
Tssr146129 17 86778501 to 86778505 4 + TSS region transcription start site region 146129
Tssr146130 17 86778729 to 86778757 28 + TSS region transcription start site region 146130
Tssr146131 17 86778760 to 86778781 21 + TSS region transcription start site region 146131