Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:85620972-88040977

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331 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Six3 17 85613608 to 85626191 12583 + protein coding gene sine oculis-related homeobox 3
Gm28528 17 85619326 to 85621001 1675 - antisense lncRNA gene predicted gene 28528
Cpgi9593 17 85620753 to 85622331 1578 CpG island CpG island 9593
Tssr146090 17 85620953 to 85620978 25 + TSS region transcription start site region 146090
Tssr146091 17 85620996 to 85621012 16 + TSS region transcription start site region 146091
Tssr146092 17 85621017 to 85621026 9 + TSS region transcription start site region 146092
Tssr5221 17 85621031 to 85621041 10 + TSS region transcription start site region 5221
Tssr5222 17 85621071 to 85621089 18 - TSS region transcription start site region 5222
Tssr146093 17 85621128 to 85621164 36 + TSS region transcription start site region 146093
Tssr146094 17 85621170 to 85621249 79 + TSS region transcription start site region 146094
Tssr5223 17 85621284 to 85621294 10 + TSS region transcription start site region 5223
Tssr146095 17 85621304 to 85621325 21 + TSS region transcription start site region 146095
Cpgi9594 17 85623442 to 85624184 742 CpG island CpG island 9594
Tssr146096 17 85623919 to 85623963 44 + TSS region transcription start site region 146096
Tssr146097 17 85623969 to 85624035 66 + TSS region transcription start site region 146097
Tssr146098 17 85624209 to 85624222 13 + TSS region transcription start site region 146098
Tssr146099 17 85629109 to 85629133 24 + TSS region transcription start site region 146099
Cpgi9595 17 85630508 to 85630681 173 CpG island CpG island 9595
Nilac12 17 85633891 to 85634014 123 QTL nicotine induced locomotor activity 12
D17Mit76 17 85633891 to 85634014 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 76
D17Dcr25 17 85633895 to 85634024 129 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 25
Cpgi9596 17 85645751 to 85646037 286 CpG island CpG island 9596
D17Mit211 17 85656857 to 85656966 109 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 211
Cpgi9597 17 85680827 to 85681012 185 CpG island CpG island 9597
Cpgi9598 17 85683693 to 85683870 177 CpG island CpG island 9598
Six2 17 85684277 to 85688274 3997 - protein coding gene sine oculis-related homeobox 2
Cpgi9599 17 85684984 to 85685613 629 CpG island CpG island 9599
Cpgi9600 17 85687018 to 85689476 2458 CpG island CpG island 9600
Tssr149720 17 85688241 to 85688248 7 - TSS region transcription start site region 149720
Tssr149721 17 85688252 to 85688275 23 - TSS region transcription start site region 149721
Tssr149722 17 85688963 to 85688967 4 - TSS region transcription start site region 149722
Tssr146100 17 85691141 to 85691162 21 + TSS region transcription start site region 146100
Tssr146101 17 85691171 to 85691195 24 + TSS region transcription start site region 146101
Tssr146102 17 85691240 to 85691258 18 + TSS region transcription start site region 146102
Cpgi9601 17 85691901 to 85693173 1272 CpG island CpG island 9601
CJ186046Rik 17 85693629 to 85713028 19399 + lncRNA gene Riken cDNA CJ186046 gene
3110013M02Rik 17 85726683 to 85727017 334 unclassified gene RIKEN cDNA 3110013M02 gene
D17Mit190 17 85729026 to 85729132 106 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 190
Gm41644 17 85756129 to 85767246 11117 + lncRNA gene predicted gene, 41644
Gm41645 17 85769472 to 85780502 11030 - lncRNA gene predicted gene, 41645
Gm29418 17 85796168 to 85799994 3826 - lincRNA gene predicted gene 29418
Cpgi9602 17 85799680 to 85801090 1410 CpG island CpG island 9602
Gm4718 17 85799882 to 85802936 3054 protein coding gene predicted gene 4718
Tssr149723 17 85800416 to 85800427 11 - TSS region transcription start site region 149723
Gm30117 17 85862235 to 85928579 66344 - lncRNA gene predicted gene, 30117
Tssr149724 17 85928563 to 85928582 19 - TSS region transcription start site region 149724
Srbd1 17 85984665 to 86145175 160510 - protein coding gene S1 RNA binding domain 1
D17Mit212 17 86009698 to 86009800 102 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 212
D17Mit212.2 17 86009801 to 86009949 148 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 212.2
Tssr149725 17 86075330 to 86075335 5 - TSS region transcription start site region 149725
Cpgi9603 17 86144505 to 86145515 1010 CpG island CpG island 9603
Tssr149726 17 86145139 to 86145184 45 - TSS region transcription start site region 149726
Tssr149727 17 86161980 to 86162003 23 - TSS region transcription start site region 149727
Cpgi9604 17 86161989 to 86162147 158 CpG island CpG island 9604
Tssr149728 17 86162011 to 86162020 9 - TSS region transcription start site region 149728
Gm5817 17 86165460 to 86168022 2562 unclassified non-coding RNA gene predicted gene 5817
Cpgi9605 17 86166218 to 86169220 3002 CpG island CpG island 9605
Tssr149729 17 86167449 to 86167493 44 - TSS region transcription start site region 149729
Tssr146103 17 86167597 to 86167617 20 + TSS region transcription start site region 146103
Tssr146104 17 86167620 to 86167683 63 + TSS region transcription start site region 146104
Tssr146105 17 86167777 to 86167795 18 + TSS region transcription start site region 146105
Prkce 17 86167785 to 86657919 490134 + protein coding gene protein kinase C, epsilon
Tssr146106 17 86167818 to 86167825 7 + TSS region transcription start site region 146106
Tssr146107 17 86168424 to 86168439 15 + TSS region transcription start site region 146107
Tssr5224 17 86223574 to 86223591 17 + TSS region transcription start site region 5224
Tssr146108 17 86223680 to 86223691 11 + TSS region transcription start site region 146108
Tssr149730 17 86230255 to 86230266 11 - TSS region transcription start site region 149730
Tssr149731 17 86230348 to 86230361 13 - TSS region transcription start site region 149731
Tssr149732 17 86230375 to 86230379 4 - TSS region transcription start site region 149732
Tssr149733 17 86230384 to 86230411 27 - TSS region transcription start site region 149733
Cpgi9606 17 86230401 to 86230744 343 CpG island CpG island 9606
Tssr149734 17 86230416 to 86230423 7 - TSS region transcription start site region 149734
4930453J04Rik 17 86230485 to 86232697 2212 unclassified gene RIKEN cDNA 4930453J04 gene
Tssr146109 17 86232742 to 86232753 11 + TSS region transcription start site region 146109
Cpgi9607 17 86257852 to 86258561 709 CpG island CpG island 9607
2010106C02Rik 17 86285167 to 86287178 2011 - antisense lncRNA gene RIKEN cDNA 2010106C02 gene
Tssr146110 17 86338582 to 86338595 13 + TSS region transcription start site region 146110
Tssr146111 17 86338602 to 86338613 11 + TSS region transcription start site region 146111
Tssr149735 17 86353852 to 86353867 15 - TSS region transcription start site region 149735
Tssr146112 17 86360321 to 86360335 14 + TSS region transcription start site region 146112
Tssr149736 17 86403970 to 86403971 1 - TSS region transcription start site region 149736
Cpgi9608 17 86418529 to 86418758 229 CpG island CpG island 9608
Tssr146113 17 86424181 to 86424211 30 + TSS region transcription start site region 146113
Gm30284 17 86425220 to 86444893 19673 - lncRNA gene predicted gene, 30284
Tssr146114 17 86428798 to 86428829 31 + TSS region transcription start site region 146114
Tssr146115 17 86439017 to 86439030 13 + TSS region transcription start site region 146115
Tssr149737 17 86444864 to 86444904 40 - TSS region transcription start site region 149737
Gm10309 17 86497732 to 86505232 7500 - protein coding gene predicted gene 10309
Tssr5225 17 86505218 to 86505225 7 - TSS region transcription start site region 5225
Tssr5226 17 86652962 to 86652964 2 - TSS region transcription start site region 5226
Tssr146116 17 86656693 to 86656698 5 + TSS region transcription start site region 146116
Tssr5227 17 86667963 to 86667969 6 + TSS region transcription start site region 5227
Gm18832 17 86684754 to 86685494 740 - pseudogene predicted gene, 18832
D17Mit129 17 86688824 to 86688972 148 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 129
Lmr1 17 86688972 to 9862411 -76826561 QTL leishmaniasis resistance 1
Gm22235 17 86703298 to 86703407 109 - snRNA gene predicted gene, 22235
Tssr149738 17 86710473 to 86710507 34 - TSS region transcription start site region 149738
Tssr149739 17 86710544 to 86710594 50 - TSS region transcription start site region 149739
Cpgi9609 17 86753009 to 86755601 2592 CpG island CpG island 9609
Tssr149740 17 86753418 to 86753451 33 - TSS region transcription start site region 149740
Tssr149741 17 86753466 to 86753480 14 - TSS region transcription start site region 149741
Tssr146117 17 86753667 to 86753672 5 + TSS region transcription start site region 146117
Tssr146118 17 86753688 to 86753709 21 + TSS region transcription start site region 146118
Tssr146119 17 86753809 to 86753820 11 + TSS region transcription start site region 146119
Tssr146120 17 86753836 to 86753847 11 + TSS region transcription start site region 146120
Epas1 17 86753864 to 86833410 79546 + protein coding gene endothelial PAS domain protein 1
Tssr146121 17 86753900 to 86753914 14 + TSS region transcription start site region 146121
Tssr146122 17 86754084 to 86754093 9 + TSS region transcription start site region 146122
Tssr146123 17 86754100 to 86754111 11 + TSS region transcription start site region 146123
Tssr146124 17 86754122 to 86754133 11 + TSS region transcription start site region 146124
Tssr146125 17 86754153 to 86754160 7 + TSS region transcription start site region 146125
Tssr146126 17 86754165 to 86754176 11 + TSS region transcription start site region 146126
Tssr146127 17 86754179 to 86754193 14 + TSS region transcription start site region 146127
Tssr146128 17 86760436 to 86760447 11 + TSS region transcription start site region 146128
Gm50008 17 86773270 to 86774648 1378 + unclassified gene predicted gene, 50008
Tssr146129 17 86778501 to 86778505 4 + TSS region transcription start site region 146129
Tssr146130 17 86778729 to 86778757 28 + TSS region transcription start site region 146130
Tssr146131 17 86778760 to 86778781 21 + TSS region transcription start site region 146131
Tssr149742 17 86798898 to 86798900 2 - TSS region transcription start site region 149742
Tssr149743 17 86802711 to 86802717 6 - TSS region transcription start site region 149743
Tssr146132 17 86809600 to 86809630 30 + TSS region transcription start site region 146132
Tssr146133 17 86809711 to 86809740 29 + TSS region transcription start site region 146133
Tssr149744 17 86810991 to 86810994 3 - TSS region transcription start site region 149744
Tssr149745 17 86811001 to 86811022 21 - TSS region transcription start site region 149745
Tssr146134 17 86821155 to 86821159 4 + TSS region transcription start site region 146134
Tssr146135 17 86823690 to 86823705 15 + TSS region transcription start site region 146135
Tssr146136 17 86823755 to 86823777 22 + TSS region transcription start site region 146136
Tssr146137 17 86824570 to 86824591 21 + TSS region transcription start site region 146137
Tssr146138 17 86825648 to 86825663 15 + TSS region transcription start site region 146138
Tssr149746 17 86827546 to 86827567 21 - TSS region transcription start site region 149746
Tssr146139 17 86829393 to 86829434 41 + TSS region transcription start site region 146139
Tssr146140 17 86830972 to 86830977 5 + TSS region transcription start site region 146140
Tssr146141 17 86831059 to 86831073 14 + TSS region transcription start site region 146141
Tssr146142 17 86831116 to 86831128 12 + TSS region transcription start site region 146142
Tssr146143 17 86831233 to 86831244 11 + TSS region transcription start site region 146143
Tssr146144 17 86831248 to 86831270 22 + TSS region transcription start site region 146144
Tssr149747 17 86831277 to 86831285 8 - TSS region transcription start site region 149747
Tssr146145 17 86831292 to 86831299 7 + TSS region transcription start site region 146145
Tssr146146 17 86831313 to 86831324 11 + TSS region transcription start site region 146146
Tssr146147 17 86831344 to 86831351 7 + TSS region transcription start site region 146147
Tssr149748 17 86831345 to 86831369 24 - TSS region transcription start site region 149748
Tssr146148 17 86831354 to 86831373 19 + TSS region transcription start site region 146148
Tssr146149 17 86831415 to 86831426 11 + TSS region transcription start site region 146149
Tssr146150 17 86831429 to 86831438 9 + TSS region transcription start site region 146150
Tssr146151 17 86831448 to 86831468 20 + TSS region transcription start site region 146151
Tssr146152 17 86831473 to 86831492 19 + TSS region transcription start site region 146152
Tssr146153 17 86831520 to 86831567 47 + TSS region transcription start site region 146153
Tssr146154 17 86831618 to 86831621 3 + TSS region transcription start site region 146154
Gm29168 17 86840030 to 86840716 686 + lincRNA gene predicted gene 29168
Tssr146155 17 86855690 to 86855695 5 + TSS region transcription start site region 146155
Tssr149749 17 86880440 to 86880446 6 - TSS region transcription start site region 149749
4933423N03Rik 17 86915620 to 86917259 1639 unclassified gene RIKEN cDNA 4933423N03 gene
Tmem247 17 86917348 to 86922367 5019 + protein coding gene transmembrane protein 247
Tssr146156 17 86917399 to 86917438 39 + TSS region transcription start site region 146156
Tssr146157 17 86917441 to 86917458 17 + TSS region transcription start site region 146157
Gm50011 17 86928973 to 86944709 15736 + lincRNA gene predicted gene, 50011
Cpgi9610 17 86937754 to 86937972 218 CpG island CpG island 9610
Atp6v1e2 17 86944109 to 86947887 3778 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit E2
Tssr149750 17 86947867 to 86947901 34 - TSS region transcription start site region 149750
Tssr149751 17 86958001 to 86958018 17 - TSS region transcription start site region 149751
Tssr146158 17 86961482 to 86961522 40 + TSS region transcription start site region 146158
Cpgi9611 17 86962248 to 86964029 1781 CpG island CpG island 9611
Tssr146159 17 86962668 to 86962687 19 + TSS region transcription start site region 146159
Tssr146160 17 86963077 to 86963094 17 + TSS region transcription start site region 146160
Rhoq 17 86963082 to 87000069 36987 + protein coding gene ras homolog family member Q
Tssr146161 17 86963246 to 86963268 22 + TSS region transcription start site region 146161
Tssr146162 17 86963279 to 86963303 24 + TSS region transcription start site region 146162
Tssr146163 17 86963318 to 86963329 11 + TSS region transcription start site region 146163
Tssr146164 17 86963330 to 86963346 16 + TSS region transcription start site region 146164
Tssr146165 17 86963399 to 86963410 11 + TSS region transcription start site region 146165
Tssr146166 17 86964315 to 86964323 8 + TSS region transcription start site region 146166
Gm50012 17 86970372 to 86975288 4916 + sense intronic lncRNA gene predicted gene, 50012
Tssr146167 17 86980933 to 86980939 6 + TSS region transcription start site region 146167
Tssr146168 17 86981083 to 86981097 14 + TSS region transcription start site region 146168
Tssr146169 17 86981115 to 86981126 11 + TSS region transcription start site region 146169
Tssr149752 17 86987153 to 86987158 5 - TSS region transcription start site region 149752
Tssr146170 17 86993746 to 86993768 22 + TSS region transcription start site region 146170
Pigf 17 86997256 to 87025406 28150 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class F
Tssr146171 17 86997842 to 86997856 14 + TSS region transcription start site region 146171
Tssr149753 17 87023408 to 87023411 3 - TSS region transcription start site region 149753
Cpgi9612 17 87024646 to 87025962 1316 CpG island CpG island 9612
Tssr149754 17 87025353 to 87025403 50 - TSS region transcription start site region 149754
Tssr149755 17 87025539 to 87025548 9 - TSS region transcription start site region 149755
Tssr146172 17 87025556 to 87025635 79 + TSS region transcription start site region 146172
Cript 17 87025561 to 87035808 10247 + protein coding gene cysteine-rich PDZ-binding protein
Gm30421 17 87039808 to 87050887 11079 - lncRNA gene predicted gene, 30421
Cpgi9613 17 87041736 to 87041987 251 CpG island CpG island 9613
Cpgi9614 17 87044497 to 87044681 184 CpG island CpG island 9614
Tssr149756 17 87050648 to 87050675 27 - TSS region transcription start site region 149756
Gm24648 17 87053694 to 87053825 131 - snoRNA gene predicted gene, 24648
Tssr146173 17 87078255 to 87078267 12 + TSS region transcription start site region 146173
Gm5499 17 87078271 to 87079155 884 + pseudogene predicted pseudogene 5499
Cpgi9615 17 87091492 to 87091782 290 CpG island CpG island 9615
Gm30510 17 87091755 to 87107347 15592 - lncRNA gene predicted gene, 30510
Tssr149757 17 87101055 to 87101059 4 - TSS region transcription start site region 149757
Cpgi9616 17 87106734 to 87108370 1636 CpG island CpG island 9616
Tssr5228 17 87107287 to 87107322 35 + TSS region transcription start site region 5228
Tssr146174 17 87107621 to 87107684 63 + TSS region transcription start site region 146174
Socs5 17 87107679 to 87137839 30160 + protein coding gene suppressor of cytokine signaling 5
Tssr146175 17 87107685 to 87107702 17 + TSS region transcription start site region 146175