Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:85609882-85992936

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Six3os1 17 85601932 to 85618396 16464 - lncRNA gene SIX homeobox 3, opposite strand 1
Gm27435 17 85611676 to 85611763 87 + unclassified non-coding RNA gene predicted gene, 27435
Tssr149705 17 85612331 to 85612377 46 - TSS region transcription start site region 149705
Cpgi9587 17 85612656 to 85613072 416 CpG island CpG island 9587
Tssr149706 17 85613054 to 85613064 10 - TSS region transcription start site region 149706
Tssr146084 17 85613226 to 85613238 12 + TSS region transcription start site region 146084
Gm27801 17 85613382 to 85613604 222 + unclassified non-coding RNA gene predicted gene, 27801
Tssr146085 17 85613432 to 85613485 53 + TSS region transcription start site region 146085
Cpgi9588 17 85613604 to 85614079 475 CpG island CpG island 9588
Six3 17 85613608 to 85626191 12583 + protein coding gene sine oculis-related homeobox 3
Gm27610 17 85614662 to 85614735 73 + unclassified non-coding RNA gene predicted gene, 27610
Cpgi9589 17 85614679 to 85615459 780 CpG island CpG island 9589
Tssr149707 17 85614802 to 85614812 10 - TSS region transcription start site region 149707
Gm27283 17 85614960 to 85615282 322 + unclassified non-coding RNA gene predicted gene, 27283
Tssr149708 17 85615000 to 85615010 10 - TSS region transcription start site region 149708
Tssr149709 17 85615047 to 85615058 11 - TSS region transcription start site region 149709
Tssr149710 17 85615136 to 85615152 16 - TSS region transcription start site region 149710
Tssr149711 17 85615164 to 85615176 12 - TSS region transcription start site region 149711
Tssr149712 17 85615454 to 85615462 8 - TSS region transcription start site region 149712
Cpgi9590 17 85616579 to 85616785 206 CpG island CpG island 9590
Gm27275 17 85616702 to 85616973 271 + unclassified non-coding RNA gene predicted gene, 27275
Cpgi9591 17 85617088 to 85617242 154 CpG island CpG island 9591
Cpgi9592 17 85617734 to 85618653 919 CpG island CpG island 9592
Gm27502 17 85618067 to 85618265 198 + unclassified non-coding RNA gene predicted gene, 27502
Tssr5219 17 85618353 to 85618354 1 - TSS region transcription start site region 5219
Tssr149713 17 85618363 to 85618370 7 - TSS region transcription start site region 149713
Tssr149714 17 85618378 to 85618402 24 - TSS region transcription start site region 149714
Tssr149715 17 85618413 to 85618420 7 - TSS region transcription start site region 149715
Tssr149716 17 85618495 to 85618504 9 - TSS region transcription start site region 149716
Tssr149717 17 85618548 to 85618553 5 - TSS region transcription start site region 149717
Tssr5220 17 85618563 to 85618568 5 - TSS region transcription start site region 5220
Tssr149718 17 85618572 to 85618581 9 - TSS region transcription start site region 149718
Tssr149719 17 85618582 to 85618593 11 - TSS region transcription start site region 149719
Gm27427 17 85619225 to 85619417 192 + unclassified non-coding RNA gene predicted gene, 27427
Gm28528 17 85619326 to 85621001 1675 - antisense lncRNA gene predicted gene 28528
Cpgi9593 17 85620753 to 85622331 1578 CpG island CpG island 9593
Tssr146086 17 85620775 to 85620788 13 + TSS region transcription start site region 146086
Tssr146087 17 85620797 to 85620809 12 + TSS region transcription start site region 146087
Tssr146088 17 85620816 to 85620843 27 + TSS region transcription start site region 146088
Tssr146089 17 85620846 to 85620855 9 + TSS region transcription start site region 146089
Tssr146090 17 85620953 to 85620978 25 + TSS region transcription start site region 146090
Tssr146091 17 85620996 to 85621012 16 + TSS region transcription start site region 146091
Tssr146092 17 85621017 to 85621026 9 + TSS region transcription start site region 146092
Tssr5221 17 85621031 to 85621041 10 + TSS region transcription start site region 5221
Tssr5222 17 85621071 to 85621089 18 - TSS region transcription start site region 5222
Tssr146093 17 85621128 to 85621164 36 + TSS region transcription start site region 146093
Tssr146094 17 85621170 to 85621249 79 + TSS region transcription start site region 146094
Tssr5223 17 85621284 to 85621294 10 + TSS region transcription start site region 5223
Tssr146095 17 85621304 to 85621325 21 + TSS region transcription start site region 146095
Cpgi9594 17 85623442 to 85624184 742 CpG island CpG island 9594
Tssr146096 17 85623919 to 85623963 44 + TSS region transcription start site region 146096
Tssr146097 17 85623969 to 85624035 66 + TSS region transcription start site region 146097
Tssr146098 17 85624209 to 85624222 13 + TSS region transcription start site region 146098
Tssr146099 17 85629109 to 85629133 24 + TSS region transcription start site region 146099
Cpgi9595 17 85630508 to 85630681 173 CpG island CpG island 9595
Nilac12 17 85633891 to 85634014 123 QTL nicotine induced locomotor activity 12
D17Mit76 17 85633891 to 85634014 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 76
D17Dcr25 17 85633895 to 85634024 129 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 25
Cpgi9596 17 85645751 to 85646037 286 CpG island CpG island 9596
D17Mit211 17 85656857 to 85656966 109 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 211
Cpgi9597 17 85680827 to 85681012 185 CpG island CpG island 9597
Cpgi9598 17 85683693 to 85683870 177 CpG island CpG island 9598
Six2 17 85684277 to 85688274 3997 - protein coding gene sine oculis-related homeobox 2
Cpgi9599 17 85684984 to 85685613 629 CpG island CpG island 9599
Cpgi9600 17 85687018 to 85689476 2458 CpG island CpG island 9600
Tssr149720 17 85688241 to 85688248 7 - TSS region transcription start site region 149720
Tssr149721 17 85688252 to 85688275 23 - TSS region transcription start site region 149721
Tssr149722 17 85688963 to 85688967 4 - TSS region transcription start site region 149722
Tssr146100 17 85691141 to 85691162 21 + TSS region transcription start site region 146100
Tssr146101 17 85691171 to 85691195 24 + TSS region transcription start site region 146101
Tssr146102 17 85691240 to 85691258 18 + TSS region transcription start site region 146102
Cpgi9601 17 85691901 to 85693173 1272 CpG island CpG island 9601
CJ186046Rik 17 85693629 to 85713028 19399 + lncRNA gene Riken cDNA CJ186046 gene
3110013M02Rik 17 85726683 to 85727017 334 unclassified gene RIKEN cDNA 3110013M02 gene
D17Mit190 17 85729026 to 85729132 106 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 190
Gm41644 17 85756129 to 85767246 11117 + lncRNA gene predicted gene, 41644
Gm41645 17 85769472 to 85780502 11030 - lncRNA gene predicted gene, 41645
Gm29418 17 85796168 to 85799994 3826 - lincRNA gene predicted gene 29418
Cpgi9602 17 85799680 to 85801090 1410 CpG island CpG island 9602
Gm4718 17 85799882 to 85802936 3054 protein coding gene predicted gene 4718
Tssr149723 17 85800416 to 85800427 11 - TSS region transcription start site region 149723
Gm30117 17 85862235 to 85928579 66344 - lncRNA gene predicted gene, 30117
Tssr149724 17 85928563 to 85928582 19 - TSS region transcription start site region 149724
Srbd1 17 85984665 to 86145175 160510 - protein coding gene S1 RNA binding domain 1