Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:85609662-85619735

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Six3os1 17 85601932 to 85618396 16464 - lncRNA gene SIX homeobox 3, opposite strand 1
Gm27435 17 85611676 to 85611763 87 + unclassified non-coding RNA gene predicted gene, 27435
Tssr149705 17 85612331 to 85612377 46 - TSS region transcription start site region 149705
Cpgi9587 17 85612656 to 85613072 416 CpG island CpG island 9587
Tssr149706 17 85613054 to 85613064 10 - TSS region transcription start site region 149706
Tssr146084 17 85613226 to 85613238 12 + TSS region transcription start site region 146084
Gm27801 17 85613382 to 85613604 222 + unclassified non-coding RNA gene predicted gene, 27801
Tssr146085 17 85613432 to 85613485 53 + TSS region transcription start site region 146085
Cpgi9588 17 85613604 to 85614079 475 CpG island CpG island 9588
Six3 17 85613608 to 85626191 12583 + protein coding gene sine oculis-related homeobox 3
Gm27610 17 85614662 to 85614735 73 + unclassified non-coding RNA gene predicted gene, 27610
Cpgi9589 17 85614679 to 85615459 780 CpG island CpG island 9589
Tssr149707 17 85614802 to 85614812 10 - TSS region transcription start site region 149707
Gm27283 17 85614960 to 85615282 322 + unclassified non-coding RNA gene predicted gene, 27283
Tssr149708 17 85615000 to 85615010 10 - TSS region transcription start site region 149708
Tssr149709 17 85615047 to 85615058 11 - TSS region transcription start site region 149709
Tssr149710 17 85615136 to 85615152 16 - TSS region transcription start site region 149710
Tssr149711 17 85615164 to 85615176 12 - TSS region transcription start site region 149711
Tssr149712 17 85615454 to 85615462 8 - TSS region transcription start site region 149712
Cpgi9590 17 85616579 to 85616785 206 CpG island CpG island 9590
Gm27275 17 85616702 to 85616973 271 + unclassified non-coding RNA gene predicted gene, 27275
Cpgi9591 17 85617088 to 85617242 154 CpG island CpG island 9591
Cpgi9592 17 85617734 to 85618653 919 CpG island CpG island 9592
Gm27502 17 85618067 to 85618265 198 + unclassified non-coding RNA gene predicted gene, 27502
Tssr5219 17 85618353 to 85618354 1 - TSS region transcription start site region 5219
Tssr149713 17 85618363 to 85618370 7 - TSS region transcription start site region 149713
Tssr149714 17 85618378 to 85618402 24 - TSS region transcription start site region 149714
Tssr149715 17 85618413 to 85618420 7 - TSS region transcription start site region 149715
Tssr149716 17 85618495 to 85618504 9 - TSS region transcription start site region 149716
Tssr149717 17 85618548 to 85618553 5 - TSS region transcription start site region 149717
Tssr5220 17 85618563 to 85618568 5 - TSS region transcription start site region 5220
Tssr149718 17 85618572 to 85618581 9 - TSS region transcription start site region 149718
Tssr149719 17 85618582 to 85618593 11 - TSS region transcription start site region 149719
Gm27427 17 85619225 to 85619417 192 + unclassified non-coding RNA gene predicted gene, 27427
Gm28528 17 85619326 to 85621001 1675 - antisense lncRNA gene predicted gene 28528