Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:85315489-85615522

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Camkmt 17 85090591 to 85458589 367998 + protein coding gene calmodulin-lysine N-methyltransferase
Cpgi9580 17 85390114 to 85390385 271 CpG island CpG island 9580
Tssr146081 17 85393816 to 85393818 2 + TSS region transcription start site region 146081
Tssr146082 17 85395795 to 85395818 23 + TSS region transcription start site region 146082
Cpgi9581 17 85454688 to 85454872 184 CpG island CpG island 9581
Cpgi9582 17 85458181 to 85458340 159 CpG island CpG island 9582
Cpgi9583 17 85464824 to 85465194 370 CpG island CpG island 9583
Tssr146083 17 85465489 to 85465522 33 + TSS region transcription start site region 146083
Cpgi9584 17 85485270 to 85485433 163 CpG island CpG island 9584
Cpgi9585 17 85486560 to 85486963 403 CpG island CpG island 9585
Rpl31-ps16 17 85498633 to 85499008 375 + pseudogene ribosomal protein L31, pseudogene 16
Gm5231 17 85541628 to 85542705 1077 - pseudogene predicted gene 5231
D17Mit56 17 85552362 to 85552571 209 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 56
Gm27178 17 85599533 to 85599872 339 + pseudogene predicted gene 27178
Six3os1 17 85601932 to 85618396 16464 - lncRNA gene SIX homeobox 3, opposite strand 1
Cpgi9586 17 85607986 to 85609276 1290 CpG island CpG island 9586
Gm27435 17 85611676 to 85611763 87 + unclassified non-coding RNA gene predicted gene, 27435
Tssr149705 17 85612331 to 85612377 46 - TSS region transcription start site region 149705
Cpgi9587 17 85612656 to 85613072 416 CpG island CpG island 9587
Tssr149706 17 85613054 to 85613064 10 - TSS region transcription start site region 149706
Tssr146084 17 85613226 to 85613238 12 + TSS region transcription start site region 146084
Gm27801 17 85613382 to 85613604 222 + unclassified non-coding RNA gene predicted gene, 27801
Tssr146085 17 85613432 to 85613485 53 + TSS region transcription start site region 146085
Cpgi9588 17 85613604 to 85614079 475 CpG island CpG island 9588
Six3 17 85613608 to 85626191 12583 + protein coding gene sine oculis-related homeobox 3
Gm27610 17 85614662 to 85614735 73 + unclassified non-coding RNA gene predicted gene, 27610
Cpgi9589 17 85614679 to 85615459 780 CpG island CpG island 9589
Tssr149707 17 85614802 to 85614812 10 - TSS region transcription start site region 149707
Gm27283 17 85614960 to 85615282 322 + unclassified non-coding RNA gene predicted gene, 27283
Tssr149708 17 85615000 to 85615010 10 - TSS region transcription start site region 149708
Tssr149709 17 85615047 to 85615058 11 - TSS region transcription start site region 149709
Tssr149710 17 85615136 to 85615152 16 - TSS region transcription start site region 149710
Tssr149711 17 85615164 to 85615176 12 - TSS region transcription start site region 149711
Tssr149712 17 85615454 to 85615462 8 - TSS region transcription start site region 149712