Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:84550062-85031150

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plekhh2 17 84511895 to 84622138 110243 + protein coding gene pleckstrin homology domain containing, family H (with MyTH4 domain) member 2
4930500A05Rik 17 84545947 to 84566824 20877 - lncRNA gene RIKEN cDNA 4930500A05 gene
Gm49969 17 84575877 to 84626395 50518 - antisense lncRNA gene predicted gene, 49969
Tssr146053 17 84576289 to 84576293 4 + TSS region transcription start site region 146053
Tssr146054 17 84613163 to 84613175 12 + TSS region transcription start site region 146054
Tssr146055 17 84613231 to 84613252 21 + TSS region transcription start site region 146055
Gm26066 17 84624402 to 84624510 108 + snRNA gene predicted gene, 26066
Cpgi9570 17 84626357 to 84626761 404 CpG island CpG island 9570
Tssr146056 17 84626458 to 84626512 54 + TSS region transcription start site region 146056
Dync2li1 17 84626496 to 84655568 29072 + protein coding gene dynein cytoplasmic 2 light intermediate chain 1
Tssr146057 17 84626516 to 84626529 13 + TSS region transcription start site region 146057
Abcg5 17 84658234 to 84683011 24777 - protein coding gene ATP binding cassette subfamily G member 5
Lith9 17 84658234 to 84683011 24777 QTL lithogenic gene 9
Cpgi9571 17 84675914 to 84676415 501 CpG island CpG island 9571
Abcg8 17 84676302 to 84700333 24031 + protein coding gene ATP binding cassette subfamily G member 8
Tssr149689 17 84676962 to 84676965 3 - TSS region transcription start site region 149689
Tssr149690 17 84682871 to 84682882 11 - TSS region transcription start site region 149690
Tssr149691 17 84682885 to 84682914 29 - TSS region transcription start site region 149691
Tssr149692 17 84682932 to 84682944 12 - TSS region transcription start site region 149692
Tssr146058 17 84683023 to 84683024 1 + TSS region transcription start site region 146058
Tssr146059 17 84683084 to 84683089 5 + TSS region transcription start site region 146059
Tssr146060 17 84683090 to 84683104 14 + TSS region transcription start site region 146060
Tssr146061 17 84683113 to 84683128 15 + TSS region transcription start site region 146061
Tssr146062 17 84683133 to 84683141 8 + TSS region transcription start site region 146062
Tssr146063 17 84683150 to 84683157 7 + TSS region transcription start site region 146063
Tssr146064 17 84683159 to 84683185 26 + TSS region transcription start site region 146064
Tssr146065 17 84683190 to 84683193 3 + TSS region transcription start site region 146065
Tssr146066 17 84683201 to 84683208 7 + TSS region transcription start site region 146066
Cpgi9572 17 84692370 to 84692683 313 CpG island CpG island 9572
Lrpprc 17 84705247 to 84790786 85539 - protein coding gene leucine-rich PPR-motif containing
Tssr149693 17 84716688 to 84716717 29 - TSS region transcription start site region 149693
Tssr146067 17 84738789 to 84738792 3 + TSS region transcription start site region 146067
Gm49979 17 84784792 to 84788622 3830 + unclassified gene predicted gene, 49979
Cpgi9573 17 84790062 to 84791150 1088 CpG island CpG island 9573
Tssr149694 17 84790517 to 84790585 68 - TSS region transcription start site region 149694
Tssr149695 17 84790811 to 84790829 18 - TSS region transcription start site region 149695
Tssr5217 17 84793824 to 84793827 3 + TSS region transcription start site region 5217
Gm46582 17 84816338 to 84819469 3131 + lncRNA gene predicted gene, 46582
Gm49981 17 84823256 to 84840296 17040 - lincRNA gene predicted gene, 49981
Gm9400 17 84852538 to 84853451 913 + pseudogene predicted gene 9400
Cpgi9574 17 84852572 to 84852945 373 CpG island CpG island 9574
Tssr149696 17 84855353 to 84855359 6 - TSS region transcription start site region 149696
Tssr149697 17 84860016 to 84860030 14 - TSS region transcription start site region 149697
Tssr149698 17 84879169 to 84879193 24 - TSS region transcription start site region 149698
Tssr146068 17 84893796 to 84893832 36 + TSS region transcription start site region 146068
Gm49982 17 84902160 to 84902569 409 - pseudogene predicted gene, 49982
1110020A21Rik 17 84917182 to 84957710 40528 - lincRNA gene RIKEN cDNA 1110020A21 gene
Tssr146069 17 84956718 to 84956745 27 + TSS region transcription start site region 146069
Ppm1b 17 84956741 to 85023991 67250 + protein coding gene protein phosphatase 1B, magnesium dependent, beta isoform
Tssr5218 17 84956940 to 84956945 5 - TSS region transcription start site region 5218
Cpgi9575 17 84957093 to 84957337 244 CpG island CpG island 9575
Tssr146070 17 84957126 to 84957138 12 + TSS region transcription start site region 146070
Cpgi9576 17 84957650 to 84958881 1231 CpG island CpG island 9576
Tssr146071 17 84957993 to 84958018 25 + TSS region transcription start site region 146071
Tssr149699 17 84958487 to 84958498 11 - TSS region transcription start site region 149699
Tssr149700 17 84958506 to 84958527 21 - TSS region transcription start site region 149700
Tssr149701 17 84958536 to 84958553 17 - TSS region transcription start site region 149701
Tssr146072 17 84962986 to 84962990 4 + TSS region transcription start site region 146072
Tssr146073 17 84965031 to 84965050 19 + TSS region transcription start site region 146073
Tssr146074 17 85018917 to 85018919 2 + TSS region transcription start site region 146074
Tssr146075 17 85027964 to 85027968 4 + TSS region transcription start site region 146075
Tssr146076 17 85028347 to 85028404 57 + TSS region transcription start site region 146076
Slc3a1 17 85028376 to 85064236 35860 + protein coding gene solute carrier family 3, member 1
Cpgi9577 17 85028668 to 85028884 216 CpG island CpG island 9577