Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:84335816-86905843

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300 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Thada 17 84190076 to 84466205 276129 - protein coding gene thyroid adenoma associated
Tssr149681 17 84355006 to 84355020 14 - TSS region transcription start site region 149681
Tssr149682 17 84380463 to 84380477 14 - TSS region transcription start site region 149682
Gm24722 17 84391429 to 84391535 106 + snRNA gene predicted gene, 24722
Tssr149683 17 84419468 to 84419482 14 - TSS region transcription start site region 149683
Cpgi9567 17 84465621 to 84466631 1010 CpG island CpG island 9567
Tssr149684 17 84466173 to 84466184 11 - TSS region transcription start site region 149684
Tssr149685 17 84466186 to 84466245 59 - TSS region transcription start site region 149685
Tssr146049 17 84466349 to 84466364 15 + TSS region transcription start site region 146049
Gm41642 17 84477267 to 84504655 27388 - lncRNA gene predicted gene, 41642
D17Dcr24 17 84501615 to 84501719 104 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 24
D17Mit155 17 84501619 to 84501758 139 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 155
Tssr146050 17 84511550 to 84511561 11 + TSS region transcription start site region 146050
Cpgi9568 17 84511593 to 84512688 1095 CpG island CpG island 9568
Tssr146051 17 84511832 to 84511913 81 + TSS region transcription start site region 146051
Plekhh2 17 84511895 to 84622138 110243 + protein coding gene pleckstrin homology domain containing, family H (with MyTH4 domain) member 2
Tssr149686 17 84512121 to 84512140 19 - TSS region transcription start site region 149686
Tssr146052 17 84512228 to 84512240 12 + TSS region transcription start site region 146052
Tssr149687 17 84543247 to 84543261 14 - TSS region transcription start site region 149687
Tssr149688 17 84543262 to 84543272 10 - TSS region transcription start site region 149688
4930500A05Rik 17 84545947 to 84566824 20877 - lncRNA gene RIKEN cDNA 4930500A05 gene
Cpgi9569 17 84546523 to 84546701 178 CpG island CpG island 9569
Gm49969 17 84575877 to 84626395 50518 - antisense lncRNA gene predicted gene, 49969
Tssr146053 17 84576289 to 84576293 4 + TSS region transcription start site region 146053
Tssr146054 17 84613163 to 84613175 12 + TSS region transcription start site region 146054
Tssr146055 17 84613231 to 84613252 21 + TSS region transcription start site region 146055
Gm26066 17 84624402 to 84624510 108 + snRNA gene predicted gene, 26066
Cpgi9570 17 84626357 to 84626761 404 CpG island CpG island 9570
Tssr146056 17 84626458 to 84626512 54 + TSS region transcription start site region 146056
Dync2li1 17 84626496 to 84655568 29072 + protein coding gene dynein cytoplasmic 2 light intermediate chain 1
Tssr146057 17 84626516 to 84626529 13 + TSS region transcription start site region 146057
Lith9 17 84658234 to 84683011 24777 QTL lithogenic gene 9
Abcg5 17 84658234 to 84683011 24777 - protein coding gene ATP binding cassette subfamily G member 5
Cpgi9571 17 84675914 to 84676415 501 CpG island CpG island 9571
Abcg8 17 84676302 to 84700333 24031 + protein coding gene ATP binding cassette subfamily G member 8
Tssr149689 17 84676962 to 84676965 3 - TSS region transcription start site region 149689
Tssr149690 17 84682871 to 84682882 11 - TSS region transcription start site region 149690
Tssr149691 17 84682885 to 84682914 29 - TSS region transcription start site region 149691
Tssr149692 17 84682932 to 84682944 12 - TSS region transcription start site region 149692
Tssr146058 17 84683023 to 84683024 1 + TSS region transcription start site region 146058
Tssr146059 17 84683084 to 84683089 5 + TSS region transcription start site region 146059
Tssr146060 17 84683090 to 84683104 14 + TSS region transcription start site region 146060
Tssr146061 17 84683113 to 84683128 15 + TSS region transcription start site region 146061
Tssr146062 17 84683133 to 84683141 8 + TSS region transcription start site region 146062
Tssr146063 17 84683150 to 84683157 7 + TSS region transcription start site region 146063
Tssr146064 17 84683159 to 84683185 26 + TSS region transcription start site region 146064
Tssr146065 17 84683190 to 84683193 3 + TSS region transcription start site region 146065
Tssr146066 17 84683201 to 84683208 7 + TSS region transcription start site region 146066
Cpgi9572 17 84692370 to 84692683 313 CpG island CpG island 9572
Lrpprc 17 84705247 to 84790786 85539 - protein coding gene leucine-rich PPR-motif containing
Tssr149693 17 84716688 to 84716717 29 - TSS region transcription start site region 149693
Tssr146067 17 84738789 to 84738792 3 + TSS region transcription start site region 146067
Gm49979 17 84784792 to 84788622 3830 + unclassified gene predicted gene, 49979
Cpgi9573 17 84790062 to 84791150 1088 CpG island CpG island 9573
Tssr149694 17 84790517 to 84790585 68 - TSS region transcription start site region 149694
Tssr149695 17 84790811 to 84790829 18 - TSS region transcription start site region 149695
Tssr5217 17 84793824 to 84793827 3 + TSS region transcription start site region 5217
Gm46582 17 84816338 to 84819469 3131 + lncRNA gene predicted gene, 46582
Gm49981 17 84823256 to 84840296 17040 - lincRNA gene predicted gene, 49981
Gm9400 17 84852538 to 84853451 913 + pseudogene predicted gene 9400
Cpgi9574 17 84852572 to 84852945 373 CpG island CpG island 9574
Tssr149696 17 84855353 to 84855359 6 - TSS region transcription start site region 149696
Tssr149697 17 84860016 to 84860030 14 - TSS region transcription start site region 149697
Tssr149698 17 84879169 to 84879193 24 - TSS region transcription start site region 149698
Tssr146068 17 84893796 to 84893832 36 + TSS region transcription start site region 146068
Gm49982 17 84902160 to 84902569 409 - pseudogene predicted gene, 49982
1110020A21Rik 17 84917182 to 84957710 40528 - lincRNA gene RIKEN cDNA 1110020A21 gene
Tssr146069 17 84956718 to 84956745 27 + TSS region transcription start site region 146069
Ppm1b 17 84956741 to 85023991 67250 + protein coding gene protein phosphatase 1B, magnesium dependent, beta isoform
Tssr5218 17 84956940 to 84956945 5 - TSS region transcription start site region 5218
Cpgi9575 17 84957093 to 84957337 244 CpG island CpG island 9575
Tssr146070 17 84957126 to 84957138 12 + TSS region transcription start site region 146070
Cpgi9576 17 84957650 to 84958881 1231 CpG island CpG island 9576
Tssr146071 17 84957993 to 84958018 25 + TSS region transcription start site region 146071
Tssr149699 17 84958487 to 84958498 11 - TSS region transcription start site region 149699
Tssr149700 17 84958506 to 84958527 21 - TSS region transcription start site region 149700
Tssr149701 17 84958536 to 84958553 17 - TSS region transcription start site region 149701
Tssr146072 17 84962986 to 84962990 4 + TSS region transcription start site region 146072
Tssr146073 17 84965031 to 84965050 19 + TSS region transcription start site region 146073
Tssr146074 17 85018917 to 85018919 2 + TSS region transcription start site region 146074
Tssr146075 17 85027964 to 85027968 4 + TSS region transcription start site region 146075
Tssr146076 17 85028347 to 85028404 57 + TSS region transcription start site region 146076
Slc3a1 17 85028376 to 85064236 35860 + protein coding gene solute carrier family 3, member 1
Cpgi9577 17 85028668 to 85028884 216 CpG island CpG island 9577
Tssr146077 17 85033616 to 85033635 19 + TSS region transcription start site region 146077
Prepl 17 85063470 to 85090241 26771 - protein coding gene prolyl endopeptidase-like
Tssr149702 17 85088543 to 85088577 34 - TSS region transcription start site region 149702
Cpgi9578 17 85089882 to 85091128 1246 CpG island CpG island 9578
Tssr149703 17 85090204 to 85090275 71 - TSS region transcription start site region 149703
Camkmt 17 85090591 to 85458589 367998 + protein coding gene calmodulin-lysine N-methyltransferase
Tssr146078 17 85090620 to 85090645 25 + TSS region transcription start site region 146078
Tssr146079 17 85090647 to 85090721 74 + TSS region transcription start site region 146079
D17Mit210 17 85121685 to 85121831 146 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 210
Gm36826 17 85158056 to 85163671 5615 + lncRNA gene predicted gene, 36826
Tssr149704 17 85162680 to 85162687 7 - TSS region transcription start site region 149704
Cpgi9579 17 85182021 to 85182205 184 CpG island CpG island 9579
D17Mit189 17 85188166 to 85188282 116 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 189
Tssr146080 17 85190063 to 85190068 5 + TSS region transcription start site region 146080
Cpgi9580 17 85390114 to 85390385 271 CpG island CpG island 9580
Tssr146081 17 85393816 to 85393818 2 + TSS region transcription start site region 146081
Tssr146082 17 85395795 to 85395818 23 + TSS region transcription start site region 146082
Cpgi9581 17 85454688 to 85454872 184 CpG island CpG island 9581
Cpgi9582 17 85458181 to 85458340 159 CpG island CpG island 9582
Cpgi9583 17 85464824 to 85465194 370 CpG island CpG island 9583
Tssr146083 17 85465489 to 85465522 33 + TSS region transcription start site region 146083
Cpgi9584 17 85485270 to 85485433 163 CpG island CpG island 9584
Cpgi9585 17 85486560 to 85486963 403 CpG island CpG island 9585
Rpl31-ps16 17 85498633 to 85499008 375 + pseudogene ribosomal protein L31, pseudogene 16
Gm5231 17 85541628 to 85542705 1077 - pseudogene predicted gene 5231
D17Mit56 17 85552362 to 85552571 209 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 56
Gm27178 17 85599533 to 85599872 339 + pseudogene predicted gene 27178
Six3os1 17 85601932 to 85618396 16464 - lncRNA gene SIX homeobox 3, opposite strand 1
Cpgi9586 17 85607986 to 85609276 1290 CpG island CpG island 9586
Gm27435 17 85611676 to 85611763 87 + unclassified non-coding RNA gene predicted gene, 27435
Tssr149705 17 85612331 to 85612377 46 - TSS region transcription start site region 149705
Cpgi9587 17 85612656 to 85613072 416 CpG island CpG island 9587
Tssr149706 17 85613054 to 85613064 10 - TSS region transcription start site region 149706
Tssr146084 17 85613226 to 85613238 12 + TSS region transcription start site region 146084
Gm27801 17 85613382 to 85613604 222 + unclassified non-coding RNA gene predicted gene, 27801
Tssr146085 17 85613432 to 85613485 53 + TSS region transcription start site region 146085
Cpgi9588 17 85613604 to 85614079 475 CpG island CpG island 9588
Six3 17 85613608 to 85626191 12583 + protein coding gene sine oculis-related homeobox 3
Gm27610 17 85614662 to 85614735 73 + unclassified non-coding RNA gene predicted gene, 27610
Cpgi9589 17 85614679 to 85615459 780 CpG island CpG island 9589
Tssr149707 17 85614802 to 85614812 10 - TSS region transcription start site region 149707
Gm27283 17 85614960 to 85615282 322 + unclassified non-coding RNA gene predicted gene, 27283
Tssr149708 17 85615000 to 85615010 10 - TSS region transcription start site region 149708
Tssr149709 17 85615047 to 85615058 11 - TSS region transcription start site region 149709
Tssr149710 17 85615136 to 85615152 16 - TSS region transcription start site region 149710
Tssr149711 17 85615164 to 85615176 12 - TSS region transcription start site region 149711
Tssr149712 17 85615454 to 85615462 8 - TSS region transcription start site region 149712
Cpgi9590 17 85616579 to 85616785 206 CpG island CpG island 9590
Gm27275 17 85616702 to 85616973 271 + unclassified non-coding RNA gene predicted gene, 27275
Cpgi9591 17 85617088 to 85617242 154 CpG island CpG island 9591
Cpgi9592 17 85617734 to 85618653 919 CpG island CpG island 9592
Gm27502 17 85618067 to 85618265 198 + unclassified non-coding RNA gene predicted gene, 27502
Tssr5219 17 85618353 to 85618354 1 - TSS region transcription start site region 5219
Tssr149713 17 85618363 to 85618370 7 - TSS region transcription start site region 149713
Tssr149714 17 85618378 to 85618402 24 - TSS region transcription start site region 149714
Tssr149715 17 85618413 to 85618420 7 - TSS region transcription start site region 149715
Tssr149716 17 85618495 to 85618504 9 - TSS region transcription start site region 149716
Tssr149717 17 85618548 to 85618553 5 - TSS region transcription start site region 149717
Tssr5220 17 85618563 to 85618568 5 - TSS region transcription start site region 5220
Tssr149718 17 85618572 to 85618581 9 - TSS region transcription start site region 149718
Tssr149719 17 85618582 to 85618593 11 - TSS region transcription start site region 149719
Gm27427 17 85619225 to 85619417 192 + unclassified non-coding RNA gene predicted gene, 27427
Gm28528 17 85619326 to 85621001 1675 - antisense lncRNA gene predicted gene 28528
Cpgi9593 17 85620753 to 85622331 1578 CpG island CpG island 9593
Tssr146086 17 85620775 to 85620788 13 + TSS region transcription start site region 146086
Tssr146087 17 85620797 to 85620809 12 + TSS region transcription start site region 146087
Tssr146088 17 85620816 to 85620843 27 + TSS region transcription start site region 146088
Tssr146089 17 85620846 to 85620855 9 + TSS region transcription start site region 146089
Tssr146090 17 85620953 to 85620978 25 + TSS region transcription start site region 146090
Tssr146091 17 85620996 to 85621012 16 + TSS region transcription start site region 146091
Tssr146092 17 85621017 to 85621026 9 + TSS region transcription start site region 146092
Tssr5221 17 85621031 to 85621041 10 + TSS region transcription start site region 5221
Tssr5222 17 85621071 to 85621089 18 - TSS region transcription start site region 5222
Tssr146093 17 85621128 to 85621164 36 + TSS region transcription start site region 146093
Tssr146094 17 85621170 to 85621249 79 + TSS region transcription start site region 146094
Tssr5223 17 85621284 to 85621294 10 + TSS region transcription start site region 5223
Tssr146095 17 85621304 to 85621325 21 + TSS region transcription start site region 146095
Cpgi9594 17 85623442 to 85624184 742 CpG island CpG island 9594
Tssr146096 17 85623919 to 85623963 44 + TSS region transcription start site region 146096
Tssr146097 17 85623969 to 85624035 66 + TSS region transcription start site region 146097
Tssr146098 17 85624209 to 85624222 13 + TSS region transcription start site region 146098
Tssr146099 17 85629109 to 85629133 24 + TSS region transcription start site region 146099
Cpgi9595 17 85630508 to 85630681 173 CpG island CpG island 9595
Nilac12 17 85633891 to 85634014 123 QTL nicotine induced locomotor activity 12
D17Mit76 17 85633891 to 85634014 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 76
D17Dcr25 17 85633895 to 85634024 129 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 25
Cpgi9596 17 85645751 to 85646037 286 CpG island CpG island 9596
D17Mit211 17 85656857 to 85656966 109 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 211
Cpgi9597 17 85680827 to 85681012 185 CpG island CpG island 9597
Cpgi9598 17 85683693 to 85683870 177 CpG island CpG island 9598
Six2 17 85684277 to 85688274 3997 - protein coding gene sine oculis-related homeobox 2
Cpgi9599 17 85684984 to 85685613 629 CpG island CpG island 9599
Cpgi9600 17 85687018 to 85689476 2458 CpG island CpG island 9600
Tssr149720 17 85688241 to 85688248 7 - TSS region transcription start site region 149720
Tssr149721 17 85688252 to 85688275 23 - TSS region transcription start site region 149721
Tssr149722 17 85688963 to 85688967 4 - TSS region transcription start site region 149722
Tssr146100 17 85691141 to 85691162 21 + TSS region transcription start site region 146100
Tssr146101 17 85691171 to 85691195 24 + TSS region transcription start site region 146101
Tssr146102 17 85691240 to 85691258 18 + TSS region transcription start site region 146102
Cpgi9601 17 85691901 to 85693173 1272 CpG island CpG island 9601
CJ186046Rik 17 85693629 to 85713028 19399 + lncRNA gene Riken cDNA CJ186046 gene
3110013M02Rik 17 85726683 to 85727017 334 unclassified gene RIKEN cDNA 3110013M02 gene
D17Mit190 17 85729026 to 85729132 106 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 190
Gm41644 17 85756129 to 85767246 11117 + lncRNA gene predicted gene, 41644
Gm41645 17 85769472 to 85780502 11030 - lncRNA gene predicted gene, 41645
Gm29418 17 85796168 to 85799994 3826 - lincRNA gene predicted gene 29418
Cpgi9602 17 85799680 to 85801090 1410 CpG island CpG island 9602
Gm4718 17 85799882 to 85802936 3054 protein coding gene predicted gene 4718
Tssr149723 17 85800416 to 85800427 11 - TSS region transcription start site region 149723
Gm30117 17 85862235 to 85928579 66344 - lncRNA gene predicted gene, 30117
Tssr149724 17 85928563 to 85928582 19 - TSS region transcription start site region 149724
Srbd1 17 85984665 to 86145175 160510 - protein coding gene S1 RNA binding domain 1
D17Mit212 17 86009698 to 86009800 102 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 212
D17Mit212.2 17 86009801 to 86009949 148 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 212.2
Tssr149725 17 86075330 to 86075335 5 - TSS region transcription start site region 149725
Cpgi9603 17 86144505 to 86145515 1010 CpG island CpG island 9603