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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:84306688-85126717

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Thada 17 84190076 to 84466205 276129 - protein coding gene thyroid adenoma associated
Tssr149677 17 84313619 to 84313631 12 - TSS region transcription start site region 149677
Tssr149678 17 84313644 to 84313645 1 - TSS region transcription start site region 149678
Tssr149679 17 84313662 to 84313669 7 - TSS region transcription start site region 149679
Tssr149680 17 84313676 to 84313696 20 - TSS region transcription start site region 149680
Tssr146048 17 84313843 to 84313846 3 + TSS region transcription start site region 146048
D17Mit41 17 84335603 to 84335805 202 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 41
Tssr149681 17 84355006 to 84355020 14 - TSS region transcription start site region 149681
Tssr149682 17 84380463 to 84380477 14 - TSS region transcription start site region 149682
Gm24722 17 84391429 to 84391535 106 + snRNA gene predicted gene, 24722
Tssr149683 17 84419468 to 84419482 14 - TSS region transcription start site region 149683
Cpgi9567 17 84465621 to 84466631 1010 CpG island CpG island 9567
Tssr149684 17 84466173 to 84466184 11 - TSS region transcription start site region 149684
Tssr149685 17 84466186 to 84466245 59 - TSS region transcription start site region 149685
Tssr146049 17 84466349 to 84466364 15 + TSS region transcription start site region 146049
Gm41642 17 84477267 to 84504655 27388 - lncRNA gene predicted gene, 41642
D17Dcr24 17 84501615 to 84501719 104 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 24
D17Mit155 17 84501619 to 84501758 139 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 155
Tssr146050 17 84511550 to 84511561 11 + TSS region transcription start site region 146050
Cpgi9568 17 84511593 to 84512688 1095 CpG island CpG island 9568
Tssr146051 17 84511832 to 84511913 81 + TSS region transcription start site region 146051
Plekhh2 17 84511895 to 84622138 110243 + protein coding gene pleckstrin homology domain containing, family H (with MyTH4 domain) member 2
Tssr149686 17 84512121 to 84512140 19 - TSS region transcription start site region 149686
Tssr146052 17 84512228 to 84512240 12 + TSS region transcription start site region 146052
Tssr149687 17 84543247 to 84543261 14 - TSS region transcription start site region 149687
Tssr149688 17 84543262 to 84543272 10 - TSS region transcription start site region 149688
4930500A05Rik 17 84545947 to 84566824 20877 - lncRNA gene RIKEN cDNA 4930500A05 gene
Cpgi9569 17 84546523 to 84546701 178 CpG island CpG island 9569
Gm49969 17 84575877 to 84626395 50518 - antisense lncRNA gene predicted gene, 49969
Tssr146053 17 84576289 to 84576293 4 + TSS region transcription start site region 146053
Tssr146054 17 84613163 to 84613175 12 + TSS region transcription start site region 146054
Tssr146055 17 84613231 to 84613252 21 + TSS region transcription start site region 146055
Gm26066 17 84624402 to 84624510 108 + snRNA gene predicted gene, 26066
Cpgi9570 17 84626357 to 84626761 404 CpG island CpG island 9570
Tssr146056 17 84626458 to 84626512 54 + TSS region transcription start site region 146056
Dync2li1 17 84626496 to 84655568 29072 + protein coding gene dynein cytoplasmic 2 light intermediate chain 1
Tssr146057 17 84626516 to 84626529 13 + TSS region transcription start site region 146057
Lith9 17 84658234 to 84683011 24777 QTL lithogenic gene 9
Abcg5 17 84658234 to 84683011 24777 - protein coding gene ATP binding cassette subfamily G member 5
Cpgi9571 17 84675914 to 84676415 501 CpG island CpG island 9571
Abcg8 17 84676302 to 84700333 24031 + protein coding gene ATP binding cassette subfamily G member 8
Tssr149689 17 84676962 to 84676965 3 - TSS region transcription start site region 149689
Tssr149690 17 84682871 to 84682882 11 - TSS region transcription start site region 149690
Tssr149691 17 84682885 to 84682914 29 - TSS region transcription start site region 149691
Tssr149692 17 84682932 to 84682944 12 - TSS region transcription start site region 149692
Tssr146058 17 84683023 to 84683024 1 + TSS region transcription start site region 146058
Tssr146059 17 84683084 to 84683089 5 + TSS region transcription start site region 146059
Tssr146060 17 84683090 to 84683104 14 + TSS region transcription start site region 146060
Tssr146061 17 84683113 to 84683128 15 + TSS region transcription start site region 146061
Tssr146062 17 84683133 to 84683141 8 + TSS region transcription start site region 146062
Tssr146063 17 84683150 to 84683157 7 + TSS region transcription start site region 146063
Tssr146064 17 84683159 to 84683185 26 + TSS region transcription start site region 146064
Tssr146065 17 84683190 to 84683193 3 + TSS region transcription start site region 146065
Tssr146066 17 84683201 to 84683208 7 + TSS region transcription start site region 146066
Cpgi9572 17 84692370 to 84692683 313 CpG island CpG island 9572
Lrpprc 17 84705247 to 84790786 85539 - protein coding gene leucine-rich PPR-motif containing
Tssr149693 17 84716688 to 84716717 29 - TSS region transcription start site region 149693
Tssr146067 17 84738789 to 84738792 3 + TSS region transcription start site region 146067
Gm49979 17 84784792 to 84788622 3830 + unclassified gene predicted gene, 49979
Cpgi9573 17 84790062 to 84791150 1088 CpG island CpG island 9573
Tssr149694 17 84790517 to 84790585 68 - TSS region transcription start site region 149694
Tssr149695 17 84790811 to 84790829 18 - TSS region transcription start site region 149695
Tssr5217 17 84793824 to 84793827 3 + TSS region transcription start site region 5217
Gm46582 17 84816338 to 84819469 3131 + lncRNA gene predicted gene, 46582
Gm49981 17 84823256 to 84840296 17040 - lincRNA gene predicted gene, 49981
Gm9400 17 84852538 to 84853451 913 + pseudogene predicted gene 9400
Cpgi9574 17 84852572 to 84852945 373 CpG island CpG island 9574
Tssr149696 17 84855353 to 84855359 6 - TSS region transcription start site region 149696
Tssr149697 17 84860016 to 84860030 14 - TSS region transcription start site region 149697
Tssr149698 17 84879169 to 84879193 24 - TSS region transcription start site region 149698
Tssr146068 17 84893796 to 84893832 36 + TSS region transcription start site region 146068
Gm49982 17 84902160 to 84902569 409 - pseudogene predicted gene, 49982
1110020A21Rik 17 84917182 to 84957710 40528 - lincRNA gene RIKEN cDNA 1110020A21 gene
Tssr146069 17 84956718 to 84956745 27 + TSS region transcription start site region 146069
Ppm1b 17 84956741 to 85023991 67250 + protein coding gene protein phosphatase 1B, magnesium dependent, beta isoform
Tssr5218 17 84956940 to 84956945 5 - TSS region transcription start site region 5218
Cpgi9575 17 84957093 to 84957337 244 CpG island CpG island 9575
Tssr146070 17 84957126 to 84957138 12 + TSS region transcription start site region 146070
Cpgi9576 17 84957650 to 84958881 1231 CpG island CpG island 9576
Tssr146071 17 84957993 to 84958018 25 + TSS region transcription start site region 146071
Tssr149699 17 84958487 to 84958498 11 - TSS region transcription start site region 149699
Tssr149700 17 84958506 to 84958527 21 - TSS region transcription start site region 149700
Tssr149701 17 84958536 to 84958553 17 - TSS region transcription start site region 149701
Tssr146072 17 84962986 to 84962990 4 + TSS region transcription start site region 146072
Tssr146073 17 84965031 to 84965050 19 + TSS region transcription start site region 146073
Tssr146074 17 85018917 to 85018919 2 + TSS region transcription start site region 146074
Tssr146075 17 85027964 to 85027968 4 + TSS region transcription start site region 146075
Tssr146076 17 85028347 to 85028404 57 + TSS region transcription start site region 146076
Slc3a1 17 85028376 to 85064236 35860 + protein coding gene solute carrier family 3, member 1
Cpgi9577 17 85028668 to 85028884 216 CpG island CpG island 9577
Tssr146077 17 85033616 to 85033635 19 + TSS region transcription start site region 146077
Prepl 17 85063470 to 85090241 26771 - protein coding gene prolyl endopeptidase-like
Tssr149702 17 85088543 to 85088577 34 - TSS region transcription start site region 149702
Cpgi9578 17 85089882 to 85091128 1246 CpG island CpG island 9578
Tssr149703 17 85090204 to 85090275 71 - TSS region transcription start site region 149703
Camkmt 17 85090591 to 85458589 367998 + protein coding gene calmodulin-lysine N-methyltransferase
Tssr146078 17 85090620 to 85090645 25 + TSS region transcription start site region 146078
Tssr146079 17 85090647 to 85090721 74 + TSS region transcription start site region 146079
D17Mit210 17 85121685 to 85121831 146 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 210