Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:83851304-87391325

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513 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
C430042M11Rik 17 83851675 to 83854418 2743 - lincRNA gene RIKEN cDNA C430042M11 gene
Tssr146014 17 83856936 to 83856949 13 + TSS region transcription start site region 146014
Cpgi9561 17 83861388 to 83862384 996 CpG island CpG island 9561
n-TIaat17 17 83861944 to 83862036 92 + tRNA gene nuclear encoded tRNA isoleucine 17 (anticodon TAT)
Gm35125 17 83864414 to 83874722 10308 - lncRNA gene predicted gene, 35125
Tssr149618 17 83874683 to 83874707 24 - TSS region transcription start site region 149618
Tssr146015 17 83905648 to 83905656 8 + TSS region transcription start site region 146015
D17Mit75 17 83911825 to 83911973 148 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 75
Tssr146016 17 83917931 to 83917949 18 + TSS region transcription start site region 146016
1810073O08Rik 17 83917937 to 83921606 3669 + lncRNA gene RIKEN cDNA 1810073O08 gene
Gm23905 17 83947588 to 83947696 108 + rRNA gene predicted gene, 23905
Gm41639 17 83950991 to 83952463 1472 - lncRNA gene predicted gene, 41639
Gm35229 17 83956248 to 83957523 1275 + lncRNA gene predicted gene, 35229
Gm41638 17 83959868 to 83960930 1062 - lncRNA gene predicted gene, 41638
Gm35457 17 83963975 to 83970464 6489 + lncRNA gene predicted gene, 35457
Tssr146017 17 83976141 to 83976150 9 + TSS region transcription start site region 146017
Tssr146018 17 83980541 to 83980572 31 + TSS region transcription start site region 146018
Tssr146019 17 83980573 to 83980623 50 + TSS region transcription start site region 146019
Tssr146020 17 83985667 to 83985670 3 + TSS region transcription start site region 146020
Tssr146021 17 83986393 to 83986400 7 + TSS region transcription start site region 146021
Tssr149619 17 83990472 to 83990480 8 - TSS region transcription start site region 149619
Tssr146022 17 83998539 to 83998554 15 + TSS region transcription start site region 146022
8430430B14Rik 17 83998554 to 84013408 14854 + lncRNA gene RIKEN cDNA 8430430B14 gene
Tssr146023 17 84002297 to 84002305 8 + TSS region transcription start site region 146023
Tssr149620 17 84004028 to 84004041 13 - TSS region transcription start site region 149620
Tssr149621 17 84004347 to 84004359 12 - TSS region transcription start site region 149621
Tssr149622 17 84006864 to 84006873 9 - TSS region transcription start site region 149622
Gm37549 17 84012992 to 84017056 4064 - unclassified gene predicted gene, 37549
Gm35551 17 84020663 to 84026019 5356 - lncRNA gene predicted gene, 35551
Tssr149623 17 84025966 to 84026004 38 - TSS region transcription start site region 149623
Cpgi9562 17 84028382 to 84029027 645 CpG island CpG island 9562
Gm49967 17 84036890 to 84038262 1372 + lincRNA gene predicted gene, 49967
Tssr149624 17 84050023 to 84050042 19 - TSS region transcription start site region 149624
Cpgi9563 17 84067095 to 84067442 347 CpG island CpG island 9563
Tssr149625 17 84073752 to 84073765 13 - TSS region transcription start site region 149625
4933433H22Rik 17 84078660 to 84089875 11215 + lncRNA gene RIKEN cDNA 4933433H22 gene
Tssr149626 17 84083582 to 84083614 32 - TSS region transcription start site region 149626
Tssr149627 17 84083645 to 84083658 13 - TSS region transcription start site region 149627
Tssr146024 17 84086611 to 84086621 10 + TSS region transcription start site region 146024
Cpgi9564 17 84096321 to 84097213 892 CpG island CpG island 9564
Tssr146025 17 84100802 to 84100818 16 + TSS region transcription start site region 146025
Tssr146026 17 84100836 to 84100863 27 + TSS region transcription start site region 146026
Tssr149628 17 84103504 to 84103526 22 - TSS region transcription start site region 149628
Tssr146027 17 84103634 to 84103648 14 + TSS region transcription start site region 146027
Tssr149629 17 84106403 to 84106426 23 - TSS region transcription start site region 149629
Tssr146028 17 84108182 to 84108223 41 + TSS region transcription start site region 146028
Tssr149630 17 84115367 to 84115374 7 - TSS region transcription start site region 149630
Tssr146029 17 84116863 to 84116879 16 + TSS region transcription start site region 146029
Tssr5213 17 84117057 to 84117075 18 + TSS region transcription start site region 5213
Tssr5214 17 84117838 to 84117852 14 - TSS region transcription start site region 5214
Tssr149631 17 84119207 to 84119218 11 - TSS region transcription start site region 149631
Tssr146030 17 84119435 to 84119450 15 + TSS region transcription start site region 146030
Tssr146031 17 84119869 to 84119882 13 + TSS region transcription start site region 146031
Tssr146032 17 84119911 to 84119920 9 + TSS region transcription start site region 146032
Tssr149632 17 84121558 to 84121570 12 - TSS region transcription start site region 149632
Tssr149633 17 84121584 to 84121608 24 - TSS region transcription start site region 149633
Tssr146033 17 84125108 to 84125116 8 + TSS region transcription start site region 146033
Tssr149634 17 84125999 to 84126040 41 - TSS region transcription start site region 149634
Tssr149635 17 84126248 to 84126281 33 - TSS region transcription start site region 149635
Tssr149636 17 84126298 to 84126316 18 - TSS region transcription start site region 149636
Tssr146034 17 84126391 to 84126418 27 + TSS region transcription start site region 146034
Tssr149637 17 84127107 to 84127123 16 - TSS region transcription start site region 149637
Tssr149638 17 84128382 to 84128396 14 - TSS region transcription start site region 149638
Gm19696 17 84134033 to 84156440 22407 - lncRNA gene predicted gene, 19696
Tssr149639 17 84135389 to 84135402 13 - TSS region transcription start site region 149639
Tssr149640 17 84137197 to 84137207 10 - TSS region transcription start site region 149640
Tssr149641 17 84137230 to 84137243 13 - TSS region transcription start site region 149641
Tssr5215 17 84137884 to 84137887 3 - TSS region transcription start site region 5215
Tssr149642 17 84140956 to 84140985 29 - TSS region transcription start site region 149642
Tssr146035 17 84142891 to 84142898 7 + TSS region transcription start site region 146035
Tssr149643 17 84145883 to 84145894 11 - TSS region transcription start site region 149643
Tssr149644 17 84145916 to 84145938 22 - TSS region transcription start site region 149644
Tssr146036 17 84146100 to 84146116 16 + TSS region transcription start site region 146036
Tssr149645 17 84156398 to 84156410 12 - TSS region transcription start site region 149645
Tssr149646 17 84156421 to 84156433 12 - TSS region transcription start site region 149646
Gm41640 17 84159945 to 84182931 22986 - lncRNA gene predicted gene, 41640
Tssr149647 17 84161228 to 84161245 17 - TSS region transcription start site region 149647
Tssr149648 17 84180733 to 84180750 17 - TSS region transcription start site region 149648
Tssr146037 17 84180949 to 84180985 36 + TSS region transcription start site region 146037
Tssr146038 17 84181218 to 84181239 21 + TSS region transcription start site region 146038
Tssr146039 17 84181616 to 84181654 38 + TSS region transcription start site region 146039
Tssr146040 17 84181926 to 84181963 37 + TSS region transcription start site region 146040
Tssr146041 17 84181974 to 84182001 27 + TSS region transcription start site region 146041
Tssr146042 17 84182003 to 84182014 11 + TSS region transcription start site region 146042
Tssr149649 17 84183561 to 84183592 31 - TSS region transcription start site region 149649
Tssr146043 17 84183763 to 84183772 9 + TSS region transcription start site region 146043
Zfp36l2 17 84183931 to 84187947 4016 - protein coding gene zinc finger protein 36, C3H type-like 2
Tssr149650 17 84185564 to 84185587 23 - TSS region transcription start site region 149650
Cpgi9565 17 84185598 to 84187252 1654 CpG island CpG island 9565
Tssr149651 17 84185602 to 84185641 39 - TSS region transcription start site region 149651
Tssr146044 17 84185746 to 84185761 15 + TSS region transcription start site region 146044
Tssr149652 17 84185987 to 84186021 34 - TSS region transcription start site region 149652
Tssr149653 17 84186035 to 84186073 38 - TSS region transcription start site region 149653
Tssr149654 17 84186175 to 84186197 22 - TSS region transcription start site region 149654
Tssr149655 17 84186271 to 84186341 70 - TSS region transcription start site region 149655
Tssr149656 17 84186361 to 84186382 21 - TSS region transcription start site region 149656
Tssr149657 17 84186577 to 84186612 35 - TSS region transcription start site region 149657
Tssr149658 17 84186634 to 84186655 21 - TSS region transcription start site region 149658
Tssr149659 17 84186669 to 84186691 22 - TSS region transcription start site region 149659
Tssr149660 17 84186700 to 84186717 17 - TSS region transcription start site region 149660
Tssr149661 17 84186749 to 84186780 31 - TSS region transcription start site region 149661
Tssr149662 17 84186808 to 84186820 12 - TSS region transcription start site region 149662
Tssr149663 17 84186872 to 84186889 17 - TSS region transcription start site region 149663
Tssr149664 17 84186913 to 84186932 19 - TSS region transcription start site region 149664
Tssr149665 17 84186958 to 84187004 46 - TSS region transcription start site region 149665
Tssr149666 17 84187027 to 84187066 39 - TSS region transcription start site region 149666
Tssr146045 17 84187090 to 84187117 27 + TSS region transcription start site region 146045
Tssr149667 17 84187116 to 84187166 50 - TSS region transcription start site region 149667
Tssr149668 17 84187171 to 84187190 19 - TSS region transcription start site region 149668
Tssr149669 17 84187204 to 84187252 48 - TSS region transcription start site region 149669
Cpgi9566 17 84187611 to 84189022 1411 CpG island CpG island 9566
Tssr149670 17 84187737 to 84187757 20 - TSS region transcription start site region 149670
Tssr149671 17 84187827 to 84187899 72 - TSS region transcription start site region 149671
Tssr149672 17 84187939 to 84187954 15 - TSS region transcription start site region 149672
Tssr146046 17 84188604 to 84188626 22 + TSS region transcription start site region 146046
Gm36279 17 84189288 to 84219293 30005 + lncRNA gene predicted gene, 36279
Thada 17 84190076 to 84466205 276129 - protein coding gene thyroid adenoma associated
Tssr146047 17 84226578 to 84226579 1 + TSS region transcription start site region 146047
Tssr5216 17 84235860 to 84235877 17 + TSS region transcription start site region 5216
Tssr149673 17 84273040 to 84273073 33 - TSS region transcription start site region 149673
Tssr149674 17 84273095 to 84273102 7 - TSS region transcription start site region 149674
Tssr149675 17 84273108 to 84273140 32 - TSS region transcription start site region 149675
Gm24492 17 84287641 to 84287747 106 - snRNA gene predicted gene, 24492
Tssr149676 17 84306324 to 84306335 11 - TSS region transcription start site region 149676
Tssr149677 17 84313619 to 84313631 12 - TSS region transcription start site region 149677
Tssr149678 17 84313644 to 84313645 1 - TSS region transcription start site region 149678
Tssr149679 17 84313662 to 84313669 7 - TSS region transcription start site region 149679
Tssr149680 17 84313676 to 84313696 20 - TSS region transcription start site region 149680
Tssr146048 17 84313843 to 84313846 3 + TSS region transcription start site region 146048
D17Mit41 17 84335603 to 84335805 202 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 41
Tssr149681 17 84355006 to 84355020 14 - TSS region transcription start site region 149681
Tssr149682 17 84380463 to 84380477 14 - TSS region transcription start site region 149682
Gm24722 17 84391429 to 84391535 106 + snRNA gene predicted gene, 24722
Tssr149683 17 84419468 to 84419482 14 - TSS region transcription start site region 149683
Cpgi9567 17 84465621 to 84466631 1010 CpG island CpG island 9567
Tssr149684 17 84466173 to 84466184 11 - TSS region transcription start site region 149684
Tssr149685 17 84466186 to 84466245 59 - TSS region transcription start site region 149685
Tssr146049 17 84466349 to 84466364 15 + TSS region transcription start site region 146049
Gm41642 17 84477267 to 84504655 27388 - lncRNA gene predicted gene, 41642
D17Dcr24 17 84501615 to 84501719 104 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 24
D17Mit155 17 84501619 to 84501758 139 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 155
Tssr146050 17 84511550 to 84511561 11 + TSS region transcription start site region 146050
Cpgi9568 17 84511593 to 84512688 1095 CpG island CpG island 9568
Tssr146051 17 84511832 to 84511913 81 + TSS region transcription start site region 146051
Plekhh2 17 84511895 to 84622138 110243 + protein coding gene pleckstrin homology domain containing, family H (with MyTH4 domain) member 2
Tssr149686 17 84512121 to 84512140 19 - TSS region transcription start site region 149686
Tssr146052 17 84512228 to 84512240 12 + TSS region transcription start site region 146052
Tssr149687 17 84543247 to 84543261 14 - TSS region transcription start site region 149687
Tssr149688 17 84543262 to 84543272 10 - TSS region transcription start site region 149688
4930500A05Rik 17 84545947 to 84566824 20877 - lncRNA gene RIKEN cDNA 4930500A05 gene
Cpgi9569 17 84546523 to 84546701 178 CpG island CpG island 9569
Gm49969 17 84575877 to 84626395 50518 - antisense lncRNA gene predicted gene, 49969
Tssr146053 17 84576289 to 84576293 4 + TSS region transcription start site region 146053
Tssr146054 17 84613163 to 84613175 12 + TSS region transcription start site region 146054
Tssr146055 17 84613231 to 84613252 21 + TSS region transcription start site region 146055
Gm26066 17 84624402 to 84624510 108 + snRNA gene predicted gene, 26066
Cpgi9570 17 84626357 to 84626761 404 CpG island CpG island 9570
Tssr146056 17 84626458 to 84626512 54 + TSS region transcription start site region 146056
Dync2li1 17 84626496 to 84655568 29072 + protein coding gene dynein cytoplasmic 2 light intermediate chain 1
Tssr146057 17 84626516 to 84626529 13 + TSS region transcription start site region 146057
Abcg5 17 84658234 to 84683011 24777 - protein coding gene ATP binding cassette subfamily G member 5
Lith9 17 84658234 to 84683011 24777 QTL lithogenic gene 9
Cpgi9571 17 84675914 to 84676415 501 CpG island CpG island 9571
Abcg8 17 84676302 to 84700333 24031 + protein coding gene ATP binding cassette subfamily G member 8
Tssr149689 17 84676962 to 84676965 3 - TSS region transcription start site region 149689
Tssr149690 17 84682871 to 84682882 11 - TSS region transcription start site region 149690
Tssr149691 17 84682885 to 84682914 29 - TSS region transcription start site region 149691
Tssr149692 17 84682932 to 84682944 12 - TSS region transcription start site region 149692
Tssr146058 17 84683023 to 84683024 1 + TSS region transcription start site region 146058
Tssr146059 17 84683084 to 84683089 5 + TSS region transcription start site region 146059
Tssr146060 17 84683090 to 84683104 14 + TSS region transcription start site region 146060
Tssr146061 17 84683113 to 84683128 15 + TSS region transcription start site region 146061
Tssr146062 17 84683133 to 84683141 8 + TSS region transcription start site region 146062
Tssr146063 17 84683150 to 84683157 7 + TSS region transcription start site region 146063
Tssr146064 17 84683159 to 84683185 26 + TSS region transcription start site region 146064
Tssr146065 17 84683190 to 84683193 3 + TSS region transcription start site region 146065
Tssr146066 17 84683201 to 84683208 7 + TSS region transcription start site region 146066
Cpgi9572 17 84692370 to 84692683 313 CpG island CpG island 9572
Lrpprc 17 84705247 to 84790786 85539 - protein coding gene leucine-rich PPR-motif containing
Tssr149693 17 84716688 to 84716717 29 - TSS region transcription start site region 149693
Tssr146067 17 84738789 to 84738792 3 + TSS region transcription start site region 146067
Gm49979 17 84784792 to 84788622 3830 + unclassified gene predicted gene, 49979
Cpgi9573 17 84790062 to 84791150 1088 CpG island CpG island 9573
Tssr149694 17 84790517 to 84790585 68 - TSS region transcription start site region 149694
Tssr149695 17 84790811 to 84790829 18 - TSS region transcription start site region 149695
Tssr5217 17 84793824 to 84793827 3 + TSS region transcription start site region 5217
Gm46582 17 84816338 to 84819469 3131 + lncRNA gene predicted gene, 46582
Gm49981 17 84823256 to 84840296 17040 - lincRNA gene predicted gene, 49981
Gm9400 17 84852538 to 84853451 913 + pseudogene predicted gene 9400
Cpgi9574 17 84852572 to 84852945 373 CpG island CpG island 9574
Tssr149696 17 84855353 to 84855359 6 - TSS region transcription start site region 149696
Tssr149697 17 84860016 to 84860030 14 - TSS region transcription start site region 149697
Tssr149698 17 84879169 to 84879193 24 - TSS region transcription start site region 149698
Tssr146068 17 84893796 to 84893832 36 + TSS region transcription start site region 146068
Gm49982 17 84902160 to 84902569 409 - pseudogene predicted gene, 49982
1110020A21Rik 17 84917182 to 84957710 40528 - lincRNA gene RIKEN cDNA 1110020A21 gene
Tssr146069 17 84956718 to 84956745 27 + TSS region transcription start site region 146069
Ppm1b 17 84956741 to 85023991 67250 + protein coding gene protein phosphatase 1B, magnesium dependent, beta isoform
Tssr5218 17 84956940 to 84956945 5 - TSS region transcription start site region 5218
Cpgi9575 17 84957093 to 84957337 244 CpG island CpG island 9575