Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:8356414-12636428

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306 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49987 17 8311109 to 8396852 85743 + unclassified gene predicted gene, 49987
Gm46593 17 8362107 to 8362445 338 - pseudogene predicted gene, 46593
T2 17 8372010 to 8422728 50718 + protein coding gene brachyury 2
Tssr5001 17 8372074 to 8372097 23 + TSS region transcription start site region 5001
Gm16702 17 8379045 to 8389468 10423 - lincRNA gene predicted gene, 16702
Gm5491 17 8384053 to 8384660 607 - pseudogene predicted gene 5491
Cpgi8589 17 8389026 to 8389433 407 CpG island CpG island 8589
Cpgi8590 17 8396784 to 8396985 201 CpG island CpG island 8590
Gm34036 17 8411619 to 8415211 3592 - lncRNA gene predicted gene, 34036
Cpgi8591 17 8429656 to 8429834 178 CpG island CpG island 8591
Cpgi8592 17 8433279 to 8435355 2076 CpG island CpG island 8592
Tssr142539 17 8434265 to 8434283 18 + TSS region transcription start site region 142539
T 17 8434423 to 8442496 8073 + protein coding gene brachyury, T-box transcription factor T
Obq19 17 8443121 to 8443244 123 QTL obesity QTL 19
D17Mit143 17 8443121 to 8443244 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 143
D17Mit143.2 17 8443228 to 8443342 114 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 143.2
D17Mit246 17 8459684 to 8459785 101 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 246
Tssr142540 17 8500464 to 8500480 16 + TSS region transcription start site region 142540
Cpgi8593 17 8506018 to 8506303 285 CpG island CpG island 8593
Tssr5002 17 8506335 to 8506353 18 + TSS region transcription start site region 5002
Cpgi8594 17 8513475 to 8513712 237 CpG island CpG island 8594
Cpgi8595 17 8524574 to 8526182 1608 CpG island CpG island 8595
Tssr146360 17 8524852 to 8524878 26 - TSS region transcription start site region 146360
Tssr142541 17 8525174 to 8525190 16 + TSS region transcription start site region 142541
Tssr142542 17 8525197 to 8525239 42 + TSS region transcription start site region 142542
Tssr142543 17 8525245 to 8525254 9 + TSS region transcription start site region 142543
Tssr142544 17 8525369 to 8525396 27 + TSS region transcription start site region 142544
Pde10a 17 8525372 to 8986648 461276 + protein coding gene phosphodiesterase 10A
Tssr142545 17 8525434 to 8525444 10 + TSS region transcription start site region 142545
Tssr142546 17 8526996 to 8527025 29 + TSS region transcription start site region 142546
Gm15425 17 8564227 to 8565197 970 - pseudogene predicted gene 15425
Tssr142547 17 8565487 to 8565494 7 + TSS region transcription start site region 142547
Tssr146361 17 8565534 to 8565567 33 - TSS region transcription start site region 146361
Tssr146362 17 8565692 to 8565705 13 - TSS region transcription start site region 146362
Gm17087 17 8565852 to 8566950 1098 - pseudogene predicted gene 17087
Tssr146363 17 8566581 to 8566621 40 - TSS region transcription start site region 146363
Tssr142548 17 8582392 to 8582411 19 + TSS region transcription start site region 142548
Tssr142549 17 8582638 to 8582649 11 + TSS region transcription start site region 142549
Cpgi8596 17 8592933 to 8593151 218 CpG island CpG island 8596
D17Mit25a 17 8606541 to 8606651 110 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 25a
D17Mit25b 17 8606541 to 8606693 152 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 25b
5330430B06Rik 17 8611367 to 8612875 1508 unclassified gene RIKEN cDNA 5330430B06 gene
Tssr142550 17 8663834 to 8663848 14 + TSS region transcription start site region 142550
D17Mit170 17 8699518 to 8699802 284 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology-170
Gm46585 17 8703925 to 8711406 7481 - lncRNA gene predicted gene, 46585
Tssr146364 17 8734741 to 8734742 1 - TSS region transcription start site region 146364
D17Mit48 17 8754187 to 8754352 165 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 48
Gm15426 17 8765372 to 8765927 555 - pseudogene predicted gene 15426
Tssr142551 17 8770783 to 8770789 6 + TSS region transcription start site region 142551
Tssr142552 17 8782263 to 8782265 2 + TSS region transcription start site region 142552
Cpgi8597 17 8800544 to 8802593 2049 CpG island CpG island 8597
Tssr142553 17 8800661 to 8800682 21 + TSS region transcription start site region 142553
Tssr142554 17 8801460 to 8801497 37 + TSS region transcription start site region 142554
Tssr142555 17 8801640 to 8801682 42 + TSS region transcription start site region 142555
Tssr142556 17 8801706 to 8801721 15 + TSS region transcription start site region 142556
Tssr142557 17 8801742 to 8801751 9 + TSS region transcription start site region 142557
Tssr142558 17 8801768 to 8801788 20 + TSS region transcription start site region 142558
Cpgi8598 17 8803045 to 8803387 342 CpG island CpG island 8598
Gm34321 17 8821039 to 8826050 5011 + lncRNA gene predicted gene, 34321
Tssr142559 17 8849923 to 8849933 10 + TSS region transcription start site region 142559
Tssr142560 17 8849974 to 8850001 27 + TSS region transcription start site region 142560
Cpgi8599 17 8856418 to 8856795 377 CpG island CpG island 8599
Cpgi8600 17 8867591 to 8868059 468 CpG island CpG island 8600
Tssr146365 17 8923950 to 8923997 47 - TSS region transcription start site region 146365
Tssr142561 17 8924109 to 8924128 19 + TSS region transcription start site region 142561
C030004M13Rik 17 8937279 to 8938340 1061 unclassified gene RIKEN cDNA C030004M13 gene
Pifs2 17 8970523 to 8970523 0 QTL peptide-induced fatal syndrome 2
D17Mit247 17 8975505 to 8975624 119 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 247
Lith3 17 8975505 to 8975624 119 QTL lithogenic gene 3
D17Pri2 17 8975535 to 8975699 164 DNA segment DNA segment, Chr 17, Princeton University 2
1700010I14Rik 17 8988320 to 9008319 19999 + protein coding gene RIKEN cDNA 1700010I14 gene
Tssr142562 17 8988340 to 8988347 7 + TSS region transcription start site region 142562
Tssr142563 17 8988348 to 8988395 47 + TSS region transcription start site region 142563
Tssr142564 17 8992239 to 8992274 35 + TSS region transcription start site region 142564
D17Pri3 17 8992737 to 8992820 83 DNA segment DNA segment, Chr 17, Princeton University 3
D17Mit225 17 9010494 to 9010616 122 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 225
Tssr142565 17 9030614 to 9030619 5 + TSS region transcription start site region 142565
Cpgi8601 17 9031560 to 9031775 215 CpG island CpG island 8601
Gm29711 17 9102678 to 9103132 454 + lncRNA gene predicted gene, 29711
6530411M01Rik 17 9147719 to 9167836 20117 - lincRNA gene RIKEN cDNA 6530411M01 gene
Cpgi8602 17 9167292 to 9167713 421 CpG island CpG island 8602
Cpgi8603 17 9168304 to 9168479 175 CpG island CpG island 8603
C87487 17 9189126 to 9223664 34538 + lincRNA gene expressed sequence C87487
Gm49806 17 9246550 to 9248548 1998 + unclassified gene predicted gene, 49806
Gm8492 17 9320395 to 9321381 986 - pseudogene predicted gene 8492
Gm7947 17 9321902 to 9323795 1893 - pseudogene predicted gene 7947
D17Jcs100 17 9399259 to 9399462 203 DNA segment DNA segment, Chr 17, John C. Schimenti 100
Gm17748 17 9421943 to 9422464 521 - pseudogene predicted gene, 17748
Gm17728 17 9422060 to 9422458 398 + protein coding gene predicted gene, 17728
Gm49807 17 9549691 to 9594242 44551 + lincRNA gene predicted gene, 49807
Pabpc6 17 9666497 to 9669704 3207 - protein coding gene poly(A) binding protein, cytoplasmic 6
Cpgi8604 17 9669242 to 9669741 499 CpG island CpG island 8604
Tssr146366 17 9669649 to 9669663 14 - TSS region transcription start site region 146366
Tssr146367 17 9669668 to 9669705 37 - TSS region transcription start site region 146367
Tssr146368 17 9669712 to 9669721 9 - TSS region transcription start site region 146368
Tssr5003 17 9669725 to 9669729 4 - TSS region transcription start site region 5003
D17Mit97 17 9688678 to 9688822 144 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 97
Gm34684 17 9705342 to 9726361 21019 - lincRNA gene predicted gene, 34684
D17Jcs102 17 9724382 to 9724581 199 DNA segment DNA segment, Chr 17, John C. Schimenti 102
4930452A19Rik 17 9750752 to 9775866 25114 - lncRNA gene RIKEN cDNA 4930452A19 gene
Tssr146369 17 9775855 to 9775858 3 - TSS region transcription start site region 146369
Tssr146370 17 9775862 to 9775872 10 - TSS region transcription start site region 146370
Gm34883 17 9847465 to 9849188 1723 - unclassified non-coding RNA gene predicted gene, 34883
D17Mit57 17 9862411 to 9862710 299 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 57
Cfld3 17 9862411 to 9862710 299 QTL cystic fibrosis lung disease 3
Pcyts4 17 9862411 to 9862710 299 QTL plasmacytoma susceptibility 4
Gm49808 17 9864419 to 9882149 17730 + lincRNA gene predicted gene, 49808
Tssr142566 17 9864601 to 9864628 27 + TSS region transcription start site region 142566
Gm34799 17 9926593 to 9929767 3174 - lincRNA gene predicted gene, 34799
Gm49809 17 9947837 to 9948297 460 + pseudogene predicted gene, 49809
D17Mit273 17 9949677 to 9949823 146 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-273
Tssr142567 17 10001604 to 10001609 5 + TSS region transcription start site region 142567
Tssr142568 17 10079248 to 10079258 10 + TSS region transcription start site region 142568
Tssr146371 17 10079828 to 10079838 10 - TSS region transcription start site region 146371
Gm34972 17 10141940 to 10146252 4312 - lncRNA gene predicted gene, 34972
D17Jcs112 17 10151818 to 10152034 216 DNA segment DNA segment, Chr 17, John C. Schimenti 112
D17Jcs111 17 10193913 to 10194148 235 DNA segment DNA segment, Chr 17, John C. Schimenti 111
Qk 17 10206471 to 10319361 112890 - protein coding gene quaking
Tssr146372 17 10209422 to 10209433 11 - TSS region transcription start site region 146372
Tssr146373 17 10211719 to 10211739 20 - TSS region transcription start site region 146373
Tssr146374 17 10212020 to 10212055 35 - TSS region transcription start site region 146374
Tssr146375 17 10212059 to 10212083 24 - TSS region transcription start site region 146375
Tssr146376 17 10212158 to 10212170 12 - TSS region transcription start site region 146376
Tssr146377 17 10212421 to 10212447 26 - TSS region transcription start site region 146377
Tssr146378 17 10213158 to 10213176 18 - TSS region transcription start site region 146378
Tssr146379 17 10215212 to 10215245 33 - TSS region transcription start site region 146379
Tssr146380 17 10216238 to 10216263 25 - TSS region transcription start site region 146380
Tssr146381 17 10216271 to 10216307 36 - TSS region transcription start site region 146381
Tssr146382 17 10216385 to 10216412 27 - TSS region transcription start site region 146382
Tssr146383 17 10216775 to 10216779 4 - TSS region transcription start site region 146383
Tssr146384 17 10231118 to 10231122 4 - TSS region transcription start site region 146384
D17Jcs113 17 10240945 to 10241245 300 DNA segment DNA segment, Chr 17, John C. Schimenti 113
Tssr146385 17 10244919 to 10244920 1 - TSS region transcription start site region 146385
Tssr146386 17 10265493 to 10265502 9 - TSS region transcription start site region 146386
Tssr146387 17 10274021 to 10274053 32 - TSS region transcription start site region 146387
D17Jcs114 17 10275603 to 10275866 263 DNA segment DNA segment, Chr 17, John C. Schimenti 114
Tssr146388 17 10280610 to 10280614 4 - TSS region transcription start site region 146388
Tssr146389 17 10282887 to 10282903 16 - TSS region transcription start site region 146389
Tssr146390 17 10286690 to 10286697 7 - TSS region transcription start site region 146390
Tssr146391 17 10294528 to 10294531 3 - TSS region transcription start site region 146391
D17Mit58 17 10296552 to 10296770 218 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 58
Tssr142569 17 10304474 to 10304476 2 + TSS region transcription start site region 142569
Dep1 17 10313184 to 10317847 4663 unclassified non-coding RNA gene diabetic embryopathy 1
Cpgi8605 17 10317969 to 10320466 2497 CpG island CpG island 8605
Tssr142570 17 10318320 to 10318337 17 + TSS region transcription start site region 142570
Tssr146392 17 10319235 to 10319251 16 - TSS region transcription start site region 146392
Tssr146393 17 10319260 to 10319282 22 - TSS region transcription start site region 146393
Tssr146394 17 10319283 to 10319294 11 - TSS region transcription start site region 146394
Tssr146395 17 10319296 to 10319317 21 - TSS region transcription start site region 146395
Tssr146396 17 10319324 to 10319380 56 - TSS region transcription start site region 146396
Tssr146397 17 10319381 to 10319392 11 - TSS region transcription start site region 146397
Gm46608 17 10319476 to 10321262 1786 - protein coding gene predicted gene, 46608
Tssr146398 17 10319596 to 10319614 18 - TSS region transcription start site region 146398
Tssr146399 17 10319748 to 10319799 51 - TSS region transcription start site region 146399
Tssr142571 17 10319894 to 10319932 38 + TSS region transcription start site region 142571
Cahm 17 10319919 to 10321141 1222 + lncRNA gene colon adenocarcinoma hypermethylated RNA
Tssr146400 17 10320326 to 10320346 20 - TSS region transcription start site region 146400
Tssr142572 17 10324594 to 10324611 17 + TSS region transcription start site region 142572
1700110C19Rik 17 10324602 to 10329307 4705 + lincRNA gene RIKEN cDNA 1700110C19 gene
Tssr142573 17 10324614 to 10324623 9 + TSS region transcription start site region 142573
Cpgi8606 17 10335069 to 10335703 634 CpG island CpG island 8606
Gm39565 17 10371564 to 10374779 3215 + lncRNA gene predicted gene, 39565
Cpgi8607 17 10371979 to 10372150 171 CpG island CpG island 8607
Cpgi8608 17 10389445 to 10389862 417 CpG island CpG island 8608
Pacrg 17 10403009 to 10840191 437182 - protein coding gene PARK2 co-regulated
D17Jcs115 17 10413849 to 10414049 200 DNA segment DNA segment, Chr 17, John C. Schimenti 115
A230009B12Rik 17 10456216 to 10493057 36841 + antisense lncRNA gene RIKEN cDNA A230009B12 gene
Tssr142574 17 10456293 to 10456298 5 + TSS region transcription start site region 142574
Tssr142575 17 10496331 to 10496342 11 + TSS region transcription start site region 142575
Tssr142576 17 10496371 to 10496396 25 + TSS region transcription start site region 142576
Tssr142577 17 10496414 to 10496428 14 + TSS region transcription start site region 142577
Tssr142578 17 10496434 to 10496441 7 + TSS region transcription start site region 142578
Gm16168 17 10496446 to 10569396 72950 + antisense lncRNA gene predicted gene 16168
D17Wtc1 17 10611363 to 10611577 214 DNA segment DNA segment, Chr 17, Wellcome Trust Centre
Tssr146401 17 10631123 to 10631164 41 - TSS region transcription start site region 146401
Tssr142579 17 10703202 to 10703207 5 + TSS region transcription start site region 142579
D17Jcs116 17 10712328 to 10712631 303 DNA segment DNA segment, Chr 17, John C. Schimenti 116
Tssr146402 17 10721537 to 10721550 13 - TSS region transcription start site region 146402
Tssr146403 17 10721555 to 10721558 3 - TSS region transcription start site region 146403
Gm16169 17 10807716 to 10818826 11110 + lncRNA gene predicted gene 16169
Tssr142580 17 10807827 to 10807841 14 + TSS region transcription start site region 142580
Cpgi8609 17 10839810 to 10841128 1318 CpG island CpG island 8609
Tssr146404 17 10839991 to 10840000 9 - TSS region transcription start site region 146404
Tssr146405 17 10840106 to 10840120 14 - TSS region transcription start site region 146405
Tssr146406 17 10840125 to 10840197 72 - TSS region transcription start site region 146406
Tssr146407 17 10840251 to 10840263 12 - TSS region transcription start site region 146407
Tssr146408 17 10840273 to 10840284 11 - TSS region transcription start site region 146408
Tssr146409 17 10840285 to 10840299 14 - TSS region transcription start site region 146409
Tssr146410 17 10840315 to 10840323 8 - TSS region transcription start site region 146410
Tssr142581 17 10840361 to 10840405 44 + TSS region transcription start site region 142581
Prkn 17 10840384 to 12063361 1222977 + protein coding gene parkin RBR E3 ubiquitin protein ligase
Tssr142582 17 10840422 to 10840437 15 + TSS region transcription start site region 142582
Tssr146411 17 10840565 to 10840585 20 - TSS region transcription start site region 146411
D17Jcs117 17 10855525 to 10855843 318 DNA segment DNA segment, Chr 17, John C. Schimenti 117
Tssr142583 17 10865099 to 10865103 4 + TSS region transcription start site region 142583
Gm3145 17 10898995 to 10899214 219 + pseudogene predicted gene 3145
D17Mit156 17 10987597 to 10987721 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 156
Lfnq4 17 10987597 to 39053168 28065571 QTL lung function QTL 4
D17Jcs75 17 10995515 to 10995719 204 DNA segment DNA segment, Chr 17, John C. Schimenti 75
Flal1 17 11000000 to 8000000 -3000000 QTL fatty liver accumulation QTL 1, females only