Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:8320760-8457728

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30 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sft2d1 17 8311103 to 8327442 16339 + protein coding gene SFT2 domain containing 1
Gm49987 17 8311109 to 8396852 85743 + unclassified gene predicted gene, 49987
Tssr142529 17 8340348 to 8340369 21 + TSS region transcription start site region 142529
Tssr142530 17 8340399 to 8340406 7 + TSS region transcription start site region 142530
Prr18 17 8340406 to 8344113 3707 + protein coding gene proline rich 18
Tssr142531 17 8340408 to 8340450 42 + TSS region transcription start site region 142531
Cpgi8588 17 8340417 to 8342255 1838 CpG island CpG island 8588
Tssr142532 17 8340455 to 8340480 25 + TSS region transcription start site region 142532
Tssr142533 17 8340492 to 8340513 21 + TSS region transcription start site region 142533
Tssr142534 17 8340601 to 8340608 7 + TSS region transcription start site region 142534
Tssr142535 17 8340710 to 8340747 37 + TSS region transcription start site region 142535
Tssr142536 17 8340997 to 8341018 21 + TSS region transcription start site region 142536
Tssr142537 17 8341027 to 8341047 20 + TSS region transcription start site region 142537
Gm46592 17 8344200 to 8348221 4021 - protein coding gene predicted gene, 46592
Tssr142538 17 8356218 to 8356231 13 + TSS region transcription start site region 142538
Gm46593 17 8362107 to 8362445 338 - pseudogene predicted gene, 46593
T2 17 8372010 to 8422728 50718 + protein coding gene brachyury 2
Tssr5001 17 8372074 to 8372097 23 + TSS region transcription start site region 5001
Gm16702 17 8379045 to 8389468 10423 - lincRNA gene predicted gene, 16702
Gm5491 17 8384053 to 8384660 607 - pseudogene predicted gene 5491
Cpgi8589 17 8389026 to 8389433 407 CpG island CpG island 8589
Cpgi8590 17 8396784 to 8396985 201 CpG island CpG island 8590
Gm34036 17 8411619 to 8415211 3592 - lncRNA gene predicted gene, 34036
Cpgi8591 17 8429656 to 8429834 178 CpG island CpG island 8591
Cpgi8592 17 8433279 to 8435355 2076 CpG island CpG island 8592
Tssr142539 17 8434265 to 8434283 18 + TSS region transcription start site region 142539
T 17 8434423 to 8442496 8073 + protein coding gene brachyury, T-box transcription factor T
Obq19 17 8443121 to 8443244 123 QTL obesity QTL 19
D17Mit143 17 8443121 to 8443244 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 143
D17Mit143.2 17 8443228 to 8443342 114 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 143.2