Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:8240710-8440747

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccr6 17 8236043 to 8257141 21098 + protein coding gene chemokine (C-C motif) receptor 6
Tssr142521 17 8245039 to 8245050 11 + TSS region transcription start site region 142521
Tssr142522 17 8245054 to 8245092 38 + TSS region transcription start site region 142522
Tssr142523 17 8256051 to 8256056 5 + TSS region transcription start site region 142523
Gm33799 17 8257037 to 8272517 15480 - lncRNA gene predicted gene, 33799
Gm8465 17 8260567 to 8262232 1665 + pseudogene predicted gene 8465
Cpgi8585 17 8260671 to 8260936 265 CpG island CpG island 8585
Tssr146356 17 8272526 to 8272529 3 - TSS region transcription start site region 146356
Cpgi8586 17 8282874 to 8284773 1899 CpG island CpG island 8586
Tssr142524 17 8283416 to 8283441 25 + TSS region transcription start site region 142524
Tssr146357 17 8283615 to 8283634 19 - TSS region transcription start site region 146357
Tssr142525 17 8283770 to 8283829 59 + TSS region transcription start site region 142525
Mpc1 17 8283813 to 8297662 13849 + protein coding gene mitochondrial pyruvate carrier 1
Tssr4999 17 8283835 to 8283846 11 + TSS region transcription start site region 4999
Tssr5000 17 8283850 to 8283861 11 + TSS region transcription start site region 5000
Tssr142526 17 8283947 to 8283971 24 + TSS region transcription start site region 142526
A630084N20Rik 17 8285448 to 8288009 2561 unclassified gene RIKEN cDNA A630084N20 gene
4930506C21Rik 17 8293366 to 8311080 17714 - lncRNA gene RIKEN cDNA 4930506C21 gene
Tssr146358 17 8299669 to 8299680 11 - TSS region transcription start site region 146358
Tssr146359 17 8299729 to 8299738 9 - TSS region transcription start site region 146359
Cpgi8587 17 8310837 to 8311497 660 CpG island CpG island 8587
Tssr142527 17 8311082 to 8311093 11 + TSS region transcription start site region 142527
Tssr142528 17 8311101 to 8311168 67 + TSS region transcription start site region 142528
Sft2d1 17 8311103 to 8327442 16339 + protein coding gene SFT2 domain containing 1
Gm49987 17 8311109 to 8396852 85743 + unclassified gene predicted gene, 49987
Tssr142529 17 8340348 to 8340369 21 + TSS region transcription start site region 142529
Tssr142530 17 8340399 to 8340406 7 + TSS region transcription start site region 142530
Prr18 17 8340406 to 8344113 3707 + protein coding gene proline rich 18
Tssr142531 17 8340408 to 8340450 42 + TSS region transcription start site region 142531
Cpgi8588 17 8340417 to 8342255 1838 CpG island CpG island 8588
Tssr142532 17 8340455 to 8340480 25 + TSS region transcription start site region 142532
Tssr142533 17 8340492 to 8340513 21 + TSS region transcription start site region 142533
Tssr142534 17 8340601 to 8340608 7 + TSS region transcription start site region 142534
Tssr142535 17 8340710 to 8340747 37 + TSS region transcription start site region 142535
Tssr142536 17 8340997 to 8341018 21 + TSS region transcription start site region 142536
Tssr142537 17 8341027 to 8341047 20 + TSS region transcription start site region 142537
Gm46592 17 8344200 to 8348221 4021 - protein coding gene predicted gene, 46592
Tssr142538 17 8356218 to 8356231 13 + TSS region transcription start site region 142538
Gm46593 17 8362107 to 8362445 338 - pseudogene predicted gene, 46593
T2 17 8372010 to 8422728 50718 + protein coding gene brachyury 2
Tssr5001 17 8372074 to 8372097 23 + TSS region transcription start site region 5001
Gm16702 17 8379045 to 8389468 10423 - lincRNA gene predicted gene, 16702
Gm5491 17 8384053 to 8384660 607 - pseudogene predicted gene 5491
Cpgi8589 17 8389026 to 8389433 407 CpG island CpG island 8589
Cpgi8590 17 8396784 to 8396985 201 CpG island CpG island 8590
Gm34036 17 8411619 to 8415211 3592 - lncRNA gene predicted gene, 34036
Cpgi8591 17 8429656 to 8429834 178 CpG island CpG island 8591
Cpgi8592 17 8433279 to 8435355 2076 CpG island CpG island 8592
Tssr142539 17 8434265 to 8434283 18 + TSS region transcription start site region 142539
T 17 8434423 to 8442496 8073 + protein coding gene brachyury, T-box transcription factor T