Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:82268640-83778827

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stheal11 17 12067324 to 83054339 70987015 QTL soft tissue heal 11
Gm9390 17 82355393 to 82356084 691 + pseudogene predicted gene 9390
D17Ertd589e 17 82367159 to 82367370 211 DNA segment DNA segment, Chr 17, ERATO Doi 589, expressed
Rpsa-ps7 17 82409935 to 82410819 884 - pseudogene ribosomal protein SA, pseudogene 7
Tssr149589 17 82410897 to 82410900 3 - TSS region transcription start site region 149589
Tssr5212 17 82539157 to 82539171 14 + TSS region transcription start site region 5212
Gm6594 17 82539260 to 82539545 285 + pseudogene predicted pseudogene 6594
Gm34211 17 82616224 to 82620486 4262 - lncRNA gene predicted gene, 34211
Gm34265 17 82773502 to 82956548 183046 - lncRNA gene predicted gene, 34265
Gm41629 17 82871836 to 82903860 32024 + lncRNA gene predicted gene, 41629
Tssr149590 17 82941032 to 82941037 5 - TSS region transcription start site region 149590
Gm4601 17 82955996 to 82956965 969 + lncRNA gene predicted gene 4601
Cpgi9546 17 82956119 to 82956538 419 CpG island CpG island 9546
Tssr149591 17 82956331 to 82956383 52 - TSS region transcription start site region 149591
Cpgi9547 17 83023640 to 83023827 187 CpG island CpG island 9547
Gm19689 17 83033592 to 83078225 44633 - lncRNA gene predicted gene, 19689
Cpgi9548 17 83042783 to 83043904 1121 CpG island CpG island 9548
D17Mit122 17 83054193 to 83054339 146 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 122
Tssr149592 17 83057970 to 83057981 11 - TSS region transcription start site region 149592
Gm29052 17 83068905 to 83070632 1727 + lincRNA gene predicted gene 29052
Gm46606 17 83098018 to 83115793 17775 - lncRNA gene predicted gene, 46606
Gm41631 17 83128045 to 83131838 3793 + lncRNA gene predicted gene, 41631
Tssr149593 17 83181629 to 83181633 4 - TSS region transcription start site region 149593
Gm34686 17 83206909 to 83214711 7802 - lncRNA gene predicted gene, 34686
Cpgi9549 17 83214195 to 83216472 2277 CpG island CpG island 9549
Tssr145981 17 83214762 to 83214774 12 + TSS region transcription start site region 145981
Tssr145982 17 83215271 to 83215289 18 + TSS region transcription start site region 145982
Pkdcc 17 83215292 to 83225070 9778 + protein coding gene protein kinase domain containing, cytoplasmic
Tssr149594 17 83221200 to 83221218 18 - TSS region transcription start site region 149594
Cpgi9550 17 83231654 to 83231884 230 CpG island CpG island 9550
Gm24240 17 83269971 to 83270105 134 + snoRNA gene predicted gene, 24240
Cpgi9551 17 83275835 to 83276778 943 CpG island CpG island 9551
Tssr149595 17 83276610 to 83276634 24 - TSS region transcription start site region 149595
Tssr145983 17 83277932 to 83277952 20 + TSS region transcription start site region 145983
Rpl21-ps7 17 83288546 to 83289060 514 + pseudogene ribosomal protein L21, pseudogene 7
Tssr145984 17 83312726 to 83312737 11 + TSS region transcription start site region 145984
Cpgi9552 17 83341124 to 83341369 245 CpG island CpG island 9552
Cpgi9553 17 83350492 to 83351905 1413 CpG island CpG island 9553
Tssr145985 17 83350925 to 83350998 73 + TSS region transcription start site region 145985
Eml4 17 83350931 to 83480361 129430 + protein coding gene echinoderm microtubule associated protein like 4
Tssr145986 17 83351005 to 83351016 11 + TSS region transcription start site region 145986
Tssr145987 17 83351029 to 83351040 11 + TSS region transcription start site region 145987
Tssr145988 17 83355066 to 83355073 7 + TSS region transcription start site region 145988
F830004D09Rik 17 83370129 to 83372420 2291 unclassified gene RIKEN cDNA F830004D09 gene
Tssr145989 17 83421596 to 83421639 43 + TSS region transcription start site region 145989
Gm46594 17 83458542 to 83490062 31520 - lncRNA gene predicted gene, 46594
Cox7a2l 17 83501917 to 83514333 12416 - protein coding gene cytochrome c oxidase subunit 7A2 like
Tssr149596 17 83502813 to 83502819 6 - TSS region transcription start site region 149596
D17Ertd96e 17 83509280 to 83509482 202 DNA segment DNA segment, Chr 17, ERATO Doi 96, expressed
Cpgi9554 17 83513962 to 83514718 756 CpG island CpG island 9554
Tssr149597 17 83514290 to 83514305 15 - TSS region transcription start site region 149597
Tssr149598 17 83514311 to 83514335 24 - TSS region transcription start site region 149598
Tssr149599 17 83514599 to 83514619 20 - TSS region transcription start site region 149599
Gm41635 17 83545680 to 83550593 4913 - lncRNA gene predicted gene, 41635
Gm34801 17 83555711 to 83567901 12190 - lncRNA gene predicted gene, 34801
Tssr149600 17 83582254 to 83582258 4 - TSS region transcription start site region 149600
Tssr149601 17 83585527 to 83585528 1 - TSS region transcription start site region 149601
Kcng3 17 83585957 to 83631895 45938 - protein coding gene potassium voltage-gated channel, subfamily G, member 3
Cpgi9555 17 83630714 to 83632877 2163 CpG island CpG island 9555
Tssr149602 17 83631892 to 83631934 42 - TSS region transcription start site region 149602
Tssr149603 17 83654669 to 83654681 12 - TSS region transcription start site region 149603
Tssr149604 17 83654702 to 83654750 48 - TSS region transcription start site region 149604
Tssr145990 17 83666806 to 83666827 21 + TSS region transcription start site region 145990
Tssr145991 17 83666835 to 83666848 13 + TSS region transcription start site region 145991
Tssr149605 17 83690445 to 83690474 29 - TSS region transcription start site region 149605
Gm46598 17 83703013 to 83705935 2922 - lncRNA gene predicted gene, 46598
Cpgi9556 17 83705594 to 83706897 1303 CpG island CpG island 9556
Tssr145992 17 83705891 to 83705913 22 + TSS region transcription start site region 145992
Tssr145993 17 83706137 to 83706169 32 + TSS region transcription start site region 145993
Mta3 17 83706163 to 83821516 115353 + protein coding gene metastasis associated 3
Tssr145994 17 83706170 to 83706200 30 + TSS region transcription start site region 145994
Tssr145995 17 83706211 to 83706260 49 + TSS region transcription start site region 145995
Tssr149606 17 83706840 to 83706884 44 - TSS region transcription start site region 149606
D17Mit162 17 83718322 to 83718438 116 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 162
Tssr145996 17 83729141 to 83729151 10 + TSS region transcription start site region 145996
Tssr145997 17 83729192 to 83729202 10 + TSS region transcription start site region 145997
Gm46597 17 83770259 to 83775630 5371 - lncRNA gene predicted gene, 46597
Tssr145998 17 83775485 to 83775492 7 + TSS region transcription start site region 145998
Tssr145999 17 83775507 to 83775516 9 + TSS region transcription start site region 145999
Tssr146000 17 83775522 to 83775539 17 + TSS region transcription start site region 146000
Tssr146001 17 83775556 to 83775603 47 + TSS region transcription start site region 146001
Tssr146002 17 83775628 to 83775637 9 + TSS region transcription start site region 146002
Tssr146003 17 83775656 to 83775667 11 + TSS region transcription start site region 146003
Tssr149607 17 83777984 to 83777989 5 - TSS region transcription start site region 149607