Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:8193366-8411080

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fgfr1op 17 8165491 to 8196477 30986 + protein coding gene Fgfr1 oncogene partner
Tssr142515 17 8195948 to 8195957 9 + TSS region transcription start site region 142515
Tssr142516 17 8195964 to 8195976 12 + TSS region transcription start site region 142516
Tssr142517 17 8236031 to 8236046 15 + TSS region transcription start site region 142517
Ccr6 17 8236043 to 8257141 21098 + protein coding gene chemokine (C-C motif) receptor 6
Tssr142518 17 8236061 to 8236075 14 + TSS region transcription start site region 142518
Tssr142519 17 8236107 to 8236118 11 + TSS region transcription start site region 142519
Tssr142520 17 8238330 to 8238337 7 + TSS region transcription start site region 142520
Tssr142521 17 8245039 to 8245050 11 + TSS region transcription start site region 142521
Tssr142522 17 8245054 to 8245092 38 + TSS region transcription start site region 142522
Tssr142523 17 8256051 to 8256056 5 + TSS region transcription start site region 142523
Gm33799 17 8257037 to 8272517 15480 - lncRNA gene predicted gene, 33799
Gm8465 17 8260567 to 8262232 1665 + pseudogene predicted gene 8465
Cpgi8585 17 8260671 to 8260936 265 CpG island CpG island 8585
Tssr146356 17 8272526 to 8272529 3 - TSS region transcription start site region 146356
Cpgi8586 17 8282874 to 8284773 1899 CpG island CpG island 8586
Tssr142524 17 8283416 to 8283441 25 + TSS region transcription start site region 142524
Tssr146357 17 8283615 to 8283634 19 - TSS region transcription start site region 146357
Tssr142525 17 8283770 to 8283829 59 + TSS region transcription start site region 142525
Mpc1 17 8283813 to 8297662 13849 + protein coding gene mitochondrial pyruvate carrier 1
Tssr4999 17 8283835 to 8283846 11 + TSS region transcription start site region 4999
Tssr5000 17 8283850 to 8283861 11 + TSS region transcription start site region 5000
Tssr142526 17 8283947 to 8283971 24 + TSS region transcription start site region 142526
A630084N20Rik 17 8285448 to 8288009 2561 unclassified gene RIKEN cDNA A630084N20 gene
4930506C21Rik 17 8293366 to 8311080 17714 - lncRNA gene RIKEN cDNA 4930506C21 gene
Tssr146358 17 8299669 to 8299680 11 - TSS region transcription start site region 146358
Tssr146359 17 8299729 to 8299738 9 - TSS region transcription start site region 146359
Cpgi8587 17 8310837 to 8311497 660 CpG island CpG island 8587
Tssr142527 17 8311082 to 8311093 11 + TSS region transcription start site region 142527
Tssr142528 17 8311101 to 8311168 67 + TSS region transcription start site region 142528
Sft2d1 17 8311103 to 8327442 16339 + protein coding gene SFT2 domain containing 1
Gm49987 17 8311109 to 8396852 85743 + unclassified gene predicted gene, 49987
Tssr142529 17 8340348 to 8340369 21 + TSS region transcription start site region 142529
Tssr142530 17 8340399 to 8340406 7 + TSS region transcription start site region 142530
Prr18 17 8340406 to 8344113 3707 + protein coding gene proline rich 18
Tssr142531 17 8340408 to 8340450 42 + TSS region transcription start site region 142531
Cpgi8588 17 8340417 to 8342255 1838 CpG island CpG island 8588
Tssr142532 17 8340455 to 8340480 25 + TSS region transcription start site region 142532
Tssr142533 17 8340492 to 8340513 21 + TSS region transcription start site region 142533
Tssr142534 17 8340601 to 8340608 7 + TSS region transcription start site region 142534
Tssr142535 17 8340710 to 8340747 37 + TSS region transcription start site region 142535
Tssr142536 17 8340997 to 8341018 21 + TSS region transcription start site region 142536
Tssr142537 17 8341027 to 8341047 20 + TSS region transcription start site region 142537
Gm46592 17 8344200 to 8348221 4021 - protein coding gene predicted gene, 46592
Tssr142538 17 8356218 to 8356231 13 + TSS region transcription start site region 142538
Gm46593 17 8362107 to 8362445 338 - pseudogene predicted gene, 46593
T2 17 8372010 to 8422728 50718 + protein coding gene brachyury 2
Tssr5001 17 8372074 to 8372097 23 + TSS region transcription start site region 5001
Gm16702 17 8379045 to 8389468 10423 - lincRNA gene predicted gene, 16702
Gm5491 17 8384053 to 8384660 607 - pseudogene predicted gene 5491
Cpgi8589 17 8389026 to 8389433 407 CpG island CpG island 8589
Cpgi8590 17 8396784 to 8396985 201 CpG island CpG island 8590