Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:8180783-9360789

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fgfr1op 17 8165491 to 8196477 30986 + protein coding gene Fgfr1 oncogene partner
Tssr142515 17 8195948 to 8195957 9 + TSS region transcription start site region 142515
Tssr142516 17 8195964 to 8195976 12 + TSS region transcription start site region 142516
Tssr142517 17 8236031 to 8236046 15 + TSS region transcription start site region 142517
Ccr6 17 8236043 to 8257141 21098 + protein coding gene chemokine (C-C motif) receptor 6
Tssr142518 17 8236061 to 8236075 14 + TSS region transcription start site region 142518
Tssr142519 17 8236107 to 8236118 11 + TSS region transcription start site region 142519
Tssr142520 17 8238330 to 8238337 7 + TSS region transcription start site region 142520
Tssr142521 17 8245039 to 8245050 11 + TSS region transcription start site region 142521
Tssr142522 17 8245054 to 8245092 38 + TSS region transcription start site region 142522
Tssr142523 17 8256051 to 8256056 5 + TSS region transcription start site region 142523
Gm33799 17 8257037 to 8272517 15480 - lncRNA gene predicted gene, 33799
Gm8465 17 8260567 to 8262232 1665 + pseudogene predicted gene 8465
Cpgi8585 17 8260671 to 8260936 265 CpG island CpG island 8585
Tssr146356 17 8272526 to 8272529 3 - TSS region transcription start site region 146356
Cpgi8586 17 8282874 to 8284773 1899 CpG island CpG island 8586
Tssr142524 17 8283416 to 8283441 25 + TSS region transcription start site region 142524
Tssr146357 17 8283615 to 8283634 19 - TSS region transcription start site region 146357
Tssr142525 17 8283770 to 8283829 59 + TSS region transcription start site region 142525
Mpc1 17 8283813 to 8297662 13849 + protein coding gene mitochondrial pyruvate carrier 1
Tssr4999 17 8283835 to 8283846 11 + TSS region transcription start site region 4999
Tssr5000 17 8283850 to 8283861 11 + TSS region transcription start site region 5000
Tssr142526 17 8283947 to 8283971 24 + TSS region transcription start site region 142526
A630084N20Rik 17 8285448 to 8288009 2561 unclassified gene RIKEN cDNA A630084N20 gene
4930506C21Rik 17 8293366 to 8311080 17714 - lncRNA gene RIKEN cDNA 4930506C21 gene
Tssr146358 17 8299669 to 8299680 11 - TSS region transcription start site region 146358
Tssr146359 17 8299729 to 8299738 9 - TSS region transcription start site region 146359
Cpgi8587 17 8310837 to 8311497 660 CpG island CpG island 8587
Tssr142527 17 8311082 to 8311093 11 + TSS region transcription start site region 142527
Tssr142528 17 8311101 to 8311168 67 + TSS region transcription start site region 142528
Sft2d1 17 8311103 to 8327442 16339 + protein coding gene SFT2 domain containing 1
Gm49987 17 8311109 to 8396852 85743 + unclassified gene predicted gene, 49987
Tssr142529 17 8340348 to 8340369 21 + TSS region transcription start site region 142529
Tssr142530 17 8340399 to 8340406 7 + TSS region transcription start site region 142530
Prr18 17 8340406 to 8344113 3707 + protein coding gene proline rich 18
Tssr142531 17 8340408 to 8340450 42 + TSS region transcription start site region 142531
Cpgi8588 17 8340417 to 8342255 1838 CpG island CpG island 8588
Tssr142532 17 8340455 to 8340480 25 + TSS region transcription start site region 142532
Tssr142533 17 8340492 to 8340513 21 + TSS region transcription start site region 142533
Tssr142534 17 8340601 to 8340608 7 + TSS region transcription start site region 142534
Tssr142535 17 8340710 to 8340747 37 + TSS region transcription start site region 142535
Tssr142536 17 8340997 to 8341018 21 + TSS region transcription start site region 142536
Tssr142537 17 8341027 to 8341047 20 + TSS region transcription start site region 142537
Gm46592 17 8344200 to 8348221 4021 - protein coding gene predicted gene, 46592
Tssr142538 17 8356218 to 8356231 13 + TSS region transcription start site region 142538
Gm46593 17 8362107 to 8362445 338 - pseudogene predicted gene, 46593
T2 17 8372010 to 8422728 50718 + protein coding gene brachyury 2
Tssr5001 17 8372074 to 8372097 23 + TSS region transcription start site region 5001
Gm16702 17 8379045 to 8389468 10423 - lincRNA gene predicted gene, 16702
Gm5491 17 8384053 to 8384660 607 - pseudogene predicted gene 5491
Cpgi8589 17 8389026 to 8389433 407 CpG island CpG island 8589
Cpgi8590 17 8396784 to 8396985 201 CpG island CpG island 8590
Gm34036 17 8411619 to 8415211 3592 - lncRNA gene predicted gene, 34036
Cpgi8591 17 8429656 to 8429834 178 CpG island CpG island 8591
Cpgi8592 17 8433279 to 8435355 2076 CpG island CpG island 8592
Tssr142539 17 8434265 to 8434283 18 + TSS region transcription start site region 142539
T 17 8434423 to 8442496 8073 + protein coding gene brachyury, T-box transcription factor T
D17Mit143 17 8443121 to 8443244 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 143
Obq19 17 8443121 to 8443244 123 QTL obesity QTL 19
D17Mit143.2 17 8443228 to 8443342 114 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 143.2
D17Mit246 17 8459684 to 8459785 101 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 246
Tssr142540 17 8500464 to 8500480 16 + TSS region transcription start site region 142540
Cpgi8593 17 8506018 to 8506303 285 CpG island CpG island 8593
Tssr5002 17 8506335 to 8506353 18 + TSS region transcription start site region 5002
Cpgi8594 17 8513475 to 8513712 237 CpG island CpG island 8594
Cpgi8595 17 8524574 to 8526182 1608 CpG island CpG island 8595
Tssr146360 17 8524852 to 8524878 26 - TSS region transcription start site region 146360
Tssr142541 17 8525174 to 8525190 16 + TSS region transcription start site region 142541
Tssr142542 17 8525197 to 8525239 42 + TSS region transcription start site region 142542
Tssr142543 17 8525245 to 8525254 9 + TSS region transcription start site region 142543
Tssr142544 17 8525369 to 8525396 27 + TSS region transcription start site region 142544
Pde10a 17 8525372 to 8986648 461276 + protein coding gene phosphodiesterase 10A
Tssr142545 17 8525434 to 8525444 10 + TSS region transcription start site region 142545
Tssr142546 17 8526996 to 8527025 29 + TSS region transcription start site region 142546
Gm15425 17 8564227 to 8565197 970 - pseudogene predicted gene 15425
Tssr142547 17 8565487 to 8565494 7 + TSS region transcription start site region 142547
Tssr146361 17 8565534 to 8565567 33 - TSS region transcription start site region 146361
Tssr146362 17 8565692 to 8565705 13 - TSS region transcription start site region 146362
Gm17087 17 8565852 to 8566950 1098 - pseudogene predicted gene 17087
Tssr146363 17 8566581 to 8566621 40 - TSS region transcription start site region 146363
Tssr142548 17 8582392 to 8582411 19 + TSS region transcription start site region 142548
Tssr142549 17 8582638 to 8582649 11 + TSS region transcription start site region 142549
Cpgi8596 17 8592933 to 8593151 218 CpG island CpG island 8596
D17Mit25a 17 8606541 to 8606651 110 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 25a
D17Mit25b 17 8606541 to 8606693 152 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 25b
5330430B06Rik 17 8611367 to 8612875 1508 unclassified gene RIKEN cDNA 5330430B06 gene
Tssr142550 17 8663834 to 8663848 14 + TSS region transcription start site region 142550
D17Mit170 17 8699518 to 8699802 284 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology-170
Gm46585 17 8703925 to 8711406 7481 - lncRNA gene predicted gene, 46585
Tssr146364 17 8734741 to 8734742 1 - TSS region transcription start site region 146364
D17Mit48 17 8754187 to 8754352 165 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 48
Gm15426 17 8765372 to 8765927 555 - pseudogene predicted gene 15426
Tssr142551 17 8770783 to 8770789 6 + TSS region transcription start site region 142551
Tssr142552 17 8782263 to 8782265 2 + TSS region transcription start site region 142552
Cpgi8597 17 8800544 to 8802593 2049 CpG island CpG island 8597
Tssr142553 17 8800661 to 8800682 21 + TSS region transcription start site region 142553
Tssr142554 17 8801460 to 8801497 37 + TSS region transcription start site region 142554
Tssr142555 17 8801640 to 8801682 42 + TSS region transcription start site region 142555
Tssr142556 17 8801706 to 8801721 15 + TSS region transcription start site region 142556
Tssr142557 17 8801742 to 8801751 9 + TSS region transcription start site region 142557
Tssr142558 17 8801768 to 8801788 20 + TSS region transcription start site region 142558
Cpgi8598 17 8803045 to 8803387 342 CpG island CpG island 8598
Gm34321 17 8821039 to 8826050 5011 + lncRNA gene predicted gene, 34321
Tssr142559 17 8849923 to 8849933 10 + TSS region transcription start site region 142559
Tssr142560 17 8849974 to 8850001 27 + TSS region transcription start site region 142560
Cpgi8599 17 8856418 to 8856795 377 CpG island CpG island 8599
Cpgi8600 17 8867591 to 8868059 468 CpG island CpG island 8600
Tssr146365 17 8923950 to 8923997 47 - TSS region transcription start site region 146365
Tssr142561 17 8924109 to 8924128 19 + TSS region transcription start site region 142561
C030004M13Rik 17 8937279 to 8938340 1061 unclassified gene RIKEN cDNA C030004M13 gene
Pifs2 17 8970523 to 8970523 0 QTL peptide-induced fatal syndrome 2
Lith3 17 8975505 to 8975624 119 QTL lithogenic gene 3
D17Mit247 17 8975505 to 8975624 119 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 247
D17Pri2 17 8975535 to 8975699 164 DNA segment DNA segment, Chr 17, Princeton University 2
1700010I14Rik 17 8988320 to 9008319 19999 + protein coding gene RIKEN cDNA 1700010I14 gene
Tssr142562 17 8988340 to 8988347 7 + TSS region transcription start site region 142562
Tssr142563 17 8988348 to 8988395 47 + TSS region transcription start site region 142563
Tssr142564 17 8992239 to 8992274 35 + TSS region transcription start site region 142564
D17Pri3 17 8992737 to 8992820 83 DNA segment DNA segment, Chr 17, Princeton University 3
D17Mit225 17 9010494 to 9010616 122 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 225
Tssr142565 17 9030614 to 9030619 5 + TSS region transcription start site region 142565
Cpgi8601 17 9031560 to 9031775 215 CpG island CpG island 8601
Gm29711 17 9102678 to 9103132 454 + lncRNA gene predicted gene, 29711
6530411M01Rik 17 9147719 to 9167836 20117 - lincRNA gene RIKEN cDNA 6530411M01 gene
Cpgi8602 17 9167292 to 9167713 421 CpG island CpG island 8602
Cpgi8603 17 9168304 to 9168479 175 CpG island CpG island 8603
C87487 17 9189126 to 9223664 34538 + lincRNA gene expressed sequence C87487
Gm49806 17 9246550 to 9248548 1998 + unclassified gene predicted gene, 49806
Gm8492 17 9320395 to 9321381 986 - pseudogene predicted gene 8492
Gm7947 17 9321902 to 9323795 1893 - pseudogene predicted gene 7947