Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:80791321-87402213

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756 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stheal11 17 12067324 to 83054339 70987015 QTL soft tissue heal 11
Tssr149509 17 80801007 to 80801043 36 - TSS region transcription start site region 149509
Gm33596 17 80807231 to 80809434 2203 - lncRNA gene predicted gene, 33596
C230072F16Rik 17 80896793 to 80933045 36252 + lincRNA gene RIKEN cDNA C230072F16 gene
Tssr145971 17 80896812 to 80896841 29 + TSS region transcription start site region 145971
Tssr145972 17 80896843 to 80896854 11 + TSS region transcription start site region 145972
D17Mit1002 17 80911787 to 80911924 137 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1002
D17Mit1002.3 17 80911937 to 80912079 142 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1002.3
Tssr149510 17 80933479 to 80933497 18 - TSS region transcription start site region 149510
Tssr149511 17 80933822 to 80933831 9 - TSS region transcription start site region 149511
Gm9386 17 80938346 to 80938714 368 - pseudogene predicted pseudogene 9386
Tssr145973 17 80943826 to 80943857 31 + TSS region transcription start site region 145973
Tssr145974 17 80943981 to 80944004 23 + TSS region transcription start site region 145974
Cpgi9543 17 80944118 to 80945248 1130 CpG island CpG island 9543
Tssr145975 17 80944611 to 80944644 33 + TSS region transcription start site region 145975
Tmem178 17 80944632 to 81001816 57184 + protein coding gene transmembrane protein 178
Tssr145976 17 80944650 to 80944671 21 + TSS region transcription start site region 145976
D17Mit258 17 80946564 to 80946677 113 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 258
Tssr145977 17 80996093 to 80996097 4 + TSS region transcription start site region 145977
Tssr145978 17 80997895 to 80997899 4 + TSS region transcription start site region 145978
Thumpd2 17 81026332 to 81065082 38750 - protein coding gene THUMP domain containing 2
Tssr145979 17 81046981 to 81046996 15 + TSS region transcription start site region 145979
Cpgi9544 17 81064786 to 81065268 482 CpG island CpG island 9544
Tssr149512 17 81065056 to 81065099 43 - TSS region transcription start site region 149512
D17Mit1008 17 81228217 to 81228388 171 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1008
Gm50042 17 81246360 to 81246738 378 - pseudogene predicted gene, 50042
Gm33944 17 81284954 to 81317615 32661 + lncRNA gene predicted gene, 33944
Gm50043 17 81297300 to 81297744 444 - pseudogene predicted gene, 50043
Gm34070 17 81335857 to 81353337 17480 + lncRNA gene predicted gene, 34070
Gm41627 17 81354217 to 81359061 4844 + lncRNA gene predicted gene, 41627
Gm50044 17 81370833 to 81376294 5461 + antisense lncRNA gene predicted gene, 50044
Slc8a1 17 81373105 to 81738377 365272 - protein coding gene solute carrier family 8 (sodium/calcium exchanger), member 1
Tssr149513 17 81375434 to 81375446 12 - TSS region transcription start site region 149513
Tssr149514 17 81375452 to 81375464 12 - TSS region transcription start site region 149514
Tssr5210 17 81375483 to 81375498 15 - TSS region transcription start site region 5210
Tssr149515 17 81375521 to 81375534 13 - TSS region transcription start site region 149515
Tssr149516 17 81375884 to 81375901 17 - TSS region transcription start site region 149516
Tssr149517 17 81375984 to 81375999 15 - TSS region transcription start site region 149517
Tssr149518 17 81376084 to 81376094 10 - TSS region transcription start site region 149518
Tssr149519 17 81378918 to 81378936 18 - TSS region transcription start site region 149519
Tssr149520 17 81378942 to 81378954 12 - TSS region transcription start site region 149520
Tssr149521 17 81379046 to 81379060 14 - TSS region transcription start site region 149521
Tssr149522 17 81379108 to 81379122 14 - TSS region transcription start site region 149522
Tssr149523 17 81380645 to 81380676 31 - TSS region transcription start site region 149523
Tssr149524 17 81385435 to 81385440 5 - TSS region transcription start site region 149524
Tssr149525 17 81388273 to 81388276 3 - TSS region transcription start site region 149525
Tssr149526 17 81388326 to 81388341 15 - TSS region transcription start site region 149526
Tssr149527 17 81419859 to 81419863 4 - TSS region transcription start site region 149527
2900042E19Rik 17 81438505 to 81439855 1350 unclassified gene RIKEN cDNA 2900042E19 gene
Gm11096 17 81441763 to 81441923 160 + protein coding gene predicted gene 11096
Tssr149528 17 81465635 to 81465638 3 - TSS region transcription start site region 149528
Tssr149529 17 81471282 to 81471294 12 - TSS region transcription start site region 149529
Tssr149530 17 81473543 to 81473552 9 - TSS region transcription start site region 149530
Tssr149531 17 81481490 to 81481495 5 - TSS region transcription start site region 149531
Tssr149532 17 81493445 to 81493457 12 - TSS region transcription start site region 149532
Tssr149533 17 81498497 to 81498509 12 - TSS region transcription start site region 149533
Tssr149534 17 81498763 to 81498811 48 - TSS region transcription start site region 149534
Tssr149535 17 81499060 to 81499065 5 - TSS region transcription start site region 149535
D17Mit243 17 81507422 to 81507517 95 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 243
Tssr149536 17 81512909 to 81512923 14 - TSS region transcription start site region 149536
Tssr149537 17 81512931 to 81512945 14 - TSS region transcription start site region 149537
Tssr149538 17 81513058 to 81513071 13 - TSS region transcription start site region 149538
Tssr149539 17 81513093 to 81513105 12 - TSS region transcription start site region 149539
Tssr149540 17 81520183 to 81520187 4 - TSS region transcription start site region 149540
Tssr149541 17 81520520 to 81520558 38 - TSS region transcription start site region 149541
Tssr149542 17 81561953 to 81561959 6 - TSS region transcription start site region 149542
Tssr149543 17 81568701 to 81568706 5 - TSS region transcription start site region 149543
Tssr149544 17 81580625 to 81580627 2 - TSS region transcription start site region 149544
Tssr149545 17 81582136 to 81582153 17 - TSS region transcription start site region 149545
Tssr149546 17 81582166 to 81582184 18 - TSS region transcription start site region 149546
Tssr149547 17 81582237 to 81582251 14 - TSS region transcription start site region 149547
Tssr149548 17 81582635 to 81582646 11 - TSS region transcription start site region 149548
Tssr149549 17 81598272 to 81598280 8 - TSS region transcription start site region 149549
Tssr149550 17 81601215 to 81601219 4 - TSS region transcription start site region 149550
D330045E12Rik 17 81604173 to 81606155 1982 unclassified gene RIKEN cDNA D330045E12 gene
Tssr149551 17 81604267 to 81604286 19 - TSS region transcription start site region 149551
Tssr149552 17 81606122 to 81606126 4 - TSS region transcription start site region 149552
Tssr149553 17 81620462 to 81620466 4 - TSS region transcription start site region 149553
Tssr149554 17 81622462 to 81622465 3 - TSS region transcription start site region 149554
Tssr149555 17 81625150 to 81625153 3 - TSS region transcription start site region 149555
Tssr149556 17 81627735 to 81627756 21 - TSS region transcription start site region 149556
Tssr149557 17 81627877 to 81627888 11 - TSS region transcription start site region 149557
Tssr149558 17 81627897 to 81627925 28 - TSS region transcription start site region 149558
Tssr149559 17 81629024 to 81629028 4 - TSS region transcription start site region 149559
Tssr149560 17 81629352 to 81629357 5 - TSS region transcription start site region 149560
Tssr149561 17 81647854 to 81647865 11 - TSS region transcription start site region 149561
Tssr149562 17 81648846 to 81648857 11 - TSS region transcription start site region 149562
Cpgi9545 17 81669459 to 81670754 1295 CpG island CpG island 9545
Tssr149563 17 81670123 to 81670134 11 - TSS region transcription start site region 149563
Tssr149564 17 81670145 to 81670158 13 - TSS region transcription start site region 149564
Tssr149565 17 81670161 to 81670261 100 - TSS region transcription start site region 149565
Tssr149566 17 81671658 to 81671672 14 - TSS region transcription start site region 149566
9530032E18Rik 17 81682170 to 81682982 812 unclassified gene RIKEN cDNA 9530032E18 gene
Tssr149567 17 81697686 to 81697690 4 - TSS region transcription start site region 149567
Gm34131 17 81704105 to 81742507 38402 + lncRNA gene predicted gene, 34131
Tssr149568 17 81704782 to 81704810 28 - TSS region transcription start site region 149568
Tssr149569 17 81704874 to 81704899 25 - TSS region transcription start site region 149569
Tssr145980 17 81705120 to 81705146 26 + TSS region transcription start site region 145980
Tssr149570 17 81707599 to 81707600 1 - TSS region transcription start site region 149570
Tssr149571 17 81712907 to 81712913 6 - TSS region transcription start site region 149571
Tssr149572 17 81713026 to 81713037 11 - TSS region transcription start site region 149572
Tssr149573 17 81725591 to 81725595 4 - TSS region transcription start site region 149573
Tssr149574 17 81730885 to 81730892 7 - TSS region transcription start site region 149574
Tssr149575 17 81730905 to 81730923 18 - TSS region transcription start site region 149575
Tssr149576 17 81730925 to 81730943 18 - TSS region transcription start site region 149576
Tssr149577 17 81730986 to 81730995 9 - TSS region transcription start site region 149577
Tssr149578 17 81731115 to 81731126 11 - TSS region transcription start site region 149578
Tssr149579 17 81731249 to 81731261 12 - TSS region transcription start site region 149579
Tssr149580 17 81731275 to 81731284 9 - TSS region transcription start site region 149580
Tssr149581 17 81731431 to 81731440 9 - TSS region transcription start site region 149581
Tssr149582 17 81731515 to 81731527 12 - TSS region transcription start site region 149582
Tssr149583 17 81732972 to 81732975 3 - TSS region transcription start site region 149583
Tssr149584 17 81738355 to 81738366 11 - TSS region transcription start site region 149584
Tssr149585 17 81738371 to 81738400 29 - TSS region transcription start site region 149585
Tssr5211 17 81738416 to 81738462 46 - TSS region transcription start site region 5211
Tssr149586 17 81789362 to 81789367 5 - TSS region transcription start site region 149586
Rpl31-ps25 17 81791555 to 81791933 378 - pseudogene ribosomal protein L31. pseudogene 25
Tssr149587 17 81838414 to 81838442 28 - TSS region transcription start site region 149587
Tssr149588 17 81838491 to 81838522 31 - TSS region transcription start site region 149588
Ffal1 17 81907509 to 81907644 135 QTL free fatty acid level 1
D17Mit132 17 81907509 to 81907644 135 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 132
D17Mit188 17 81953920 to 81954040 120 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 188
Gm4599 17 81955451 to 81956273 822 - pseudogene predicted gene 4599
D17Mit209 17 82134690 to 82134814 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 209
Gm50045 17 82191968 to 82192609 641 - pseudogene predicted gene, 50045
Gm27359 17 82193755 to 82193864 109 + miRNA gene predicted gene, 27359
Gm22386 17 82232144 to 82232272 128 - snoRNA gene predicted gene, 22386
Gm23400 17 82235877 to 82235978 101 + miRNA gene predicted gene, 23400
Gm9390 17 82355393 to 82356084 691 + pseudogene predicted gene 9390
D17Ertd589e 17 82367159 to 82367370 211 DNA segment DNA segment, Chr 17, ERATO Doi 589, expressed
Rpsa-ps7 17 82409935 to 82410819 884 - pseudogene ribosomal protein SA, pseudogene 7
Tssr149589 17 82410897 to 82410900 3 - TSS region transcription start site region 149589
Tssr5212 17 82539157 to 82539171 14 + TSS region transcription start site region 5212
Gm6594 17 82539260 to 82539545 285 + pseudogene predicted pseudogene 6594
Gm34211 17 82616224 to 82620486 4262 - lncRNA gene predicted gene, 34211
Gm34265 17 82773502 to 82956548 183046 - lncRNA gene predicted gene, 34265
Gm41629 17 82871836 to 82903860 32024 + lncRNA gene predicted gene, 41629
Tssr149590 17 82941032 to 82941037 5 - TSS region transcription start site region 149590
Gm4601 17 82955996 to 82956965 969 + lncRNA gene predicted gene 4601
Cpgi9546 17 82956119 to 82956538 419 CpG island CpG island 9546
Tssr149591 17 82956331 to 82956383 52 - TSS region transcription start site region 149591
Cpgi9547 17 83023640 to 83023827 187 CpG island CpG island 9547
Gm19689 17 83033592 to 83078225 44633 - lncRNA gene predicted gene, 19689
Cpgi9548 17 83042783 to 83043904 1121 CpG island CpG island 9548
D17Mit122 17 83054193 to 83054339 146 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 122
Tssr149592 17 83057970 to 83057981 11 - TSS region transcription start site region 149592
Gm29052 17 83068905 to 83070632 1727 + lincRNA gene predicted gene 29052
Gm46606 17 83098018 to 83115793 17775 - lncRNA gene predicted gene, 46606
Gm41631 17 83128045 to 83131838 3793 + lncRNA gene predicted gene, 41631
Tssr149593 17 83181629 to 83181633 4 - TSS region transcription start site region 149593
Gm34686 17 83206909 to 83214711 7802 - lncRNA gene predicted gene, 34686
Cpgi9549 17 83214195 to 83216472 2277 CpG island CpG island 9549
Tssr145981 17 83214762 to 83214774 12 + TSS region transcription start site region 145981
Tssr145982 17 83215271 to 83215289 18 + TSS region transcription start site region 145982
Pkdcc 17 83215292 to 83225070 9778 + protein coding gene protein kinase domain containing, cytoplasmic
Tssr149594 17 83221200 to 83221218 18 - TSS region transcription start site region 149594
Cpgi9550 17 83231654 to 83231884 230 CpG island CpG island 9550
Gm24240 17 83269971 to 83270105 134 + snoRNA gene predicted gene, 24240
Cpgi9551 17 83275835 to 83276778 943 CpG island CpG island 9551
Tssr149595 17 83276610 to 83276634 24 - TSS region transcription start site region 149595
Tssr145983 17 83277932 to 83277952 20 + TSS region transcription start site region 145983
Rpl21-ps7 17 83288546 to 83289060 514 + pseudogene ribosomal protein L21, pseudogene 7
Tssr145984 17 83312726 to 83312737 11 + TSS region transcription start site region 145984
Cpgi9552 17 83341124 to 83341369 245 CpG island CpG island 9552
Cpgi9553 17 83350492 to 83351905 1413 CpG island CpG island 9553
Tssr145985 17 83350925 to 83350998 73 + TSS region transcription start site region 145985
Eml4 17 83350931 to 83480361 129430 + protein coding gene echinoderm microtubule associated protein like 4
Tssr145986 17 83351005 to 83351016 11 + TSS region transcription start site region 145986
Tssr145987 17 83351029 to 83351040 11 + TSS region transcription start site region 145987
Tssr145988 17 83355066 to 83355073 7 + TSS region transcription start site region 145988
F830004D09Rik 17 83370129 to 83372420 2291 unclassified gene RIKEN cDNA F830004D09 gene
Tssr145989 17 83421596 to 83421639 43 + TSS region transcription start site region 145989
Gm46594 17 83458542 to 83490062 31520 - lncRNA gene predicted gene, 46594
Cox7a2l 17 83501917 to 83514333 12416 - protein coding gene cytochrome c oxidase subunit 7A2 like
Tssr149596 17 83502813 to 83502819 6 - TSS region transcription start site region 149596
D17Ertd96e 17 83509280 to 83509482 202 DNA segment DNA segment, Chr 17, ERATO Doi 96, expressed
Cpgi9554 17 83513962 to 83514718 756 CpG island CpG island 9554
Tssr149597 17 83514290 to 83514305 15 - TSS region transcription start site region 149597
Tssr149598 17 83514311 to 83514335 24 - TSS region transcription start site region 149598
Tssr149599 17 83514599 to 83514619 20 - TSS region transcription start site region 149599
Gm41635 17 83545680 to 83550593 4913 - lncRNA gene predicted gene, 41635
Gm34801 17 83555711 to 83567901 12190 - lncRNA gene predicted gene, 34801
Tssr149600 17 83582254 to 83582258 4 - TSS region transcription start site region 149600
Tssr149601 17 83585527 to 83585528 1 - TSS region transcription start site region 149601
Kcng3 17 83585957 to 83631895 45938 - protein coding gene potassium voltage-gated channel, subfamily G, member 3
Cpgi9555 17 83630714 to 83632877 2163 CpG island CpG island 9555
Tssr149602 17 83631892 to 83631934 42 - TSS region transcription start site region 149602
Tssr149603 17 83654669 to 83654681 12 - TSS region transcription start site region 149603
Tssr149604 17 83654702 to 83654750 48 - TSS region transcription start site region 149604
Tssr145990 17 83666806 to 83666827 21 + TSS region transcription start site region 145990
Tssr145991 17 83666835 to 83666848 13 + TSS region transcription start site region 145991
Tssr149605 17 83690445 to 83690474 29 - TSS region transcription start site region 149605
Gm46598 17 83703013 to 83705935 2922 - lncRNA gene predicted gene, 46598
Cpgi9556 17 83705594 to 83706897 1303 CpG island CpG island 9556
Tssr145992 17 83705891 to 83705913 22 + TSS region transcription start site region 145992
Tssr145993 17 83706137 to 83706169 32 + TSS region transcription start site region 145993
Mta3 17 83706163 to 83821516 115353 + protein coding gene metastasis associated 3
Tssr145994 17 83706170 to 83706200 30 + TSS region transcription start site region 145994
Tssr145995 17 83706211 to 83706260 49 + TSS region transcription start site region 145995
Tssr149606 17 83706840 to 83706884 44 - TSS region transcription start site region 149606