Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:80669786-81460268

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Map4k3 17 80580513 to 80728205 147692 - protein coding gene mitogen-activated protein kinase kinase kinase kinase 3
Tssr149501 17 80670943 to 80670953 10 - TSS region transcription start site region 149501
Tssr149502 17 80680045 to 80680054 9 - TSS region transcription start site region 149502
Tssr149503 17 80700751 to 80700779 28 - TSS region transcription start site region 149503
Tssr149504 17 80702007 to 80702020 13 - TSS region transcription start site region 149504
Cpgi9541 17 80709965 to 80710195 230 CpG island CpG island 9541
Tssr149505 17 80726610 to 80726615 5 - TSS region transcription start site region 149505
Cpgi9542 17 80727373 to 80728790 1417 CpG island CpG island 9542
Tssr149506 17 80727996 to 80728019 23 - TSS region transcription start site region 149506
Tssr149507 17 80728026 to 80728061 35 - TSS region transcription start site region 149507
Tssr149508 17 80728130 to 80728171 41 - TSS region transcription start site region 149508
Gm9959 17 80728131 to 80728522 391 + pseudogene predicted gene 9959
Tssr145969 17 80762844 to 80762857 13 + TSS region transcription start site region 145969
Tssr145970 17 80762893 to 80762904 11 + TSS region transcription start site region 145970
Gm33538 17 80783791 to 80785261 1470 - lncRNA gene predicted gene, 33538
Tssr149509 17 80801007 to 80801043 36 - TSS region transcription start site region 149509
Gm33596 17 80807231 to 80809434 2203 - lncRNA gene predicted gene, 33596
C230072F16Rik 17 80896793 to 80933045 36252 + lincRNA gene RIKEN cDNA C230072F16 gene
Tssr145971 17 80896812 to 80896841 29 + TSS region transcription start site region 145971
Tssr145972 17 80896843 to 80896854 11 + TSS region transcription start site region 145972
D17Mit1002 17 80911787 to 80911924 137 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1002
D17Mit1002.3 17 80911937 to 80912079 142 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1002.3
Tssr149510 17 80933479 to 80933497 18 - TSS region transcription start site region 149510
Tssr149511 17 80933822 to 80933831 9 - TSS region transcription start site region 149511
Gm9386 17 80938346 to 80938714 368 - pseudogene predicted pseudogene 9386
Tssr145973 17 80943826 to 80943857 31 + TSS region transcription start site region 145973
Tssr145974 17 80943981 to 80944004 23 + TSS region transcription start site region 145974
Cpgi9543 17 80944118 to 80945248 1130 CpG island CpG island 9543
Tssr145975 17 80944611 to 80944644 33 + TSS region transcription start site region 145975
Tmem178 17 80944632 to 81001816 57184 + protein coding gene transmembrane protein 178
Tssr145976 17 80944650 to 80944671 21 + TSS region transcription start site region 145976
D17Mit258 17 80946564 to 80946677 113 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 258
Tssr145977 17 80996093 to 80996097 4 + TSS region transcription start site region 145977
Tssr145978 17 80997895 to 80997899 4 + TSS region transcription start site region 145978
Thumpd2 17 81026332 to 81065082 38750 - protein coding gene THUMP domain containing 2
Tssr145979 17 81046981 to 81046996 15 + TSS region transcription start site region 145979
Cpgi9544 17 81064786 to 81065268 482 CpG island CpG island 9544
Tssr149512 17 81065056 to 81065099 43 - TSS region transcription start site region 149512
D17Mit1008 17 81228217 to 81228388 171 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1008
Gm50042 17 81246360 to 81246738 378 - pseudogene predicted gene, 50042
Gm33944 17 81284954 to 81317615 32661 + lncRNA gene predicted gene, 33944
Gm50043 17 81297300 to 81297744 444 - pseudogene predicted gene, 50043
Gm34070 17 81335857 to 81353337 17480 + lncRNA gene predicted gene, 34070
Gm41627 17 81354217 to 81359061 4844 + lncRNA gene predicted gene, 41627
Gm50044 17 81370833 to 81376294 5461 + antisense lncRNA gene predicted gene, 50044
Slc8a1 17 81373105 to 81738377 365272 - protein coding gene solute carrier family 8 (sodium/calcium exchanger), member 1
Tssr149513 17 81375434 to 81375446 12 - TSS region transcription start site region 149513
Tssr149514 17 81375452 to 81375464 12 - TSS region transcription start site region 149514
Tssr5210 17 81375483 to 81375498 15 - TSS region transcription start site region 5210
Tssr149515 17 81375521 to 81375534 13 - TSS region transcription start site region 149515
Tssr149516 17 81375884 to 81375901 17 - TSS region transcription start site region 149516
Tssr149517 17 81375984 to 81375999 15 - TSS region transcription start site region 149517
Tssr149518 17 81376084 to 81376094 10 - TSS region transcription start site region 149518
Tssr149519 17 81378918 to 81378936 18 - TSS region transcription start site region 149519
Tssr149520 17 81378942 to 81378954 12 - TSS region transcription start site region 149520
Tssr149521 17 81379046 to 81379060 14 - TSS region transcription start site region 149521
Tssr149522 17 81379108 to 81379122 14 - TSS region transcription start site region 149522
Tssr149523 17 81380645 to 81380676 31 - TSS region transcription start site region 149523
Tssr149524 17 81385435 to 81385440 5 - TSS region transcription start site region 149524
Tssr149525 17 81388273 to 81388276 3 - TSS region transcription start site region 149525
Tssr149526 17 81388326 to 81388341 15 - TSS region transcription start site region 149526
Tssr149527 17 81419859 to 81419863 4 - TSS region transcription start site region 149527
2900042E19Rik 17 81438505 to 81439855 1350 unclassified gene RIKEN cDNA 2900042E19 gene
Gm11096 17 81441763 to 81441923 160 + protein coding gene predicted gene 11096