Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:80179632-81766816

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obrq15 17 57227447 to 80578347 23350900 QTL obesity resistance QTL 15
Galm 17 80127457 to 80185032 57575 + protein coding gene galactose mutarotase
Tssr145951 17 80184017 to 80184026 9 + TSS region transcription start site region 145951
Gm25706 17 80196158 to 80196404 246 - unclassified non-coding RNA gene predicted gene, 25706
Srsf7 17 80200080 to 80207307 7227 - protein coding gene serine/arginine-rich splicing factor 7
Cpgi9530 17 80206195 to 80207657 1462 CpG island CpG island 9530
Tssr149482 17 80207299 to 80207308 9 - TSS region transcription start site region 149482
Tssr145952 17 80207466 to 80207517 51 + TSS region transcription start site region 145952
Tssr145953 17 80207521 to 80207543 22 + TSS region transcription start site region 145953
Ttc39d 17 80215914 to 80217936 2022 + protein coding gene tetratricopeptide repeat domain 39D
Cpgi9531 17 80224399 to 80224716 317 CpG island CpG island 9531
Gemin6 17 80224441 to 80228497 4056 + protein coding gene gem nuclear organelle associated protein 6
Tssr145954 17 80224447 to 80224493 46 + TSS region transcription start site region 145954
Tssr145955 17 80224495 to 80224510 15 + TSS region transcription start site region 145955
Tssr145956 17 80224516 to 80224525 9 + TSS region transcription start site region 145956
Tssr145957 17 80224533 to 80224550 17 + TSS region transcription start site region 145957
Tssr145958 17 80232744 to 80232748 4 + TSS region transcription start site region 145958
Dhx57 17 80238309 to 80290476 52167 - protein coding gene DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
Gm50087 17 80247102 to 80250685 3583 + antisense lncRNA gene predicted gene, 50087
Tssr149483 17 80253286 to 80253291 5 - TSS region transcription start site region 149483
Tssr145959 17 80254694 to 80254706 12 + TSS region transcription start site region 145959
Tssr149484 17 80260463 to 80260466 3 - TSS region transcription start site region 149484
Cpgi9532 17 80289791 to 80290518 727 CpG island CpG island 9532
Tssr149485 17 80289804 to 80289820 16 - TSS region transcription start site region 149485
Tssr149486 17 80290066 to 80290183 117 - TSS region transcription start site region 149486
Morn2 17 80290203 to 80297476 7273 + protein coding gene MORN repeat containing 2
Tssr145960 17 80290206 to 80290279 73 + TSS region transcription start site region 145960
Tssr145961 17 80307301 to 80307306 5 + TSS region transcription start site region 145961
Tssr145962 17 80307317 to 80307327 10 + TSS region transcription start site region 145962
Tssr145963 17 80307383 to 80307394 11 + TSS region transcription start site region 145963
Tssr145964 17 80307396 to 80307413 17 + TSS region transcription start site region 145964
Arhgef33 17 80307407 to 80400081 92674 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 33
Tssr145965 17 80307459 to 80307469 10 + TSS region transcription start site region 145965
Cpgi9533 17 80372833 to 80374259 1426 CpG island CpG island 9533
Gm10190 17 80373218 to 80373541 323 - unclassified gene predicted gene 10190
Tssr149487 17 80373221 to 80373232 11 - TSS region transcription start site region 149487
Tssr145966 17 80373610 to 80373644 34 + TSS region transcription start site region 145966
Tssr145967 17 80373665 to 80373701 36 + TSS region transcription start site region 145967
Cpgi9534 17 80391706 to 80391996 290 CpG island CpG island 9534
Sos1 17 80393752 to 80480453 86701 - protein coding gene SOS Ras/Rac guanine nucleotide exchange factor 1
Tssr149488 17 80424777 to 80424781 4 - TSS region transcription start site region 149488
Gm18141 17 80444627 to 80445192 565 + pseudogene predicted gene, 18141
Tssr149489 17 80450631 to 80450641 10 - TSS region transcription start site region 149489
Gm18650 17 80463104 to 80463873 769 + pseudogene predicted gene, 18650
D17Mit128 17 80472654 to 80472799 145 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 128
D17Mit128.3 17 80472775 to 80472884 109 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 128.3
Cpgi9535 17 80479291 to 80480728 1437 CpG island CpG island 9535
Tssr145968 17 80479390 to 80479434 44 + TSS region transcription start site region 145968
Tssr149490 17 80480414 to 80480434 20 - TSS region transcription start site region 149490
Tssr149491 17 80480435 to 80480462 27 - TSS region transcription start site region 149491
Tssr149492 17 80480463 to 80480474 11 - TSS region transcription start site region 149492
Tssr149493 17 80480478 to 80480487 9 - TSS region transcription start site region 149493
Cpgi9536 17 80482787 to 80483361 574 CpG island CpG island 9536
Cdkl4 17 80523550 to 80577813 54263 - protein coding gene cyclin-dependent kinase-like 4
Cpgi9537 17 80543543 to 80543813 270 CpG island CpG island 9537
Cpgi9538 17 80550276 to 80550528 252 CpG island CpG island 9538
Gm33373 17 80553464 to 80563942 10478 + lncRNA gene predicted gene, 33373
Cpgi9539 17 80553647 to 80554091 444 CpG island CpG island 9539
F420015M19Rik 17 80564011 to 80568111 4100 + protein coding gene RIKEN cDNA F420015M19 gene
Tssr149494 17 80564712 to 80564717 5 - TSS region transcription start site region 149494
Cpgi9540 17 80576966 to 80577622 656 CpG island CpG island 9540
Tssr149495 17 80577392 to 80577403 11 - TSS region transcription start site region 149495
Tssr149496 17 80577410 to 80577439 29 - TSS region transcription start site region 149496
Tssr149497 17 80577743 to 80577752 9 - TSS region transcription start site region 149497
Tssr149498 17 80577768 to 80577783 15 - TSS region transcription start site region 149498
D17Mit2 17 80578119 to 80578347 228 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 2
Aliq3 17 80578119 to 80578347 228 QTL acute lung injury QTL 3
Map4k3 17 80580513 to 80728205 147692 - protein coding gene mitogen-activated protein kinase kinase kinase kinase 3
Tssr149499 17 80598447 to 80598453 6 - TSS region transcription start site region 149499
Tssr149500 17 80641242 to 80641243 1 - TSS region transcription start site region 149500
Tssr149501 17 80670943 to 80670953 10 - TSS region transcription start site region 149501
Tssr149502 17 80680045 to 80680054 9 - TSS region transcription start site region 149502
Tssr149503 17 80700751 to 80700779 28 - TSS region transcription start site region 149503
Tssr149504 17 80702007 to 80702020 13 - TSS region transcription start site region 149504
Cpgi9541 17 80709965 to 80710195 230 CpG island CpG island 9541
Tssr149505 17 80726610 to 80726615 5 - TSS region transcription start site region 149505
Cpgi9542 17 80727373 to 80728790 1417 CpG island CpG island 9542
Tssr149506 17 80727996 to 80728019 23 - TSS region transcription start site region 149506
Tssr149507 17 80728026 to 80728061 35 - TSS region transcription start site region 149507
Tssr149508 17 80728130 to 80728171 41 - TSS region transcription start site region 149508
Gm9959 17 80728131 to 80728522 391 + pseudogene predicted gene 9959
Tssr145969 17 80762844 to 80762857 13 + TSS region transcription start site region 145969
Tssr145970 17 80762893 to 80762904 11 + TSS region transcription start site region 145970
Gm33538 17 80783791 to 80785261 1470 - lncRNA gene predicted gene, 33538
Tssr149509 17 80801007 to 80801043 36 - TSS region transcription start site region 149509
Gm33596 17 80807231 to 80809434 2203 - lncRNA gene predicted gene, 33596
C230072F16Rik 17 80896793 to 80933045 36252 + lincRNA gene RIKEN cDNA C230072F16 gene
Tssr145971 17 80896812 to 80896841 29 + TSS region transcription start site region 145971
Tssr145972 17 80896843 to 80896854 11 + TSS region transcription start site region 145972
D17Mit1002 17 80911787 to 80911924 137 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1002
D17Mit1002.3 17 80911937 to 80912079 142 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1002.3
Tssr149510 17 80933479 to 80933497 18 - TSS region transcription start site region 149510
Tssr149511 17 80933822 to 80933831 9 - TSS region transcription start site region 149511
Gm9386 17 80938346 to 80938714 368 - pseudogene predicted pseudogene 9386
Tssr145973 17 80943826 to 80943857 31 + TSS region transcription start site region 145973
Tssr145974 17 80943981 to 80944004 23 + TSS region transcription start site region 145974
Cpgi9543 17 80944118 to 80945248 1130 CpG island CpG island 9543
Tssr145975 17 80944611 to 80944644 33 + TSS region transcription start site region 145975
Tmem178 17 80944632 to 81001816 57184 + protein coding gene transmembrane protein 178
Tssr145976 17 80944650 to 80944671 21 + TSS region transcription start site region 145976
D17Mit258 17 80946564 to 80946677 113 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 258
Tssr145977 17 80996093 to 80996097 4 + TSS region transcription start site region 145977
Tssr145978 17 80997895 to 80997899 4 + TSS region transcription start site region 145978
Thumpd2 17 81026332 to 81065082 38750 - protein coding gene THUMP domain containing 2
Tssr145979 17 81046981 to 81046996 15 + TSS region transcription start site region 145979
Cpgi9544 17 81064786 to 81065268 482 CpG island CpG island 9544
Tssr149512 17 81065056 to 81065099 43 - TSS region transcription start site region 149512
D17Mit1008 17 81228217 to 81228388 171 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1008
Gm50042 17 81246360 to 81246738 378 - pseudogene predicted gene, 50042
Gm33944 17 81284954 to 81317615 32661 + lncRNA gene predicted gene, 33944
Gm50043 17 81297300 to 81297744 444 - pseudogene predicted gene, 50043
Gm34070 17 81335857 to 81353337 17480 + lncRNA gene predicted gene, 34070
Gm41627 17 81354217 to 81359061 4844 + lncRNA gene predicted gene, 41627
Gm50044 17 81370833 to 81376294 5461 + antisense lncRNA gene predicted gene, 50044
Slc8a1 17 81373105 to 81738377 365272 - protein coding gene solute carrier family 8 (sodium/calcium exchanger), member 1
Tssr149513 17 81375434 to 81375446 12 - TSS region transcription start site region 149513
Tssr149514 17 81375452 to 81375464 12 - TSS region transcription start site region 149514
Tssr5210 17 81375483 to 81375498 15 - TSS region transcription start site region 5210
Tssr149515 17 81375521 to 81375534 13 - TSS region transcription start site region 149515
Tssr149516 17 81375884 to 81375901 17 - TSS region transcription start site region 149516
Tssr149517 17 81375984 to 81375999 15 - TSS region transcription start site region 149517
Tssr149518 17 81376084 to 81376094 10 - TSS region transcription start site region 149518
Tssr149519 17 81378918 to 81378936 18 - TSS region transcription start site region 149519
Tssr149520 17 81378942 to 81378954 12 - TSS region transcription start site region 149520
Tssr149521 17 81379046 to 81379060 14 - TSS region transcription start site region 149521
Tssr149522 17 81379108 to 81379122 14 - TSS region transcription start site region 149522
Tssr149523 17 81380645 to 81380676 31 - TSS region transcription start site region 149523
Tssr149524 17 81385435 to 81385440 5 - TSS region transcription start site region 149524
Tssr149525 17 81388273 to 81388276 3 - TSS region transcription start site region 149525
Tssr149526 17 81388326 to 81388341 15 - TSS region transcription start site region 149526
Tssr149527 17 81419859 to 81419863 4 - TSS region transcription start site region 149527
2900042E19Rik 17 81438505 to 81439855 1350 unclassified gene RIKEN cDNA 2900042E19 gene
Gm11096 17 81441763 to 81441923 160 + protein coding gene predicted gene 11096
Tssr149528 17 81465635 to 81465638 3 - TSS region transcription start site region 149528
Tssr149529 17 81471282 to 81471294 12 - TSS region transcription start site region 149529
Tssr149530 17 81473543 to 81473552 9 - TSS region transcription start site region 149530
Tssr149531 17 81481490 to 81481495 5 - TSS region transcription start site region 149531
Tssr149532 17 81493445 to 81493457 12 - TSS region transcription start site region 149532
Tssr149533 17 81498497 to 81498509 12 - TSS region transcription start site region 149533
Tssr149534 17 81498763 to 81498811 48 - TSS region transcription start site region 149534
Tssr149535 17 81499060 to 81499065 5 - TSS region transcription start site region 149535
D17Mit243 17 81507422 to 81507517 95 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 243
Tssr149536 17 81512909 to 81512923 14 - TSS region transcription start site region 149536
Tssr149537 17 81512931 to 81512945 14 - TSS region transcription start site region 149537
Tssr149538 17 81513058 to 81513071 13 - TSS region transcription start site region 149538
Tssr149539 17 81513093 to 81513105 12 - TSS region transcription start site region 149539
Tssr149540 17 81520183 to 81520187 4 - TSS region transcription start site region 149540
Tssr149541 17 81520520 to 81520558 38 - TSS region transcription start site region 149541
Tssr149542 17 81561953 to 81561959 6 - TSS region transcription start site region 149542
Tssr149543 17 81568701 to 81568706 5 - TSS region transcription start site region 149543
Tssr149544 17 81580625 to 81580627 2 - TSS region transcription start site region 149544
Tssr149545 17 81582136 to 81582153 17 - TSS region transcription start site region 149545
Tssr149546 17 81582166 to 81582184 18 - TSS region transcription start site region 149546
Tssr149547 17 81582237 to 81582251 14 - TSS region transcription start site region 149547
Tssr149548 17 81582635 to 81582646 11 - TSS region transcription start site region 149548
Tssr149549 17 81598272 to 81598280 8 - TSS region transcription start site region 149549
Tssr149550 17 81601215 to 81601219 4 - TSS region transcription start site region 149550
D330045E12Rik 17 81604173 to 81606155 1982 unclassified gene RIKEN cDNA D330045E12 gene
Tssr149551 17 81604267 to 81604286 19 - TSS region transcription start site region 149551
Tssr149552 17 81606122 to 81606126 4 - TSS region transcription start site region 149552
Tssr149553 17 81620462 to 81620466 4 - TSS region transcription start site region 149553
Tssr149554 17 81622462 to 81622465 3 - TSS region transcription start site region 149554
Tssr149555 17 81625150 to 81625153 3 - TSS region transcription start site region 149555
Tssr149556 17 81627735 to 81627756 21 - TSS region transcription start site region 149556
Tssr149557 17 81627877 to 81627888 11 - TSS region transcription start site region 149557
Tssr149558 17 81627897 to 81627925 28 - TSS region transcription start site region 149558
Tssr149559 17 81629024 to 81629028 4 - TSS region transcription start site region 149559
Tssr149560 17 81629352 to 81629357 5 - TSS region transcription start site region 149560
Tssr149561 17 81647854 to 81647865 11 - TSS region transcription start site region 149561
Tssr149562 17 81648846 to 81648857 11 - TSS region transcription start site region 149562
Cpgi9545 17 81669459 to 81670754 1295 CpG island CpG island 9545
Tssr149563 17 81670123 to 81670134 11 - TSS region transcription start site region 149563
Tssr149564 17 81670145 to 81670158 13 - TSS region transcription start site region 149564
Tssr149565 17 81670161 to 81670261 100 - TSS region transcription start site region 149565
Tssr149566 17 81671658 to 81671672 14 - TSS region transcription start site region 149566
9530032E18Rik 17 81682170 to 81682982 812 unclassified gene RIKEN cDNA 9530032E18 gene
Tssr149567 17 81697686 to 81697690 4 - TSS region transcription start site region 149567
Gm34131 17 81704105 to 81742507 38402 + lncRNA gene predicted gene, 34131
Tssr149568 17 81704782 to 81704810 28 - TSS region transcription start site region 149568
Tssr149569 17 81704874 to 81704899 25 - TSS region transcription start site region 149569
Tssr145980 17 81705120 to 81705146 26 + TSS region transcription start site region 145980
Tssr149570 17 81707599 to 81707600 1 - TSS region transcription start site region 149570
Tssr149571 17 81712907 to 81712913 6 - TSS region transcription start site region 149571
Tssr149572 17 81713026 to 81713037 11 - TSS region transcription start site region 149572
Tssr149573 17 81725591 to 81725595 4 - TSS region transcription start site region 149573
Tssr149574 17 81730885 to 81730892 7 - TSS region transcription start site region 149574
Tssr149575 17 81730905 to 81730923 18 - TSS region transcription start site region 149575
Tssr149576 17 81730925 to 81730943 18 - TSS region transcription start site region 149576
Tssr149577 17 81730986 to 81730995 9 - TSS region transcription start site region 149577
Tssr149578 17 81731115 to 81731126 11 - TSS region transcription start site region 149578
Tssr149579 17 81731249 to 81731261 12 - TSS region transcription start site region 149579
Tssr149580 17 81731275 to 81731284 9 - TSS region transcription start site region 149580
Tssr149581 17 81731431 to 81731440 9 - TSS region transcription start site region 149581
Tssr149582 17 81731515 to 81731527 12 - TSS region transcription start site region 149582
Tssr149583 17 81732972 to 81732975 3 - TSS region transcription start site region 149583
Tssr149584 17 81738355 to 81738366 11 - TSS region transcription start site region 149584
Tssr149585 17 81738371 to 81738400 29 - TSS region transcription start site region 149585
Tssr5211 17 81738416 to 81738462 46 - TSS region transcription start site region 5211