Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:80028550-81072813

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obrq15 17 57227447 to 80578347 23350900 QTL obesity resistance QTL 15
Tssr149470 17 80029232 to 80029236 4 - TSS region transcription start site region 149470
Hnrnpll 17 80029487 to 80062334 32847 - protein coding gene heterogeneous nuclear ribonucleoprotein L-like
Gm22215 17 80033514 to 80033609 95 + snRNA gene predicted gene, 22215
Tssr149471 17 80053362 to 80053368 6 - TSS region transcription start site region 149471
Cpgi9527 17 80054023 to 80054184 161 CpG island CpG island 9527
Gpx4-ps1 17 80054026 to 80054556 530 + pseudogene glutathione peroxidase 4, pseudogene 1
Tssr149472 17 80055369 to 80055378 9 - TSS region transcription start site region 149472
Tssr149473 17 80060999 to 80061011 12 - TSS region transcription start site region 149473
Cpgi9528 17 80061062 to 80062892 1830 CpG island CpG island 9528
Tssr145938 17 80061424 to 80061484 60 + TSS region transcription start site region 145938
Tssr145939 17 80061552 to 80061558 6 + TSS region transcription start site region 145939
Tssr149474 17 80062075 to 80062086 11 - TSS region transcription start site region 149474
Tssr149475 17 80062117 to 80062143 26 - TSS region transcription start site region 149475
Tssr149476 17 80062175 to 80062189 14 - TSS region transcription start site region 149476
Tssr149477 17 80062199 to 80062247 48 - TSS region transcription start site region 149477
4933407O12Rik 17 80062222 to 80063462 1240 + protein coding gene RIKEN cDNA 4933407O12 gene
Tssr149478 17 80062304 to 80062329 25 - TSS region transcription start site region 149478
Tssr149479 17 80062333 to 80062363 30 - TSS region transcription start site region 149479
Tssr145940 17 80062479 to 80062518 39 + TSS region transcription start site region 145940
Tssr145941 17 80062532 to 80062555 23 + TSS region transcription start site region 145941
Tssr149480 17 80062576 to 80062585 9 - TSS region transcription start site region 149480
Gm41626 17 80076355 to 80096903 20548 - lncRNA gene predicted gene, 41626
Tssr145942 17 80095493 to 80095501 8 + TSS region transcription start site region 145942
Cpgi9529 17 80096089 to 80096388 299 CpG island CpG island 9529
Gm23125 17 80104937 to 80105042 105 + snRNA gene predicted gene, 23125
Tssr145943 17 80113100 to 80113111 11 + TSS region transcription start site region 145943
Tssr145944 17 80119222 to 80119238 16 + TSS region transcription start site region 145944
Tssr145945 17 80127447 to 80127477 30 + TSS region transcription start site region 145945
Galm 17 80127457 to 80185032 57575 + protein coding gene galactose mutarotase
Tssr145946 17 80127641 to 80127684 43 + TSS region transcription start site region 145946
Tssr145947 17 80127699 to 80127710 11 + TSS region transcription start site region 145947
Tssr145948 17 80127777 to 80127824 47 + TSS region transcription start site region 145948
Tssr145949 17 80127871 to 80127874 3 + TSS region transcription start site region 145949
Tssr145950 17 80148249 to 80148263 14 + TSS region transcription start site region 145950
Tssr149481 17 80173808 to 80173815 7 - TSS region transcription start site region 149481
Tssr145951 17 80184017 to 80184026 9 + TSS region transcription start site region 145951
Gm25706 17 80196158 to 80196404 246 - unclassified non-coding RNA gene predicted gene, 25706
Srsf7 17 80200080 to 80207307 7227 - protein coding gene serine/arginine-rich splicing factor 7
Cpgi9530 17 80206195 to 80207657 1462 CpG island CpG island 9530
Tssr149482 17 80207299 to 80207308 9 - TSS region transcription start site region 149482
Tssr145952 17 80207466 to 80207517 51 + TSS region transcription start site region 145952
Tssr145953 17 80207521 to 80207543 22 + TSS region transcription start site region 145953
Ttc39d 17 80215914 to 80217936 2022 + protein coding gene tetratricopeptide repeat domain 39D
Cpgi9531 17 80224399 to 80224716 317 CpG island CpG island 9531
Gemin6 17 80224441 to 80228497 4056 + protein coding gene gem nuclear organelle associated protein 6
Tssr145954 17 80224447 to 80224493 46 + TSS region transcription start site region 145954
Tssr145955 17 80224495 to 80224510 15 + TSS region transcription start site region 145955
Tssr145956 17 80224516 to 80224525 9 + TSS region transcription start site region 145956
Tssr145957 17 80224533 to 80224550 17 + TSS region transcription start site region 145957
Tssr145958 17 80232744 to 80232748 4 + TSS region transcription start site region 145958
Dhx57 17 80238309 to 80290476 52167 - protein coding gene DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
Gm50087 17 80247102 to 80250685 3583 + antisense lncRNA gene predicted gene, 50087
Tssr149483 17 80253286 to 80253291 5 - TSS region transcription start site region 149483
Tssr145959 17 80254694 to 80254706 12 + TSS region transcription start site region 145959
Tssr149484 17 80260463 to 80260466 3 - TSS region transcription start site region 149484
Cpgi9532 17 80289791 to 80290518 727 CpG island CpG island 9532
Tssr149485 17 80289804 to 80289820 16 - TSS region transcription start site region 149485
Tssr149486 17 80290066 to 80290183 117 - TSS region transcription start site region 149486
Morn2 17 80290203 to 80297476 7273 + protein coding gene MORN repeat containing 2
Tssr145960 17 80290206 to 80290279 73 + TSS region transcription start site region 145960
Tssr145961 17 80307301 to 80307306 5 + TSS region transcription start site region 145961
Tssr145962 17 80307317 to 80307327 10 + TSS region transcription start site region 145962
Tssr145963 17 80307383 to 80307394 11 + TSS region transcription start site region 145963
Tssr145964 17 80307396 to 80307413 17 + TSS region transcription start site region 145964
Arhgef33 17 80307407 to 80400081 92674 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 33
Tssr145965 17 80307459 to 80307469 10 + TSS region transcription start site region 145965
Cpgi9533 17 80372833 to 80374259 1426 CpG island CpG island 9533
Gm10190 17 80373218 to 80373541 323 - unclassified gene predicted gene 10190
Tssr149487 17 80373221 to 80373232 11 - TSS region transcription start site region 149487
Tssr145966 17 80373610 to 80373644 34 + TSS region transcription start site region 145966
Tssr145967 17 80373665 to 80373701 36 + TSS region transcription start site region 145967
Cpgi9534 17 80391706 to 80391996 290 CpG island CpG island 9534
Sos1 17 80393752 to 80480453 86701 - protein coding gene SOS Ras/Rac guanine nucleotide exchange factor 1
Tssr149488 17 80424777 to 80424781 4 - TSS region transcription start site region 149488
Gm18141 17 80444627 to 80445192 565 + pseudogene predicted gene, 18141
Tssr149489 17 80450631 to 80450641 10 - TSS region transcription start site region 149489
Gm18650 17 80463104 to 80463873 769 + pseudogene predicted gene, 18650
D17Mit128 17 80472654 to 80472799 145 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 128
D17Mit128.3 17 80472775 to 80472884 109 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 128.3
Cpgi9535 17 80479291 to 80480728 1437 CpG island CpG island 9535
Tssr145968 17 80479390 to 80479434 44 + TSS region transcription start site region 145968
Tssr149490 17 80480414 to 80480434 20 - TSS region transcription start site region 149490
Tssr149491 17 80480435 to 80480462 27 - TSS region transcription start site region 149491
Tssr149492 17 80480463 to 80480474 11 - TSS region transcription start site region 149492
Tssr149493 17 80480478 to 80480487 9 - TSS region transcription start site region 149493
Cpgi9536 17 80482787 to 80483361 574 CpG island CpG island 9536
Cdkl4 17 80523550 to 80577813 54263 - protein coding gene cyclin-dependent kinase-like 4
Cpgi9537 17 80543543 to 80543813 270 CpG island CpG island 9537
Cpgi9538 17 80550276 to 80550528 252 CpG island CpG island 9538
Gm33373 17 80553464 to 80563942 10478 + lncRNA gene predicted gene, 33373
Cpgi9539 17 80553647 to 80554091 444 CpG island CpG island 9539
F420015M19Rik 17 80564011 to 80568111 4100 + protein coding gene RIKEN cDNA F420015M19 gene
Tssr149494 17 80564712 to 80564717 5 - TSS region transcription start site region 149494
Cpgi9540 17 80576966 to 80577622 656 CpG island CpG island 9540
Tssr149495 17 80577392 to 80577403 11 - TSS region transcription start site region 149495
Tssr149496 17 80577410 to 80577439 29 - TSS region transcription start site region 149496
Tssr149497 17 80577743 to 80577752 9 - TSS region transcription start site region 149497
Tssr149498 17 80577768 to 80577783 15 - TSS region transcription start site region 149498
D17Mit2 17 80578119 to 80578347 228 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 2
Aliq3 17 80578119 to 80578347 228 QTL acute lung injury QTL 3
Map4k3 17 80580513 to 80728205 147692 - protein coding gene mitogen-activated protein kinase kinase kinase kinase 3
Tssr149499 17 80598447 to 80598453 6 - TSS region transcription start site region 149499
Tssr149500 17 80641242 to 80641243 1 - TSS region transcription start site region 149500
Tssr149501 17 80670943 to 80670953 10 - TSS region transcription start site region 149501
Tssr149502 17 80680045 to 80680054 9 - TSS region transcription start site region 149502
Tssr149503 17 80700751 to 80700779 28 - TSS region transcription start site region 149503
Tssr149504 17 80702007 to 80702020 13 - TSS region transcription start site region 149504
Cpgi9541 17 80709965 to 80710195 230 CpG island CpG island 9541
Tssr149505 17 80726610 to 80726615 5 - TSS region transcription start site region 149505
Cpgi9542 17 80727373 to 80728790 1417 CpG island CpG island 9542
Tssr149506 17 80727996 to 80728019 23 - TSS region transcription start site region 149506
Tssr149507 17 80728026 to 80728061 35 - TSS region transcription start site region 149507
Tssr149508 17 80728130 to 80728171 41 - TSS region transcription start site region 149508
Gm9959 17 80728131 to 80728522 391 + pseudogene predicted gene 9959
Tssr145969 17 80762844 to 80762857 13 + TSS region transcription start site region 145969
Tssr145970 17 80762893 to 80762904 11 + TSS region transcription start site region 145970
Gm33538 17 80783791 to 80785261 1470 - lncRNA gene predicted gene, 33538
Tssr149509 17 80801007 to 80801043 36 - TSS region transcription start site region 149509
Gm33596 17 80807231 to 80809434 2203 - lncRNA gene predicted gene, 33596
C230072F16Rik 17 80896793 to 80933045 36252 + lincRNA gene RIKEN cDNA C230072F16 gene
Tssr145971 17 80896812 to 80896841 29 + TSS region transcription start site region 145971
Tssr145972 17 80896843 to 80896854 11 + TSS region transcription start site region 145972
D17Mit1002 17 80911787 to 80911924 137 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1002
D17Mit1002.3 17 80911937 to 80912079 142 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1002.3
Tssr149510 17 80933479 to 80933497 18 - TSS region transcription start site region 149510
Tssr149511 17 80933822 to 80933831 9 - TSS region transcription start site region 149511
Gm9386 17 80938346 to 80938714 368 - pseudogene predicted pseudogene 9386
Tssr145973 17 80943826 to 80943857 31 + TSS region transcription start site region 145973
Tssr145974 17 80943981 to 80944004 23 + TSS region transcription start site region 145974
Cpgi9543 17 80944118 to 80945248 1130 CpG island CpG island 9543
Tssr145975 17 80944611 to 80944644 33 + TSS region transcription start site region 145975
Tmem178 17 80944632 to 81001816 57184 + protein coding gene transmembrane protein 178
Tssr145976 17 80944650 to 80944671 21 + TSS region transcription start site region 145976
D17Mit258 17 80946564 to 80946677 113 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 258
Tssr145977 17 80996093 to 80996097 4 + TSS region transcription start site region 145977
Tssr145978 17 80997895 to 80997899 4 + TSS region transcription start site region 145978
Thumpd2 17 81026332 to 81065082 38750 - protein coding gene THUMP domain containing 2
Tssr145979 17 81046981 to 81046996 15 + TSS region transcription start site region 145979
Cpgi9544 17 81064786 to 81065268 482 CpG island CpG island 9544
Tssr149512 17 81065056 to 81065099 43 - TSS region transcription start site region 149512