Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:79888100-80338111

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atl2 17 79848390 to 79896123 47733 - protein coding gene atlastin GTPase 2
Tssr149461 17 79891131 to 79891135 4 - TSS region transcription start site region 149461
Cpgi9524 17 79894813 to 79896508 1695 CpG island CpG island 9524
Tssr149462 17 79895957 to 79895966 9 - TSS region transcription start site region 149462
Tssr149463 17 79895995 to 79896019 24 - TSS region transcription start site region 149463
Tssr149464 17 79896028 to 79896061 33 - TSS region transcription start site region 149464
Tssr145933 17 79918901 to 79918920 19 + TSS region transcription start site region 145933
Gm6552 17 79933512 to 79934572 1060 - pseudogene predicted gene 6552
Cpgi9525 17 79934441 to 79934668 227 CpG island CpG island 9525
Tssr149465 17 79934587 to 79934600 13 - TSS region transcription start site region 149465
D17Mit73 17 79952498 to 79952603 105 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 73
Tssr145934 17 79955510 to 79955527 17 + TSS region transcription start site region 145934
Tssr149466 17 79973273 to 79973287 14 - TSS region transcription start site region 149466
Gm41625 17 79977353 to 79981662 4309 - lncRNA gene predicted gene, 41625
Tssr145935 17 79980628 to 79980648 20 + TSS region transcription start site region 145935
Tssr149467 17 79981613 to 79981624 11 - TSS region transcription start site region 149467
Tssr149468 17 79981628 to 79981636 8 - TSS region transcription start site region 149468
Tssr145936 17 79999876 to 79999887 11 + TSS region transcription start site region 145936
Tssr145937 17 79999906 to 79999921 15 + TSS region transcription start site region 145937
Tssr149469 17 80006264 to 80006269 5 - TSS region transcription start site region 149469
Cpgi9526 17 80019176 to 80019490 314 CpG island CpG island 9526
Tssr149470 17 80029232 to 80029236 4 - TSS region transcription start site region 149470
Hnrnpll 17 80029487 to 80062334 32847 - protein coding gene heterogeneous nuclear ribonucleoprotein L-like
Gm22215 17 80033514 to 80033609 95 + snRNA gene predicted gene, 22215
Tssr149471 17 80053362 to 80053368 6 - TSS region transcription start site region 149471
Cpgi9527 17 80054023 to 80054184 161 CpG island CpG island 9527
Gpx4-ps1 17 80054026 to 80054556 530 + pseudogene glutathione peroxidase 4, pseudogene 1
Tssr149472 17 80055369 to 80055378 9 - TSS region transcription start site region 149472
Tssr149473 17 80060999 to 80061011 12 - TSS region transcription start site region 149473
Cpgi9528 17 80061062 to 80062892 1830 CpG island CpG island 9528
Tssr145938 17 80061424 to 80061484 60 + TSS region transcription start site region 145938
Tssr145939 17 80061552 to 80061558 6 + TSS region transcription start site region 145939
Tssr149474 17 80062075 to 80062086 11 - TSS region transcription start site region 149474
Tssr149475 17 80062117 to 80062143 26 - TSS region transcription start site region 149475
Tssr149476 17 80062175 to 80062189 14 - TSS region transcription start site region 149476
Tssr149477 17 80062199 to 80062247 48 - TSS region transcription start site region 149477
4933407O12Rik 17 80062222 to 80063462 1240 + protein coding gene RIKEN cDNA 4933407O12 gene
Tssr149478 17 80062304 to 80062329 25 - TSS region transcription start site region 149478
Tssr149479 17 80062333 to 80062363 30 - TSS region transcription start site region 149479
Tssr145940 17 80062479 to 80062518 39 + TSS region transcription start site region 145940
Tssr145941 17 80062532 to 80062555 23 + TSS region transcription start site region 145941
Tssr149480 17 80062576 to 80062585 9 - TSS region transcription start site region 149480
Gm41626 17 80076355 to 80096903 20548 - lncRNA gene predicted gene, 41626
Tssr145942 17 80095493 to 80095501 8 + TSS region transcription start site region 145942
Cpgi9529 17 80096089 to 80096388 299 CpG island CpG island 9529
Gm23125 17 80104937 to 80105042 105 + snRNA gene predicted gene, 23125
Tssr145943 17 80113100 to 80113111 11 + TSS region transcription start site region 145943
Tssr145944 17 80119222 to 80119238 16 + TSS region transcription start site region 145944
Tssr145945 17 80127447 to 80127477 30 + TSS region transcription start site region 145945
Galm 17 80127457 to 80185032 57575 + protein coding gene galactose mutarotase
Tssr145946 17 80127641 to 80127684 43 + TSS region transcription start site region 145946
Tssr145947 17 80127699 to 80127710 11 + TSS region transcription start site region 145947
Tssr145948 17 80127777 to 80127824 47 + TSS region transcription start site region 145948
Tssr145949 17 80127871 to 80127874 3 + TSS region transcription start site region 145949
Tssr145950 17 80148249 to 80148263 14 + TSS region transcription start site region 145950
Tssr149481 17 80173808 to 80173815 7 - TSS region transcription start site region 149481
Tssr145951 17 80184017 to 80184026 9 + TSS region transcription start site region 145951
Gm25706 17 80196158 to 80196404 246 - unclassified non-coding RNA gene predicted gene, 25706
Srsf7 17 80200080 to 80207307 7227 - protein coding gene serine/arginine-rich splicing factor 7
Cpgi9530 17 80206195 to 80207657 1462 CpG island CpG island 9530
Tssr149482 17 80207299 to 80207308 9 - TSS region transcription start site region 149482
Tssr145952 17 80207466 to 80207517 51 + TSS region transcription start site region 145952
Tssr145953 17 80207521 to 80207543 22 + TSS region transcription start site region 145953
Ttc39d 17 80215914 to 80217936 2022 + protein coding gene tetratricopeptide repeat domain 39D
Cpgi9531 17 80224399 to 80224716 317 CpG island CpG island 9531
Gemin6 17 80224441 to 80228497 4056 + protein coding gene gem nuclear organelle associated protein 6
Tssr145954 17 80224447 to 80224493 46 + TSS region transcription start site region 145954
Tssr145955 17 80224495 to 80224510 15 + TSS region transcription start site region 145955
Tssr145956 17 80224516 to 80224525 9 + TSS region transcription start site region 145956
Tssr145957 17 80224533 to 80224550 17 + TSS region transcription start site region 145957
Tssr145958 17 80232744 to 80232748 4 + TSS region transcription start site region 145958
Dhx57 17 80238309 to 80290476 52167 - protein coding gene DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
Gm50087 17 80247102 to 80250685 3583 + antisense lncRNA gene predicted gene, 50087
Tssr149483 17 80253286 to 80253291 5 - TSS region transcription start site region 149483
Tssr145959 17 80254694 to 80254706 12 + TSS region transcription start site region 145959
Tssr149484 17 80260463 to 80260466 3 - TSS region transcription start site region 149484
Cpgi9532 17 80289791 to 80290518 727 CpG island CpG island 9532
Tssr149485 17 80289804 to 80289820 16 - TSS region transcription start site region 149485
Tssr149486 17 80290066 to 80290183 117 - TSS region transcription start site region 149486
Morn2 17 80290203 to 80297476 7273 + protein coding gene MORN repeat containing 2
Tssr145960 17 80290206 to 80290279 73 + TSS region transcription start site region 145960
Tssr145961 17 80307301 to 80307306 5 + TSS region transcription start site region 145961
Tssr145962 17 80307317 to 80307327 10 + TSS region transcription start site region 145962
Tssr145963 17 80307383 to 80307394 11 + TSS region transcription start site region 145963
Tssr145964 17 80307396 to 80307413 17 + TSS region transcription start site region 145964
Arhgef33 17 80307407 to 80400081 92674 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 33
Tssr145965 17 80307459 to 80307469 10 + TSS region transcription start site region 145965