Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:79230516-80000542

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D17Mit187 17 79232122 to 79232368 246 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 187
Gm5230 17 79257410 to 79258049 639 - pseudogene predicted gene 5230
D17Mit42 17 79316511 to 79316665 154 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 42
Cdc42ep3 17 79333727 to 79355091 21364 - protein coding gene CDC42 effector protein (Rho GTPase binding) 3
Cpgi9517 17 79345361 to 79345712 351 CpG island CpG island 9517
Cpgi9518 17 79354245 to 79356253 2008 CpG island CpG island 9518
Gm17315 17 79354699 to 79358022 3323 + lincRNA gene predicted gene, 17315
Tssr149434 17 79354860 to 79354864 4 - TSS region transcription start site region 149434
Tssr149435 17 79354868 to 79354875 7 - TSS region transcription start site region 149435
Tssr149436 17 79354882 to 79354937 55 - TSS region transcription start site region 149436
Tssr149437 17 79354943 to 79354949 6 - TSS region transcription start site region 149437
Tssr149438 17 79354989 to 79355000 11 - TSS region transcription start site region 149438
Tssr149439 17 79355048 to 79355073 25 - TSS region transcription start site region 149439
Tssr149440 17 79355082 to 79355103 21 - TSS region transcription start site region 149440
Tssr149441 17 79355623 to 79355708 85 - TSS region transcription start site region 149441
Tssr149442 17 79355748 to 79355786 38 - TSS region transcription start site region 149442
Gm32954 17 79437919 to 79451714 13795 - lncRNA gene predicted gene, 32954
Tssr149443 17 79451635 to 79451644 9 - TSS region transcription start site region 149443
Tssr149444 17 79451649 to 79451664 15 - TSS region transcription start site region 149444
Tssr149445 17 79451714 to 79451726 12 - TSS region transcription start site region 149445
Tssr149446 17 79462588 to 79462589 1 - TSS region transcription start site region 149446
4930429F11Rik 17 79475624 to 79477885 2261 - lncRNA gene RIKEN cDNA 4930429F11 gene
Gm10494 17 79506049 to 79510486 4437 - lncRNA gene predicted gene 10494
Gm41623 17 79569915 to 79615433 45518 - lncRNA gene predicted gene, 41623
Gm7283 17 79572658 to 79573035 377 + pseudogene predicted gene 7283
Tssr145917 17 79611781 to 79611788 7 + TSS region transcription start site region 145917
Tssr145918 17 79611838 to 79611858 20 + TSS region transcription start site region 145918
Rmdn2 17 79611863 to 79693192 81329 + protein coding gene regulator of microtubule dynamics 2
Cpgi9519 17 79614815 to 79615687 872 CpG island CpG island 9519
Tssr145919 17 79615033 to 79615043 10 + TSS region transcription start site region 145919
Tssr145920 17 79615058 to 79615071 13 + TSS region transcription start site region 145920
Tssr145921 17 79615192 to 79615203 11 + TSS region transcription start site region 145921
Tssr145922 17 79615208 to 79615231 23 + TSS region transcription start site region 145922
Tssr145923 17 79615236 to 79615252 16 + TSS region transcription start site region 145923
Tssr145924 17 79615255 to 79615296 41 + TSS region transcription start site region 145924
Tssr149447 17 79615446 to 79615487 41 - TSS region transcription start site region 149447
Tssr145925 17 79615516 to 79615542 26 + TSS region transcription start site region 145925
Tssr145926 17 79616862 to 79616873 11 + TSS region transcription start site region 145926
Tssr145927 17 79622813 to 79622823 10 + TSS region transcription start site region 145927
Tssr145928 17 79626653 to 79626656 3 + TSS region transcription start site region 145928
Tssr145929 17 79626669 to 79626697 28 + TSS region transcription start site region 145929
Tssr145930 17 79650300 to 79650304 4 + TSS region transcription start site region 145930
Gm33006 17 79651811 to 79667756 15945 - lncRNA gene predicted gene, 33006
Tssr145931 17 79653376 to 79653390 14 + TSS region transcription start site region 145931
Cpgi9520 17 79667653 to 79667814 161 CpG island CpG island 9520
Cyp1b1 17 79701537 to 79715061 13524 - protein coding gene cytochrome P450, family 1, subfamily b, polypeptide 1
Tssr149448 17 79707499 to 79707519 20 - TSS region transcription start site region 149448
Tssr149449 17 79707645 to 79707659 14 - TSS region transcription start site region 149449
Cpgi9521 17 79713169 to 79714704 1535 CpG island CpG island 9521
1700038P13Rik 17 79713271 to 79716983 3712 unclassified gene RIKEN cDNA 1700038P13 gene
Tssr149450 17 79713628 to 79713662 34 - TSS region transcription start site region 149450
Tssr149451 17 79713681 to 79713700 19 - TSS region transcription start site region 149451
Tssr149452 17 79713705 to 79713725 20 - TSS region transcription start site region 149452
Tssr149453 17 79714091 to 79714107 16 - TSS region transcription start site region 149453
Tssr149454 17 79714712 to 79714747 35 - TSS region transcription start site region 149454
Tssr149455 17 79714981 to 79714990 9 - TSS region transcription start site region 149455
Tssr149456 17 79715034 to 79715047 13 - TSS region transcription start site region 149456
Tssr149457 17 79715051 to 79715103 52 - TSS region transcription start site region 149457
Cpgi9522 17 79715096 to 79715286 190 CpG island CpG island 9522
Cpgi9523 17 79715618 to 79716259 641 CpG island CpG island 9523
Gm41624 17 79723832 to 79728823 4991 - lncRNA gene predicted gene, 41624
Gm33055 17 79737380 to 79745047 7667 + lncRNA gene predicted gene, 33055
Tssr145932 17 79737408 to 79737419 11 + TSS region transcription start site region 145932
D17Mit74 17 79742450 to 79742602 152 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 74
Gm49984 17 79771962 to 79775058 3096 + lincRNA gene predicted gene, 49984
Gm37555 17 79810308 to 79825414 15106 - unclassified gene predicted gene, 37555
1700106O07Rik 17 79811714 to 79813691 1977 unclassified gene RIKEN cDNA 1700106O07 gene
Gm49985 17 79825859 to 79826893 1034 + lincRNA gene predicted gene, 49985
Atl2 17 79848390 to 79896123 47733 - protein coding gene atlastin GTPase 2
Tssr149458 17 79857343 to 79857346 3 - TSS region transcription start site region 149458
Tssr149459 17 79871932 to 79871943 11 - TSS region transcription start site region 149459
Tssr149460 17 79882347 to 79882354 7 - TSS region transcription start site region 149460
Tssr149461 17 79891131 to 79891135 4 - TSS region transcription start site region 149461
Cpgi9524 17 79894813 to 79896508 1695 CpG island CpG island 9524
Tssr149462 17 79895957 to 79895966 9 - TSS region transcription start site region 149462
Tssr149463 17 79895995 to 79896019 24 - TSS region transcription start site region 149463
Tssr149464 17 79896028 to 79896061 33 - TSS region transcription start site region 149464
Tssr145933 17 79918901 to 79918920 19 + TSS region transcription start site region 145933
Gm6552 17 79933512 to 79934572 1060 - pseudogene predicted gene 6552
Cpgi9525 17 79934441 to 79934668 227 CpG island CpG island 9525
Tssr149465 17 79934587 to 79934600 13 - TSS region transcription start site region 149465
D17Mit73 17 79952498 to 79952603 105 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 73
Tssr145934 17 79955510 to 79955527 17 + TSS region transcription start site region 145934
Tssr149466 17 79973273 to 79973287 14 - TSS region transcription start site region 149466
Gm41625 17 79977353 to 79981662 4309 - lncRNA gene predicted gene, 41625
Tssr145935 17 79980628 to 79980648 20 + TSS region transcription start site region 145935
Tssr149467 17 79981613 to 79981624 11 - TSS region transcription start site region 149467
Tssr149468 17 79981628 to 79981636 8 - TSS region transcription start site region 149468
Tssr145936 17 79999876 to 79999887 11 + TSS region transcription start site region 145936
Tssr145937 17 79999906 to 79999921 15 + TSS region transcription start site region 145937