Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:78844165-79424166

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gpatch11 17 78835567 to 78848308 12741 + protein coding gene G patch domain containing 11
Gm6548 17 78850792 to 78851956 1164 - pseudogene predicted gene 6548
Eif2ak2 17 78852564 to 78882573 30009 - protein coding gene eukaryotic translation initiation factor 2-alpha kinase 2
Tssr149414 17 78853199 to 78853213 14 - TSS region transcription start site region 149414
Tssr149415 17 78855070 to 78855081 11 - TSS region transcription start site region 149415
Tssr149416 17 78856610 to 78856626 16 - TSS region transcription start site region 149416
Tssr149417 17 78858707 to 78858713 6 - TSS region transcription start site region 149417
n-R5s29 17 78858934 to 78859052 118 + rRNA gene nuclear encoded rRNA 5S 29
Tssr149418 17 78870477 to 78870491 14 - TSS region transcription start site region 149418
Cpgi9511 17 78872952 to 78873251 299 CpG island CpG island 9511
Tssr149419 17 78877265 to 78877293 28 - TSS region transcription start site region 149419
Tssr145907 17 78882003 to 78882027 24 + TSS region transcription start site region 145907
Gm26637 17 78882042 to 78892500 10458 + lincRNA gene predicted gene, 26637
Cpgi9512 17 78882435 to 78882771 336 CpG island CpG island 9512
Tssr149420 17 78882508 to 78882554 46 - TSS region transcription start site region 149420
Tssr149421 17 78882574 to 78882583 9 - TSS region transcription start site region 149421
Sult6b1 17 78883938 to 78906992 23054 - protein coding gene sulfotransferase family, cytosolic, 6B, member 1
Tssr149422 17 78895091 to 78895107 16 - TSS region transcription start site region 149422
Tssr149423 17 78895139 to 78895150 11 - TSS region transcription start site region 149423
Tssr149424 17 78915846 to 78915866 20 - TSS region transcription start site region 149424
Cpgi9513 17 78916243 to 78917125 882 CpG island CpG island 9513
Tssr145908 17 78916473 to 78916509 36 + TSS region transcription start site region 145908
Cebpzos 17 78916500 to 78920306 3806 + protein coding gene CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand
Tssr145909 17 78916518 to 78916531 13 + TSS region transcription start site region 145909
Tssr145910 17 78916533 to 78916560 27 + TSS region transcription start site region 145910
Tssr145911 17 78916641 to 78916677 36 + TSS region transcription start site region 145911
Cebpz 17 78919006 to 78937066 18060 - protein coding gene CCAAT/enhancer binding protein zeta
Tssr149425 17 78934189 to 78934194 5 - TSS region transcription start site region 149425
Cpgi9514 17 78936636 to 78937578 942 CpG island CpG island 9514
Tssr149426 17 78937031 to 78937074 43 - TSS region transcription start site region 149426
Tssr145912 17 78937124 to 78937183 59 + TSS region transcription start site region 145912
Ndufaf7 17 78937136 to 78948052 10916 + protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 7
Tssr145913 17 78937210 to 78937221 11 + TSS region transcription start site region 145913
Tssr5209 17 78937237 to 78937244 7 + TSS region transcription start site region 5209
Prkd3 17 78949405 to 79020816 71411 - protein coding gene protein kinase D3
D17Mit142 17 78965900 to 78966046 146 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 142
D17Mit142.2 17 78966101 to 78966220 119 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 142.2
Tssr149427 17 78966332 to 78966352 20 - TSS region transcription start site region 149427
Gm41622 17 78985362 to 79001693 16331 + lncRNA gene predicted gene, 41622
Tssr149428 17 78985393 to 78985400 7 - TSS region transcription start site region 149428
Tssr149429 17 78985405 to 78985426 21 - TSS region transcription start site region 149429
Tssr149430 17 78985428 to 78985468 40 - TSS region transcription start site region 149430
Tssr145914 17 78989327 to 78989338 11 + TSS region transcription start site region 145914
D17Mit72 17 78993581 to 78993773 192 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 72
Sluc32 17 78993581 to 78993773 192 QTL susceptibility to lung cancer 32
Scc4 17 78993581 to 78993773 192 QTL colon tumor susceptibility 4
Cpgi9515 17 79019939 to 79021403 1464 CpG island CpG island 9515
Tssr149431 17 79020702 to 79020710 8 - TSS region transcription start site region 149431
Tssr149432 17 79020740 to 79020803 63 - TSS region transcription start site region 149432
Tssr149433 17 79020826 to 79020859 33 - TSS region transcription start site region 149433
Gm26957 17 79041946 to 79042922 976 + pseudogene predicted gene, 26957
Qpct 17 79051906 to 79090378 38472 + protein coding gene glutaminyl-peptide cyclotransferase (glutaminyl cyclase)
Cpgi9516 17 79052033 to 79052874 841 CpG island CpG island 9516
Tssr145915 17 79052231 to 79052267 36 + TSS region transcription start site region 145915
Gm49869 17 79103278 to 79103744 466 - pseudogene predicted gene, 49869
Tssr145916 17 79134165 to 79134166 1 + TSS region transcription start site region 145916
D17Mit121 17 79203586 to 79203736 150 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 121
D17Mit187 17 79232122 to 79232368 246 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 187
Gm5230 17 79257410 to 79258049 639 - pseudogene predicted gene 5230
D17Mit42 17 79316511 to 79316665 154 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 42
Cdc42ep3 17 79333727 to 79355091 21364 - protein coding gene CDC42 effector protein (Rho GTPase binding) 3
Cpgi9517 17 79345361 to 79345712 351 CpG island CpG island 9517
Cpgi9518 17 79354245 to 79356253 2008 CpG island CpG island 9518
Gm17315 17 79354699 to 79358022 3323 + lincRNA gene predicted gene, 17315
Tssr149434 17 79354860 to 79354864 4 - TSS region transcription start site region 149434
Tssr149435 17 79354868 to 79354875 7 - TSS region transcription start site region 149435
Tssr149436 17 79354882 to 79354937 55 - TSS region transcription start site region 149436
Tssr149437 17 79354943 to 79354949 6 - TSS region transcription start site region 149437
Tssr149438 17 79354989 to 79355000 11 - TSS region transcription start site region 149438
Tssr149439 17 79355048 to 79355073 25 - TSS region transcription start site region 149439
Tssr149440 17 79355082 to 79355103 21 - TSS region transcription start site region 149440
Tssr149441 17 79355623 to 79355708 85 - TSS region transcription start site region 149441
Tssr149442 17 79355748 to 79355786 38 - TSS region transcription start site region 149442