Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:78735567-78948308

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Strn 17 78649908 to 78736914 87006 - protein coding gene striatin, calmodulin binding protein
Cpgi9509 17 78736111 to 78737198 1087 CpG island CpG island 9509
Tssr149404 17 78736510 to 78736524 14 - TSS region transcription start site region 149404
Tssr149405 17 78736534 to 78736586 52 - TSS region transcription start site region 149405
Tssr149406 17 78736606 to 78736633 27 - TSS region transcription start site region 149406
Tssr149407 17 78736636 to 78736643 7 - TSS region transcription start site region 149407
Tssr149408 17 78736651 to 78736670 19 - TSS region transcription start site region 149408
Gm49863 17 78750995 to 78751496 501 + pseudogene predicted gene, 49863
Gm18649 17 78752255 to 78752715 460 + pseudogene predicted gene, 18649
Heatr5b 17 78752898 to 78835364 82466 - protein coding gene HEAT repeat containing 5B
Tssr149409 17 78769041 to 78769053 12 - TSS region transcription start site region 149409
Tssr149410 17 78769058 to 78769076 18 - TSS region transcription start site region 149410
Tssr149411 17 78769077 to 78769101 24 - TSS region transcription start site region 149411
Tssr149412 17 78773595 to 78773604 9 - TSS region transcription start site region 149412
Cpgi9510 17 78834888 to 78835894 1006 CpG island CpG island 9510
Tssr149413 17 78835326 to 78835373 47 - TSS region transcription start site region 149413
Tssr145905 17 78835528 to 78835612 84 + TSS region transcription start site region 145905
Gpatch11 17 78835567 to 78848308 12741 + protein coding gene G patch domain containing 11
Tssr145906 17 78840959 to 78840988 29 + TSS region transcription start site region 145906
Gm6548 17 78850792 to 78851956 1164 - pseudogene predicted gene 6548
Eif2ak2 17 78852564 to 78882573 30009 - protein coding gene eukaryotic translation initiation factor 2-alpha kinase 2
Tssr149414 17 78853199 to 78853213 14 - TSS region transcription start site region 149414
Tssr149415 17 78855070 to 78855081 11 - TSS region transcription start site region 149415
Tssr149416 17 78856610 to 78856626 16 - TSS region transcription start site region 149416
Tssr149417 17 78858707 to 78858713 6 - TSS region transcription start site region 149417
n-R5s29 17 78858934 to 78859052 118 + rRNA gene nuclear encoded rRNA 5S 29
Tssr149418 17 78870477 to 78870491 14 - TSS region transcription start site region 149418
Cpgi9511 17 78872952 to 78873251 299 CpG island CpG island 9511
Tssr149419 17 78877265 to 78877293 28 - TSS region transcription start site region 149419
Tssr145907 17 78882003 to 78882027 24 + TSS region transcription start site region 145907
Gm26637 17 78882042 to 78892500 10458 + lincRNA gene predicted gene, 26637
Cpgi9512 17 78882435 to 78882771 336 CpG island CpG island 9512
Tssr149420 17 78882508 to 78882554 46 - TSS region transcription start site region 149420
Tssr149421 17 78882574 to 78882583 9 - TSS region transcription start site region 149421
Sult6b1 17 78883938 to 78906992 23054 - protein coding gene sulfotransferase family, cytosolic, 6B, member 1
Tssr149422 17 78895091 to 78895107 16 - TSS region transcription start site region 149422
Tssr149423 17 78895139 to 78895150 11 - TSS region transcription start site region 149423
Tssr149424 17 78915846 to 78915866 20 - TSS region transcription start site region 149424
Cpgi9513 17 78916243 to 78917125 882 CpG island CpG island 9513
Tssr145908 17 78916473 to 78916509 36 + TSS region transcription start site region 145908
Cebpzos 17 78916500 to 78920306 3806 + protein coding gene CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand
Tssr145909 17 78916518 to 78916531 13 + TSS region transcription start site region 145909
Tssr145910 17 78916533 to 78916560 27 + TSS region transcription start site region 145910
Tssr145911 17 78916641 to 78916677 36 + TSS region transcription start site region 145911
Cebpz 17 78919006 to 78937066 18060 - protein coding gene CCAAT/enhancer binding protein zeta
Tssr149425 17 78934189 to 78934194 5 - TSS region transcription start site region 149425
Cpgi9514 17 78936636 to 78937578 942 CpG island CpG island 9514
Tssr149426 17 78937031 to 78937074 43 - TSS region transcription start site region 149426
Tssr145912 17 78937124 to 78937183 59 + TSS region transcription start site region 145912
Ndufaf7 17 78937136 to 78948052 10916 + protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 7
Tssr145913 17 78937210 to 78937221 11 + TSS region transcription start site region 145913
Tssr5209 17 78937237 to 78937244 7 + TSS region transcription start site region 5209