Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:78690740-79350803

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Strn 17 78649908 to 78736914 87006 - protein coding gene striatin, calmodulin binding protein
Cpgi9509 17 78736111 to 78737198 1087 CpG island CpG island 9509
Tssr149404 17 78736510 to 78736524 14 - TSS region transcription start site region 149404
Tssr149405 17 78736534 to 78736586 52 - TSS region transcription start site region 149405
Tssr149406 17 78736606 to 78736633 27 - TSS region transcription start site region 149406
Tssr149407 17 78736636 to 78736643 7 - TSS region transcription start site region 149407
Tssr149408 17 78736651 to 78736670 19 - TSS region transcription start site region 149408
Gm49863 17 78750995 to 78751496 501 + pseudogene predicted gene, 49863
Gm18649 17 78752255 to 78752715 460 + pseudogene predicted gene, 18649
Heatr5b 17 78752898 to 78835364 82466 - protein coding gene HEAT repeat containing 5B
Tssr149409 17 78769041 to 78769053 12 - TSS region transcription start site region 149409
Tssr149410 17 78769058 to 78769076 18 - TSS region transcription start site region 149410
Tssr149411 17 78769077 to 78769101 24 - TSS region transcription start site region 149411
Tssr149412 17 78773595 to 78773604 9 - TSS region transcription start site region 149412
Cpgi9510 17 78834888 to 78835894 1006 CpG island CpG island 9510
Tssr149413 17 78835326 to 78835373 47 - TSS region transcription start site region 149413
Tssr145905 17 78835528 to 78835612 84 + TSS region transcription start site region 145905
Gpatch11 17 78835567 to 78848308 12741 + protein coding gene G patch domain containing 11
Tssr145906 17 78840959 to 78840988 29 + TSS region transcription start site region 145906
Gm6548 17 78850792 to 78851956 1164 - pseudogene predicted gene 6548
Eif2ak2 17 78852564 to 78882573 30009 - protein coding gene eukaryotic translation initiation factor 2-alpha kinase 2
Tssr149414 17 78853199 to 78853213 14 - TSS region transcription start site region 149414
Tssr149415 17 78855070 to 78855081 11 - TSS region transcription start site region 149415
Tssr149416 17 78856610 to 78856626 16 - TSS region transcription start site region 149416
Tssr149417 17 78858707 to 78858713 6 - TSS region transcription start site region 149417
n-R5s29 17 78858934 to 78859052 118 + rRNA gene nuclear encoded rRNA 5S 29
Tssr149418 17 78870477 to 78870491 14 - TSS region transcription start site region 149418
Cpgi9511 17 78872952 to 78873251 299 CpG island CpG island 9511
Tssr149419 17 78877265 to 78877293 28 - TSS region transcription start site region 149419
Tssr145907 17 78882003 to 78882027 24 + TSS region transcription start site region 145907
Gm26637 17 78882042 to 78892500 10458 + lincRNA gene predicted gene, 26637
Cpgi9512 17 78882435 to 78882771 336 CpG island CpG island 9512
Tssr149420 17 78882508 to 78882554 46 - TSS region transcription start site region 149420
Tssr149421 17 78882574 to 78882583 9 - TSS region transcription start site region 149421
Sult6b1 17 78883938 to 78906992 23054 - protein coding gene sulfotransferase family, cytosolic, 6B, member 1
Tssr149422 17 78895091 to 78895107 16 - TSS region transcription start site region 149422
Tssr149423 17 78895139 to 78895150 11 - TSS region transcription start site region 149423
Tssr149424 17 78915846 to 78915866 20 - TSS region transcription start site region 149424
Cpgi9513 17 78916243 to 78917125 882 CpG island CpG island 9513
Tssr145908 17 78916473 to 78916509 36 + TSS region transcription start site region 145908
Cebpzos 17 78916500 to 78920306 3806 + protein coding gene CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand
Tssr145909 17 78916518 to 78916531 13 + TSS region transcription start site region 145909
Tssr145910 17 78916533 to 78916560 27 + TSS region transcription start site region 145910
Tssr145911 17 78916641 to 78916677 36 + TSS region transcription start site region 145911
Cebpz 17 78919006 to 78937066 18060 - protein coding gene CCAAT/enhancer binding protein zeta
Tssr149425 17 78934189 to 78934194 5 - TSS region transcription start site region 149425
Cpgi9514 17 78936636 to 78937578 942 CpG island CpG island 9514
Tssr149426 17 78937031 to 78937074 43 - TSS region transcription start site region 149426
Tssr145912 17 78937124 to 78937183 59 + TSS region transcription start site region 145912
Ndufaf7 17 78937136 to 78948052 10916 + protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 7
Tssr145913 17 78937210 to 78937221 11 + TSS region transcription start site region 145913
Tssr5209 17 78937237 to 78937244 7 + TSS region transcription start site region 5209
Prkd3 17 78949405 to 79020816 71411 - protein coding gene protein kinase D3
D17Mit142 17 78965900 to 78966046 146 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 142
D17Mit142.2 17 78966101 to 78966220 119 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 142.2
Tssr149427 17 78966332 to 78966352 20 - TSS region transcription start site region 149427
Gm41622 17 78985362 to 79001693 16331 + lncRNA gene predicted gene, 41622
Tssr149428 17 78985393 to 78985400 7 - TSS region transcription start site region 149428
Tssr149429 17 78985405 to 78985426 21 - TSS region transcription start site region 149429
Tssr149430 17 78985428 to 78985468 40 - TSS region transcription start site region 149430
Tssr145914 17 78989327 to 78989338 11 + TSS region transcription start site region 145914
Sluc32 17 78993581 to 78993773 192 QTL susceptibility to lung cancer 32
D17Mit72 17 78993581 to 78993773 192 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 72
Scc4 17 78993581 to 78993773 192 QTL colon tumor susceptibility 4
Cpgi9515 17 79019939 to 79021403 1464 CpG island CpG island 9515
Tssr149431 17 79020702 to 79020710 8 - TSS region transcription start site region 149431
Tssr149432 17 79020740 to 79020803 63 - TSS region transcription start site region 149432
Tssr149433 17 79020826 to 79020859 33 - TSS region transcription start site region 149433
Gm26957 17 79041946 to 79042922 976 + pseudogene predicted gene, 26957
Qpct 17 79051906 to 79090378 38472 + protein coding gene glutaminyl-peptide cyclotransferase (glutaminyl cyclase)
Cpgi9516 17 79052033 to 79052874 841 CpG island CpG island 9516
Tssr145915 17 79052231 to 79052267 36 + TSS region transcription start site region 145915
Gm49869 17 79103278 to 79103744 466 - pseudogene predicted gene, 49869
Tssr145916 17 79134165 to 79134166 1 + TSS region transcription start site region 145916
D17Mit121 17 79203586 to 79203736 150 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 121
D17Mit187 17 79232122 to 79232368 246 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 187
Gm5230 17 79257410 to 79258049 639 - pseudogene predicted gene 5230
D17Mit42 17 79316511 to 79316665 154 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 42
Cdc42ep3 17 79333727 to 79355091 21364 - protein coding gene CDC42 effector protein (Rho GTPase binding) 3
Cpgi9517 17 79345361 to 79345712 351 CpG island CpG island 9517