Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:78251473-79581509

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Crim1 17 78200248 to 78376592 176344 + protein coding gene cysteine rich transmembrane BMP regulator 1 (chordin like)
Tssr145891 17 78264828 to 78264833 5 + TSS region transcription start site region 145891
Tssr145892 17 78272440 to 78272450 10 + TSS region transcription start site region 145892
Gm41620 17 78281373 to 78288362 6989 + lncRNA gene predicted gene, 41620
Gm25069 17 78302661 to 78302746 85 + miRNA gene predicted gene, 25069
Tssr145893 17 78308473 to 78308480 7 + TSS region transcription start site region 145893
Fez2 17 78369212 to 78418152 48940 - protein coding gene fasciculation and elongation protein zeta 2 (zygin II)
Tssr145894 17 78375786 to 78375799 13 + TSS region transcription start site region 145894
Gm32336 17 78396321 to 78400623 4302 - lncRNA gene predicted gene, 32336
Gm50034 17 78408816 to 78410357 1541 + antisense lncRNA gene predicted gene, 50034
Cpgi9505 17 78417464 to 78418307 843 CpG island CpG island 9505
Tssr149397 17 78417642 to 78417646 4 - TSS region transcription start site region 149397
Tssr149398 17 78417888 to 78417907 19 - TSS region transcription start site region 149398
Tssr149399 17 78418048 to 78418066 18 - TSS region transcription start site region 149399
Tssr149400 17 78418083 to 78418128 45 - TSS region transcription start site region 149400
Gm32464 17 78455199 to 78464103 8904 - lncRNA gene predicted gene, 32464
Gm19399 17 78458645 to 78458797 152 + pseudogene predicted gene, 19399
Tssr145895 17 78491549 to 78491552 3 + TSS region transcription start site region 145895
Gm10093 17 78491582 to 78493025 1443 + pseudogene predicted pseudogene 10093
Vit 17 78508064 to 78627408 119344 + protein coding gene vitrin
Tssr145896 17 78508114 to 78508133 19 + TSS region transcription start site region 145896
Tssr145897 17 78508136 to 78508164 28 + TSS region transcription start site region 145897
Tssr145898 17 78508210 to 78508217 7 + TSS region transcription start site region 145898
D17Mit242 17 78511005 to 78511102 97 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 242
Gm32573 17 78522229 to 78588788 66559 - lncRNA gene predicted gene, 32573
Cpgi9506 17 78522882 to 78523084 202 CpG island CpG island 9506
Gm22562 17 78533903 to 78534013 110 - rRNA gene predicted gene, 22562
Cpgi9507 17 78545789 to 78546006 217 CpG island CpG island 9507
Tssr145899 17 78560993 to 78561037 44 + TSS region transcription start site region 145899
Tssr145900 17 78573871 to 78573882 11 + TSS region transcription start site region 145900
Tssr145901 17 78573884 to 78573891 7 + TSS region transcription start site region 145901
Tssr145902 17 78573897 to 78573920 23 + TSS region transcription start site region 145902
Tssr145903 17 78573925 to 78573940 15 + TSS region transcription start site region 145903
Tssr145904 17 78573943 to 78573946 3 + TSS region transcription start site region 145904
Cpgi9508 17 78591640 to 78591897 257 CpG island CpG island 9508
Strn 17 78649908 to 78736914 87006 - protein coding gene striatin, calmodulin binding protein
Tssr149401 17 78651538 to 78651541 3 - TSS region transcription start site region 149401
Tssr149402 17 78665211 to 78665214 3 - TSS region transcription start site region 149402
Tssr149403 17 78684262 to 78684268 6 - TSS region transcription start site region 149403
Cpgi9509 17 78736111 to 78737198 1087 CpG island CpG island 9509
Tssr149404 17 78736510 to 78736524 14 - TSS region transcription start site region 149404
Tssr149405 17 78736534 to 78736586 52 - TSS region transcription start site region 149405
Tssr149406 17 78736606 to 78736633 27 - TSS region transcription start site region 149406
Tssr149407 17 78736636 to 78736643 7 - TSS region transcription start site region 149407
Tssr149408 17 78736651 to 78736670 19 - TSS region transcription start site region 149408
Gm49863 17 78750995 to 78751496 501 + pseudogene predicted gene, 49863
Gm18649 17 78752255 to 78752715 460 + pseudogene predicted gene, 18649
Heatr5b 17 78752898 to 78835364 82466 - protein coding gene HEAT repeat containing 5B
Tssr149409 17 78769041 to 78769053 12 - TSS region transcription start site region 149409
Tssr149410 17 78769058 to 78769076 18 - TSS region transcription start site region 149410
Tssr149411 17 78769077 to 78769101 24 - TSS region transcription start site region 149411
Tssr149412 17 78773595 to 78773604 9 - TSS region transcription start site region 149412
Cpgi9510 17 78834888 to 78835894 1006 CpG island CpG island 9510
Tssr149413 17 78835326 to 78835373 47 - TSS region transcription start site region 149413
Tssr145905 17 78835528 to 78835612 84 + TSS region transcription start site region 145905
Gpatch11 17 78835567 to 78848308 12741 + protein coding gene G patch domain containing 11
Tssr145906 17 78840959 to 78840988 29 + TSS region transcription start site region 145906
Gm6548 17 78850792 to 78851956 1164 - pseudogene predicted gene 6548
Eif2ak2 17 78852564 to 78882573 30009 - protein coding gene eukaryotic translation initiation factor 2-alpha kinase 2
Tssr149414 17 78853199 to 78853213 14 - TSS region transcription start site region 149414
Tssr149415 17 78855070 to 78855081 11 - TSS region transcription start site region 149415
Tssr149416 17 78856610 to 78856626 16 - TSS region transcription start site region 149416
Tssr149417 17 78858707 to 78858713 6 - TSS region transcription start site region 149417
n-R5s29 17 78858934 to 78859052 118 + rRNA gene nuclear encoded rRNA 5S 29
Tssr149418 17 78870477 to 78870491 14 - TSS region transcription start site region 149418
Cpgi9511 17 78872952 to 78873251 299 CpG island CpG island 9511
Tssr149419 17 78877265 to 78877293 28 - TSS region transcription start site region 149419
Tssr145907 17 78882003 to 78882027 24 + TSS region transcription start site region 145907
Gm26637 17 78882042 to 78892500 10458 + lincRNA gene predicted gene, 26637
Cpgi9512 17 78882435 to 78882771 336 CpG island CpG island 9512
Tssr149420 17 78882508 to 78882554 46 - TSS region transcription start site region 149420
Tssr149421 17 78882574 to 78882583 9 - TSS region transcription start site region 149421
Sult6b1 17 78883938 to 78906992 23054 - protein coding gene sulfotransferase family, cytosolic, 6B, member 1
Tssr149422 17 78895091 to 78895107 16 - TSS region transcription start site region 149422
Tssr149423 17 78895139 to 78895150 11 - TSS region transcription start site region 149423
Tssr149424 17 78915846 to 78915866 20 - TSS region transcription start site region 149424
Cpgi9513 17 78916243 to 78917125 882 CpG island CpG island 9513
Tssr145908 17 78916473 to 78916509 36 + TSS region transcription start site region 145908
Cebpzos 17 78916500 to 78920306 3806 + protein coding gene CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand
Tssr145909 17 78916518 to 78916531 13 + TSS region transcription start site region 145909
Tssr145910 17 78916533 to 78916560 27 + TSS region transcription start site region 145910
Tssr145911 17 78916641 to 78916677 36 + TSS region transcription start site region 145911
Cebpz 17 78919006 to 78937066 18060 - protein coding gene CCAAT/enhancer binding protein zeta
Tssr149425 17 78934189 to 78934194 5 - TSS region transcription start site region 149425
Cpgi9514 17 78936636 to 78937578 942 CpG island CpG island 9514
Tssr149426 17 78937031 to 78937074 43 - TSS region transcription start site region 149426
Tssr145912 17 78937124 to 78937183 59 + TSS region transcription start site region 145912
Ndufaf7 17 78937136 to 78948052 10916 + protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 7
Tssr145913 17 78937210 to 78937221 11 + TSS region transcription start site region 145913
Tssr5209 17 78937237 to 78937244 7 + TSS region transcription start site region 5209
Prkd3 17 78949405 to 79020816 71411 - protein coding gene protein kinase D3
D17Mit142 17 78965900 to 78966046 146 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 142
D17Mit142.2 17 78966101 to 78966220 119 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 142.2
Tssr149427 17 78966332 to 78966352 20 - TSS region transcription start site region 149427
Gm41622 17 78985362 to 79001693 16331 + lncRNA gene predicted gene, 41622
Tssr149428 17 78985393 to 78985400 7 - TSS region transcription start site region 149428
Tssr149429 17 78985405 to 78985426 21 - TSS region transcription start site region 149429
Tssr149430 17 78985428 to 78985468 40 - TSS region transcription start site region 149430
Tssr145914 17 78989327 to 78989338 11 + TSS region transcription start site region 145914
D17Mit72 17 78993581 to 78993773 192 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 72
Scc4 17 78993581 to 78993773 192 QTL colon tumor susceptibility 4
Sluc32 17 78993581 to 78993773 192 QTL susceptibility to lung cancer 32
Cpgi9515 17 79019939 to 79021403 1464 CpG island CpG island 9515
Tssr149431 17 79020702 to 79020710 8 - TSS region transcription start site region 149431
Tssr149432 17 79020740 to 79020803 63 - TSS region transcription start site region 149432
Tssr149433 17 79020826 to 79020859 33 - TSS region transcription start site region 149433
Gm26957 17 79041946 to 79042922 976 + pseudogene predicted gene, 26957
Qpct 17 79051906 to 79090378 38472 + protein coding gene glutaminyl-peptide cyclotransferase (glutaminyl cyclase)
Cpgi9516 17 79052033 to 79052874 841 CpG island CpG island 9516
Tssr145915 17 79052231 to 79052267 36 + TSS region transcription start site region 145915
Gm49869 17 79103278 to 79103744 466 - pseudogene predicted gene, 49869
Tssr145916 17 79134165 to 79134166 1 + TSS region transcription start site region 145916
D17Mit121 17 79203586 to 79203736 150 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 121
D17Mit187 17 79232122 to 79232368 246 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 187
Gm5230 17 79257410 to 79258049 639 - pseudogene predicted gene 5230
D17Mit42 17 79316511 to 79316665 154 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 42
Cdc42ep3 17 79333727 to 79355091 21364 - protein coding gene CDC42 effector protein (Rho GTPase binding) 3
Cpgi9517 17 79345361 to 79345712 351 CpG island CpG island 9517
Cpgi9518 17 79354245 to 79356253 2008 CpG island CpG island 9518
Gm17315 17 79354699 to 79358022 3323 + lincRNA gene predicted gene, 17315
Tssr149434 17 79354860 to 79354864 4 - TSS region transcription start site region 149434
Tssr149435 17 79354868 to 79354875 7 - TSS region transcription start site region 149435
Tssr149436 17 79354882 to 79354937 55 - TSS region transcription start site region 149436
Tssr149437 17 79354943 to 79354949 6 - TSS region transcription start site region 149437
Tssr149438 17 79354989 to 79355000 11 - TSS region transcription start site region 149438
Tssr149439 17 79355048 to 79355073 25 - TSS region transcription start site region 149439
Tssr149440 17 79355082 to 79355103 21 - TSS region transcription start site region 149440
Tssr149441 17 79355623 to 79355708 85 - TSS region transcription start site region 149441
Tssr149442 17 79355748 to 79355786 38 - TSS region transcription start site region 149442
Gm32954 17 79437919 to 79451714 13795 - lncRNA gene predicted gene, 32954
Tssr149443 17 79451635 to 79451644 9 - TSS region transcription start site region 149443
Tssr149444 17 79451649 to 79451664 15 - TSS region transcription start site region 149444
Tssr149445 17 79451714 to 79451726 12 - TSS region transcription start site region 149445
Tssr149446 17 79462588 to 79462589 1 - TSS region transcription start site region 149446
4930429F11Rik 17 79475624 to 79477885 2261 - lncRNA gene RIKEN cDNA 4930429F11 gene
Gm10494 17 79506049 to 79510486 4437 - lncRNA gene predicted gene 10494
Gm41623 17 79569915 to 79615433 45518 - lncRNA gene predicted gene, 41623
Gm7283 17 79572658 to 79573035 377 + pseudogene predicted gene 7283