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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:78238871-78908882

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Crim1 17 78200248 to 78376592 176344 + protein coding gene cysteine rich transmembrane BMP regulator 1 (chordin like)
Tssr145891 17 78264828 to 78264833 5 + TSS region transcription start site region 145891
Tssr145892 17 78272440 to 78272450 10 + TSS region transcription start site region 145892
Gm41620 17 78281373 to 78288362 6989 + lncRNA gene predicted gene, 41620
Gm25069 17 78302661 to 78302746 85 + miRNA gene predicted gene, 25069
Tssr145893 17 78308473 to 78308480 7 + TSS region transcription start site region 145893
Fez2 17 78369212 to 78418152 48940 - protein coding gene fasciculation and elongation protein zeta 2 (zygin II)
Tssr145894 17 78375786 to 78375799 13 + TSS region transcription start site region 145894
Gm32336 17 78396321 to 78400623 4302 - lncRNA gene predicted gene, 32336
Gm50034 17 78408816 to 78410357 1541 + antisense lncRNA gene predicted gene, 50034
Cpgi9505 17 78417464 to 78418307 843 CpG island CpG island 9505
Tssr149397 17 78417642 to 78417646 4 - TSS region transcription start site region 149397
Tssr149398 17 78417888 to 78417907 19 - TSS region transcription start site region 149398
Tssr149399 17 78418048 to 78418066 18 - TSS region transcription start site region 149399
Tssr149400 17 78418083 to 78418128 45 - TSS region transcription start site region 149400
Gm32464 17 78455199 to 78464103 8904 - lncRNA gene predicted gene, 32464
Gm19399 17 78458645 to 78458797 152 + pseudogene predicted gene, 19399
Tssr145895 17 78491549 to 78491552 3 + TSS region transcription start site region 145895
Gm10093 17 78491582 to 78493025 1443 + pseudogene predicted pseudogene 10093
Vit 17 78508064 to 78627408 119344 + protein coding gene vitrin
Tssr145896 17 78508114 to 78508133 19 + TSS region transcription start site region 145896
Tssr145897 17 78508136 to 78508164 28 + TSS region transcription start site region 145897
Tssr145898 17 78508210 to 78508217 7 + TSS region transcription start site region 145898
D17Mit242 17 78511005 to 78511102 97 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 242
Gm32573 17 78522229 to 78588788 66559 - lncRNA gene predicted gene, 32573
Cpgi9506 17 78522882 to 78523084 202 CpG island CpG island 9506
Gm22562 17 78533903 to 78534013 110 - rRNA gene predicted gene, 22562
Cpgi9507 17 78545789 to 78546006 217 CpG island CpG island 9507
Tssr145899 17 78560993 to 78561037 44 + TSS region transcription start site region 145899
Tssr145900 17 78573871 to 78573882 11 + TSS region transcription start site region 145900
Tssr145901 17 78573884 to 78573891 7 + TSS region transcription start site region 145901
Tssr145902 17 78573897 to 78573920 23 + TSS region transcription start site region 145902
Tssr145903 17 78573925 to 78573940 15 + TSS region transcription start site region 145903
Tssr145904 17 78573943 to 78573946 3 + TSS region transcription start site region 145904
Cpgi9508 17 78591640 to 78591897 257 CpG island CpG island 9508
Strn 17 78649908 to 78736914 87006 - protein coding gene striatin, calmodulin binding protein
Tssr149401 17 78651538 to 78651541 3 - TSS region transcription start site region 149401
Tssr149402 17 78665211 to 78665214 3 - TSS region transcription start site region 149402
Tssr149403 17 78684262 to 78684268 6 - TSS region transcription start site region 149403
Cpgi9509 17 78736111 to 78737198 1087 CpG island CpG island 9509
Tssr149404 17 78736510 to 78736524 14 - TSS region transcription start site region 149404
Tssr149405 17 78736534 to 78736586 52 - TSS region transcription start site region 149405
Tssr149406 17 78736606 to 78736633 27 - TSS region transcription start site region 149406
Tssr149407 17 78736636 to 78736643 7 - TSS region transcription start site region 149407
Tssr149408 17 78736651 to 78736670 19 - TSS region transcription start site region 149408
Gm49863 17 78750995 to 78751496 501 + pseudogene predicted gene, 49863
Gm18649 17 78752255 to 78752715 460 + pseudogene predicted gene, 18649
Heatr5b 17 78752898 to 78835364 82466 - protein coding gene HEAT repeat containing 5B
Tssr149409 17 78769041 to 78769053 12 - TSS region transcription start site region 149409
Tssr149410 17 78769058 to 78769076 18 - TSS region transcription start site region 149410
Tssr149411 17 78769077 to 78769101 24 - TSS region transcription start site region 149411
Tssr149412 17 78773595 to 78773604 9 - TSS region transcription start site region 149412
Cpgi9510 17 78834888 to 78835894 1006 CpG island CpG island 9510
Tssr149413 17 78835326 to 78835373 47 - TSS region transcription start site region 149413
Tssr145905 17 78835528 to 78835612 84 + TSS region transcription start site region 145905
Gpatch11 17 78835567 to 78848308 12741 + protein coding gene G patch domain containing 11
Tssr145906 17 78840959 to 78840988 29 + TSS region transcription start site region 145906
Gm6548 17 78850792 to 78851956 1164 - pseudogene predicted gene 6548
Eif2ak2 17 78852564 to 78882573 30009 - protein coding gene eukaryotic translation initiation factor 2-alpha kinase 2
Tssr149414 17 78853199 to 78853213 14 - TSS region transcription start site region 149414
Tssr149415 17 78855070 to 78855081 11 - TSS region transcription start site region 149415
Tssr149416 17 78856610 to 78856626 16 - TSS region transcription start site region 149416
Tssr149417 17 78858707 to 78858713 6 - TSS region transcription start site region 149417
n-R5s29 17 78858934 to 78859052 118 + rRNA gene nuclear encoded rRNA 5S 29
Tssr149418 17 78870477 to 78870491 14 - TSS region transcription start site region 149418
Cpgi9511 17 78872952 to 78873251 299 CpG island CpG island 9511
Tssr149419 17 78877265 to 78877293 28 - TSS region transcription start site region 149419
Tssr145907 17 78882003 to 78882027 24 + TSS region transcription start site region 145907
Gm26637 17 78882042 to 78892500 10458 + lincRNA gene predicted gene, 26637
Cpgi9512 17 78882435 to 78882771 336 CpG island CpG island 9512
Tssr149420 17 78882508 to 78882554 46 - TSS region transcription start site region 149420
Tssr149421 17 78882574 to 78882583 9 - TSS region transcription start site region 149421
Sult6b1 17 78883938 to 78906992 23054 - protein coding gene sulfotransferase family, cytosolic, 6B, member 1
Tssr149422 17 78895091 to 78895107 16 - TSS region transcription start site region 149422
Tssr149423 17 78895139 to 78895150 11 - TSS region transcription start site region 149423