Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:7315871-8535878

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139 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcp10a 17 7324657 to 7345860 21203 + protein coding gene t-complex protein 10a
Tssr142494 17 7324660 to 7324677 17 + TSS region transcription start site region 142494
Ttll2 17 7350885 to 7352696 1811 - protein coding gene tubulin tyrosine ligase-like family, member 2
Gm49630 17 7352064 to 7371979 19915 - protein coding gene predicted gene, 49630
Unc93a2 17 7362815 to 7385464 22649 - protein coding gene unc-93 homolog A2
Gm26057 17 7374193 to 7374357 164 - snRNA gene predicted gene, 26057
Tssr146346 17 7397300 to 7397308 8 - TSS region transcription start site region 146346
5830477G23Rik 17 7399524 to 7406609 7085 unclassified non-coding RNA gene RIKEN cDNA 5830477G23 gene
Gm36458 17 7411244 to 7416515 5271 - lncRNA gene predicted gene, 36458
Gm6553 17 7429287 to 7430242 955 - pseudogene predicted gene 6553
Tssr142495 17 7576142 to 7576154 12 + TSS region transcription start site region 142495
Gm33086 17 7576190 to 7578389 2199 + lincRNA gene predicted gene, 33086
Gm33158 17 7631809 to 7637736 5927 - lncRNA gene predicted gene, 33158
Tssr142496 17 7645295 to 7645303 8 + TSS region transcription start site region 142496
Gm49632 17 7645328 to 7660238 14910 + lincRNA gene predicted gene, 49632
D17Mit171 17 7657011 to 7657118 107 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 171
Gm25872 17 7704840 to 7704939 99 + miRNA gene predicted gene, 25872
Fndc1 17 7738569 to 7827302 88733 - protein coding gene fibronectin type III domain containing 1
Tssr146347 17 7765228 to 7765302 74 - TSS region transcription start site region 146347
Tssr146348 17 7765339 to 7765356 17 - TSS region transcription start site region 146348
Cpgi8579 17 7771262 to 7771549 287 CpG island CpG island 8579
Gm7140 17 7812660 to 7813540 880 + pseudogene predicted gene 7140
Cpgi8580 17 7826835 to 7827774 939 CpG island CpG island 8580
Tssr146349 17 7827289 to 7827310 21 - TSS region transcription start site region 146349
Cpgi8581 17 7827778 to 7827934 156 CpG island CpG island 8581
E430024P14Rik 17 7832241 to 7837272 5031 - antisense lncRNA gene RIKEN cDNA E430024P14 gene
Tssr146350 17 7871955 to 7871961 6 - TSS region transcription start site region 146350
Tssr146351 17 7874871 to 7874880 9 - TSS region transcription start site region 146351
Tssr142497 17 7875357 to 7875367 10 + TSS region transcription start site region 142497
Tssr142498 17 7875377 to 7875393 16 + TSS region transcription start site region 142498
Tssr142499 17 7878172 to 7878177 5 + TSS region transcription start site region 142499
Tssr4998 17 7879850 to 7879875 25 + TSS region transcription start site region 4998
Tssr142500 17 7925871 to 7925878 7 + TSS region transcription start site region 142500
Tssr142501 17 7925957 to 7925971 14 + TSS region transcription start site region 142501
Tssr142502 17 7925990 to 7926006 16 + TSS region transcription start site region 142502
Tagap 17 7926000 to 7934897 8897 + protein coding gene T cell activation Rho GTPase activating protein
Tssr142503 17 7926099 to 7926113 14 + TSS region transcription start site region 142503
Tssr142504 17 7926941 to 7926949 8 + TSS region transcription start site region 142504
Tssr146352 17 7927987 to 7927998 11 - TSS region transcription start site region 146352
Tssr142505 17 7928353 to 7928363 10 + TSS region transcription start site region 142505
Tssr142506 17 7928404 to 7928420 16 + TSS region transcription start site region 142506
Tssr142507 17 7928514 to 7928550 36 + TSS region transcription start site region 142507
Tssr142508 17 7929378 to 7929394 16 + TSS region transcription start site region 142508
Tssr142509 17 7931377 to 7931388 11 + TSS region transcription start site region 142509
Tssr142510 17 7945585 to 7945636 51 + TSS region transcription start site region 142510
Rsph3a 17 7945614 to 7979556 33942 + protein coding gene radial spoke 3A homolog (Chlamydomonas)
Tssr146353 17 7945844 to 7945891 47 - TSS region transcription start site region 146353
Cpgi8582 17 7945907 to 7946205 298 CpG island CpG island 8582
Tssr142511 17 7945981 to 7945990 9 + TSS region transcription start site region 142511
Tssr142512 17 7945992 to 7946041 49 + TSS region transcription start site region 142512
Gm1604a 17 7982522 to 8101241 118719 - protein coding gene predicted gene 1604A
Tssr146354 17 7987237 to 7987239 2 - TSS region transcription start site region 146354
Gm49673 17 8082695 to 8147788 65093 - protein coding gene predicted gene, 49673
Gm22416 17 8084075 to 8084162 87 + snoRNA gene predicted gene, 22416
D17Mit98b 17 8104167 to 8104426 259 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 98b
Gm41523 17 8115831 to 8123701 7870 - lncRNA gene predicted gene, 41523
Rnaset2a 17 8128592 to 8147827 19235 - protein coding gene ribonuclease T2A
D17Mit195b 17 8147170 to 8147262 92 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 195b
Cpgi8583 17 8147561 to 8148236 675 CpG island CpG island 8583
Tssr146355 17 8147704 to 8147734 30 - TSS region transcription start site region 146355
Fgfr1op 17 8165491 to 8196477 30986 + protein coding gene Fgfr1 oncogene partner
Tssr142513 17 8165558 to 8165593 35 + TSS region transcription start site region 142513
Cpgi8584 17 8165673 to 8165846 173 CpG island CpG island 8584
Tssr142514 17 8165917 to 8165922 5 + TSS region transcription start site region 142514
Tssr142515 17 8195948 to 8195957 9 + TSS region transcription start site region 142515
Tssr142516 17 8195964 to 8195976 12 + TSS region transcription start site region 142516
Tssr142517 17 8236031 to 8236046 15 + TSS region transcription start site region 142517
Ccr6 17 8236043 to 8257141 21098 + protein coding gene chemokine (C-C motif) receptor 6
Tssr142518 17 8236061 to 8236075 14 + TSS region transcription start site region 142518
Tssr142519 17 8236107 to 8236118 11 + TSS region transcription start site region 142519
Tssr142520 17 8238330 to 8238337 7 + TSS region transcription start site region 142520
Tssr142521 17 8245039 to 8245050 11 + TSS region transcription start site region 142521
Tssr142522 17 8245054 to 8245092 38 + TSS region transcription start site region 142522
Tssr142523 17 8256051 to 8256056 5 + TSS region transcription start site region 142523
Gm33799 17 8257037 to 8272517 15480 - lncRNA gene predicted gene, 33799
Gm8465 17 8260567 to 8262232 1665 + pseudogene predicted gene 8465
Cpgi8585 17 8260671 to 8260936 265 CpG island CpG island 8585
Tssr146356 17 8272526 to 8272529 3 - TSS region transcription start site region 146356
Cpgi8586 17 8282874 to 8284773 1899 CpG island CpG island 8586
Tssr142524 17 8283416 to 8283441 25 + TSS region transcription start site region 142524
Tssr146357 17 8283615 to 8283634 19 - TSS region transcription start site region 146357
Tssr142525 17 8283770 to 8283829 59 + TSS region transcription start site region 142525
Mpc1 17 8283813 to 8297662 13849 + protein coding gene mitochondrial pyruvate carrier 1
Tssr4999 17 8283835 to 8283846 11 + TSS region transcription start site region 4999
Tssr5000 17 8283850 to 8283861 11 + TSS region transcription start site region 5000
Tssr142526 17 8283947 to 8283971 24 + TSS region transcription start site region 142526
A630084N20Rik 17 8285448 to 8288009 2561 unclassified gene RIKEN cDNA A630084N20 gene
4930506C21Rik 17 8293366 to 8311080 17714 - lncRNA gene RIKEN cDNA 4930506C21 gene
Tssr146358 17 8299669 to 8299680 11 - TSS region transcription start site region 146358
Tssr146359 17 8299729 to 8299738 9 - TSS region transcription start site region 146359
Cpgi8587 17 8310837 to 8311497 660 CpG island CpG island 8587
Tssr142527 17 8311082 to 8311093 11 + TSS region transcription start site region 142527
Tssr142528 17 8311101 to 8311168 67 + TSS region transcription start site region 142528
Sft2d1 17 8311103 to 8327442 16339 + protein coding gene SFT2 domain containing 1
Gm49987 17 8311109 to 8396852 85743 + unclassified gene predicted gene, 49987
Tssr142529 17 8340348 to 8340369 21 + TSS region transcription start site region 142529
Tssr142530 17 8340399 to 8340406 7 + TSS region transcription start site region 142530
Prr18 17 8340406 to 8344113 3707 + protein coding gene proline rich 18
Tssr142531 17 8340408 to 8340450 42 + TSS region transcription start site region 142531
Cpgi8588 17 8340417 to 8342255 1838 CpG island CpG island 8588
Tssr142532 17 8340455 to 8340480 25 + TSS region transcription start site region 142532
Tssr142533 17 8340492 to 8340513 21 + TSS region transcription start site region 142533
Tssr142534 17 8340601 to 8340608 7 + TSS region transcription start site region 142534
Tssr142535 17 8340710 to 8340747 37 + TSS region transcription start site region 142535
Tssr142536 17 8340997 to 8341018 21 + TSS region transcription start site region 142536
Tssr142537 17 8341027 to 8341047 20 + TSS region transcription start site region 142537
Gm46592 17 8344200 to 8348221 4021 - protein coding gene predicted gene, 46592
Tssr142538 17 8356218 to 8356231 13 + TSS region transcription start site region 142538
Gm46593 17 8362107 to 8362445 338 - pseudogene predicted gene, 46593
T2 17 8372010 to 8422728 50718 + protein coding gene brachyury 2
Tssr5001 17 8372074 to 8372097 23 + TSS region transcription start site region 5001
Gm16702 17 8379045 to 8389468 10423 - lincRNA gene predicted gene, 16702
Gm5491 17 8384053 to 8384660 607 - pseudogene predicted gene 5491
Cpgi8589 17 8389026 to 8389433 407 CpG island CpG island 8589
Cpgi8590 17 8396784 to 8396985 201 CpG island CpG island 8590
Gm34036 17 8411619 to 8415211 3592 - lncRNA gene predicted gene, 34036
Cpgi8591 17 8429656 to 8429834 178 CpG island CpG island 8591
Cpgi8592 17 8433279 to 8435355 2076 CpG island CpG island 8592
Tssr142539 17 8434265 to 8434283 18 + TSS region transcription start site region 142539
T 17 8434423 to 8442496 8073 + protein coding gene brachyury, T-box transcription factor T
Obq19 17 8443121 to 8443244 123 QTL obesity QTL 19
D17Mit143 17 8443121 to 8443244 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 143
D17Mit143.2 17 8443228 to 8443342 114 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 143.2
D17Mit246 17 8459684 to 8459785 101 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 246
Tssr142540 17 8500464 to 8500480 16 + TSS region transcription start site region 142540
Cpgi8593 17 8506018 to 8506303 285 CpG island CpG island 8593
Tssr5002 17 8506335 to 8506353 18 + TSS region transcription start site region 5002
Cpgi8594 17 8513475 to 8513712 237 CpG island CpG island 8594
Cpgi8595 17 8524574 to 8526182 1608 CpG island CpG island 8595
Tssr146360 17 8524852 to 8524878 26 - TSS region transcription start site region 146360
Tssr142541 17 8525174 to 8525190 16 + TSS region transcription start site region 142541
Tssr142542 17 8525197 to 8525239 42 + TSS region transcription start site region 142542
Tssr142543 17 8525245 to 8525254 9 + TSS region transcription start site region 142543
Tssr142544 17 8525369 to 8525396 27 + TSS region transcription start site region 142544
Pde10a 17 8525372 to 8986648 461276 + protein coding gene phosphodiesterase 10A
Tssr142545 17 8525434 to 8525444 10 + TSS region transcription start site region 142545
Tssr142546 17 8526996 to 8527025 29 + TSS region transcription start site region 142546
Flal1 17 11000000 to 8000000 -3000000 QTL fatty liver accumulation QTL 1, females only
Phl1 17 29268449 to 7657011 -21611438 QTL progressive hearing loss 1