Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:71497984-71699154

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ndc80 17 71496100 to 71526857 30757 - protein coding gene NDC80 kinetochore complex component
Gm23115 17 71506436 to 71506543 107 - rRNA gene predicted gene, 23115
Cpgi9475 17 71526385 to 71527360 975 CpG island CpG island 9475
Tssr149294 17 71526758 to 71526817 59 - TSS region transcription start site region 149294
Tssr149295 17 71526819 to 71526837 18 - TSS region transcription start site region 149295
Mettl4-ps1 17 71528986 to 71544207 15221 + pseudogene methyltransferase like 4, pseudogene 1
Cpgi9476 17 71551590 to 71552608 1018 CpG island CpG island 9476
Tssr145751 17 71552031 to 71552079 48 + TSS region transcription start site region 145751
Spdya 17 71552061 to 71589533 37472 + protein coding gene speedy/RINGO cell cycle regulator family, member A
Tssr145752 17 71552083 to 71552094 11 + TSS region transcription start site region 145752
Trmt61b 17 71557027 to 71598755 41728 - unclassified non-coding RNA gene tRNA methyltransferase 61B
Gm18140 17 71569786 to 71570419 633 + pseudogene predicted gene, 18140
Tssr145753 17 71569826 to 71569831 5 + TSS region transcription start site region 145753
A630024P14Rik 17 71593780 to 71595523 1743 unclassified gene RIKEN cDNA A630024P14 gene
Cpgi9477 17 71597984 to 71599154 1170 CpG island CpG island 9477
Tssr149296 17 71598667 to 71598678 11 - TSS region transcription start site region 149296
Tssr149297 17 71598698 to 71598722 24 - TSS region transcription start site region 149297
Tssr149298 17 71598724 to 71598781 57 - TSS region transcription start site region 149298
n-TCgca52 17 71599271 to 71599342 71 + tRNA gene nuclear encoded tRNA cysteine 52 (anticodon GCA)
Gm50047 17 71608723 to 71608942 219 - pseudogene predicted gene, 50047
Gm30091 17 71612829 to 71615983 3154 - lncRNA gene predicted gene, 30091
Cpgi9478 17 71615958 to 71617227 1269 CpG island CpG island 9478
Wdr43 17 71616174 to 71659031 42857 + protein coding gene WD repeat domain 43
Tssr145754 17 71616219 to 71616259 40 + TSS region transcription start site region 145754
Snord92 17 71631279 to 71631361 82 + snoRNA gene small nucleolar RNA, C/D box 92
Snord53 17 71640889 to 71640956 67 + snoRNA gene small nucleolar RNA, C/D box 53
Gm22858 17 71641584 to 71641659 75 + snoRNA gene predicted gene, 22858
Tssr145755 17 71642797 to 71642804 7 + TSS region transcription start site region 145755
Tssr145756 17 71654051 to 71654056 5 + TSS region transcription start site region 145756
Tssr145757 17 71657515 to 71657556 41 + TSS region transcription start site region 145757
Cpgi9479 17 71662779 to 71662992 213 CpG island CpG island 9479
Tssr145758 17 71673210 to 71673220 10 + TSS region transcription start site region 145758
Tssr145759 17 71673232 to 71673241 9 + TSS region transcription start site region 145759
Tssr145760 17 71673255 to 71673271 16 + TSS region transcription start site region 145760
Togaram2 17 71673261 to 71729669 56408 + protein coding gene TOG array regulator of axonemal microtubules 2
Tssr145761 17 71673277 to 71673288 11 + TSS region transcription start site region 145761
Cpgi9480 17 71674994 to 71675373 379 CpG island CpG island 9480
Tssr149299 17 71680700 to 71680704 4 - TSS region transcription start site region 149299
Tssr145762 17 71684632 to 71684646 14 + TSS region transcription start site region 145762