Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:71456841-72047098

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smchd1 17 71344489 to 71475343 130854 - protein coding gene SMC hinge domain containing 1
D17Wsu164e 17 71458201 to 71458436 235 DNA segment DNA segment, Chr 17, Wayne State University 164, expressed
Gm4707 17 71458327 to 71459918 1591 - pseudogene predicted gene 4707
Cpgi9474 17 71474581 to 71476097 1516 CpG island CpG island 9474
Tssr149287 17 71475285 to 71475340 55 - TSS region transcription start site region 149287
Tssr149288 17 71475348 to 71475359 11 - TSS region transcription start site region 149288
Tssr149289 17 71475360 to 71475371 11 - TSS region transcription start site region 149289
Tssr149290 17 71475477 to 71475505 28 - TSS region transcription start site region 149290
Tssr149291 17 71475515 to 71475526 11 - TSS region transcription start site region 149291
Tssr149292 17 71475891 to 71475903 12 - TSS region transcription start site region 149292
Gm18738 17 71483392 to 71483914 522 + pseudogene predicted gene, 18738
Tssr149293 17 71486336 to 71486361 25 - TSS region transcription start site region 149293
Ndc80 17 71496100 to 71526857 30757 - protein coding gene NDC80 kinetochore complex component
Gm23115 17 71506436 to 71506543 107 - rRNA gene predicted gene, 23115
Cpgi9475 17 71526385 to 71527360 975 CpG island CpG island 9475
Tssr149294 17 71526758 to 71526817 59 - TSS region transcription start site region 149294
Tssr149295 17 71526819 to 71526837 18 - TSS region transcription start site region 149295
Mettl4-ps1 17 71528986 to 71544207 15221 + pseudogene methyltransferase like 4, pseudogene 1
Cpgi9476 17 71551590 to 71552608 1018 CpG island CpG island 9476
Tssr145751 17 71552031 to 71552079 48 + TSS region transcription start site region 145751
Spdya 17 71552061 to 71589533 37472 + protein coding gene speedy/RINGO cell cycle regulator family, member A
Tssr145752 17 71552083 to 71552094 11 + TSS region transcription start site region 145752
Trmt61b 17 71557027 to 71598755 41728 - unclassified non-coding RNA gene tRNA methyltransferase 61B
Gm18140 17 71569786 to 71570419 633 + pseudogene predicted gene, 18140
Tssr145753 17 71569826 to 71569831 5 + TSS region transcription start site region 145753
A630024P14Rik 17 71593780 to 71595523 1743 unclassified gene RIKEN cDNA A630024P14 gene
Cpgi9477 17 71597984 to 71599154 1170 CpG island CpG island 9477
Tssr149296 17 71598667 to 71598678 11 - TSS region transcription start site region 149296
Tssr149297 17 71598698 to 71598722 24 - TSS region transcription start site region 149297
Tssr149298 17 71598724 to 71598781 57 - TSS region transcription start site region 149298
n-TCgca52 17 71599271 to 71599342 71 + tRNA gene nuclear encoded tRNA cysteine 52 (anticodon GCA)
Gm50047 17 71608723 to 71608942 219 - pseudogene predicted gene, 50047
Gm30091 17 71612829 to 71615983 3154 - lncRNA gene predicted gene, 30091
Cpgi9478 17 71615958 to 71617227 1269 CpG island CpG island 9478
Wdr43 17 71616174 to 71659031 42857 + protein coding gene WD repeat domain 43
Tssr145754 17 71616219 to 71616259 40 + TSS region transcription start site region 145754
Snord92 17 71631279 to 71631361 82 + snoRNA gene small nucleolar RNA, C/D box 92
Snord53 17 71640889 to 71640956 67 + snoRNA gene small nucleolar RNA, C/D box 53
Gm22858 17 71641584 to 71641659 75 + snoRNA gene predicted gene, 22858
Tssr145755 17 71642797 to 71642804 7 + TSS region transcription start site region 145755
Tssr145756 17 71654051 to 71654056 5 + TSS region transcription start site region 145756
Tssr145757 17 71657515 to 71657556 41 + TSS region transcription start site region 145757
Cpgi9479 17 71662779 to 71662992 213 CpG island CpG island 9479
Tssr145758 17 71673210 to 71673220 10 + TSS region transcription start site region 145758
Tssr145759 17 71673232 to 71673241 9 + TSS region transcription start site region 145759
Tssr145760 17 71673255 to 71673271 16 + TSS region transcription start site region 145760
Togaram2 17 71673261 to 71729669 56408 + protein coding gene TOG array regulator of axonemal microtubules 2
Tssr145761 17 71673277 to 71673288 11 + TSS region transcription start site region 145761
Cpgi9480 17 71674994 to 71675373 379 CpG island CpG island 9480
Tssr149299 17 71680700 to 71680704 4 - TSS region transcription start site region 149299
Tssr145762 17 71684632 to 71684646 14 + TSS region transcription start site region 145762
Gm15641 17 71716849 to 71717817 968 - antisense lncRNA gene predicted gene 15641
Pcare 17 71743555 to 71752885 9330 - protein coding gene photoreceptor cilium actin regulator
Cpgi9481 17 71751841 to 71752098 257 CpG island CpG island 9481
Tssr149300 17 71752867 to 71752891 24 - TSS region transcription start site region 149300
Tssr149301 17 71752901 to 71752917 16 - TSS region transcription start site region 149301
Tssr149302 17 71752920 to 71752925 5 - TSS region transcription start site region 149302
Gm49922 17 71755149 to 71756762 1613 - unclassified gene predicted gene, 49922
Gm30140 17 71766888 to 71782562 15674 - lncRNA gene predicted gene, 30140
Tssr145763 17 71769651 to 71769660 9 + TSS region transcription start site region 145763
Clip4 17 71769672 to 71864210 94538 + protein coding gene CAP-GLY domain containing linker protein family, member 4
Tssr145764 17 71769673 to 71769678 5 + TSS region transcription start site region 145764
Tssr145765 17 71769684 to 71769725 41 + TSS region transcription start site region 145765
Tssr145766 17 71769729 to 71769749 20 + TSS region transcription start site region 145766
Tssr145767 17 71781215 to 71781221 6 + TSS region transcription start site region 145767
Tssr145768 17 71781242 to 71781253 11 + TSS region transcription start site region 145768
Tssr145769 17 71781275 to 71781284 9 + TSS region transcription start site region 145769
Tssr145770 17 71781287 to 71781306 19 + TSS region transcription start site region 145770
Tssr145771 17 71781315 to 71781332 17 + TSS region transcription start site region 145771
Cpgi9482 17 71782097 to 71783491 1394 CpG island CpG island 9482
Tssr145772 17 71782587 to 71782632 45 + TSS region transcription start site region 145772
Tssr145773 17 71782634 to 71782721 87 + TSS region transcription start site region 145773
Tssr5196 17 71787204 to 71787228 24 + TSS region transcription start site region 5196
Tssr145774 17 71800781 to 71800821 40 + TSS region transcription start site region 145774
Lfnq6 17 71867893 to 73818625 1950732 QTL lung function QTL 6
D17Mit218 17 71867893 to 71868008 115 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 218
Alk 17 71868972 to 72604627 735655 - protein coding gene anaplastic lymphoma kinase
Cpgi9483 17 71869381 to 71870105 724 CpG island CpG island 9483
D17Mit120 17 71891415 to 71891545 130 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 120
Gm49924 17 71925232 to 71927030 1798 - unclassified gene predicted gene, 49924