Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:6896244-7931515

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700122H20Rik 17 6895940 to 6901718 5778 + antisense lncRNA gene RIKEN cDNA 1700122H20 gene
Rsph3b 17 6904716 to 6948356 43640 - protein coding gene radial spoke 3B homolog (Chlamydomonas)
Cpgi8575 17 6948068 to 6948424 356 CpG island CpG island 8575
Tssr146341 17 6948283 to 6948349 66 - TSS region transcription start site region 146341
Gm49719 17 6948446 to 6957196 8750 + antisense lncRNA gene predicted gene, 49719
Tssr146342 17 6948721 to 6948745 24 - TSS region transcription start site region 146342
Tagap1 17 6955011 to 6961156 6145 - protein coding gene T cell activation GTPase activating protein 1
Cpgi8576 17 6960869 to 6961060 191 CpG island CpG island 8576
Cpgi8577 17 6978451 to 6979133 682 CpG island CpG island 8577
Rnaset2b 17 6978860 to 6998193 19333 + protein coding gene ribonuclease T2B
Tssr142486 17 6978893 to 6978912 19 + TSS region transcription start site region 142486
Gm49721 17 6978904 to 7043950 65046 + protein coding gene predicted gene, 49721
Tssr142487 17 6978963 to 6978986 23 + TSS region transcription start site region 142487
D17Mit195a 17 6979430 to 6979508 78 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 195a
Tssr146343 17 6993251 to 6993265 14 - TSS region transcription start site region 146343
D17Mit98a 17 7022347 to 7022606 259 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 98a
Gm1604b 17 7025568 to 7087597 62029 + protein coding gene predicted gene 1604b
Gm25119 17 7042478 to 7042565 87 - snoRNA gene predicted gene, 25119
Tssr4997 17 7079245 to 7079272 27 + TSS region transcription start site region 4997
Tssr142488 17 7138438 to 7138451 13 + TSS region transcription start site region 142488
Tssr142489 17 7138463 to 7138483 20 + TSS region transcription start site region 142489
Tssr142490 17 7138495 to 7138502 7 + TSS region transcription start site region 142490
Cpgi8578 17 7169348 to 7170807 1459 CpG island CpG island 8578
Tssr146344 17 7169721 to 7169744 23 - TSS region transcription start site region 146344
Tssr146345 17 7169817 to 7169828 11 - TSS region transcription start site region 146345
Tssr142491 17 7170085 to 7170097 12 + TSS region transcription start site region 142491
Tssr142492 17 7170101 to 7170132 31 + TSS region transcription start site region 142492
Rps6ka2 17 7170115 to 7303315 133200 + protein coding gene ribosomal protein S6 kinase, polypeptide 2
Tssr142493 17 7170137 to 7170163 26 + TSS region transcription start site region 142493
D17Jcs90 17 7286943 to 7287138 195 DNA segment DNA segment, Chr 17, John C. Schimenti 90
Gpr31a 17 7314888 to 7315846 958 - pseudogene G protein-coupled receptor 31, D17Leh66a region
Tcp10a 17 7324657 to 7345860 21203 + protein coding gene t-complex protein 10a
Tssr142494 17 7324660 to 7324677 17 + TSS region transcription start site region 142494
Ttll2 17 7350885 to 7352696 1811 - protein coding gene tubulin tyrosine ligase-like family, member 2
Gm49630 17 7352064 to 7371979 19915 - protein coding gene predicted gene, 49630
Unc93a2 17 7362815 to 7385464 22649 - protein coding gene unc-93 homolog A2
Gm26057 17 7374193 to 7374357 164 - snRNA gene predicted gene, 26057
Tssr146346 17 7397300 to 7397308 8 - TSS region transcription start site region 146346
5830477G23Rik 17 7399524 to 7406609 7085 unclassified non-coding RNA gene RIKEN cDNA 5830477G23 gene
Gm36458 17 7411244 to 7416515 5271 - lncRNA gene predicted gene, 36458
Gm6553 17 7429287 to 7430242 955 - pseudogene predicted gene 6553
Tssr142495 17 7576142 to 7576154 12 + TSS region transcription start site region 142495
Gm33086 17 7576190 to 7578389 2199 + lincRNA gene predicted gene, 33086
Gm33158 17 7631809 to 7637736 5927 - lncRNA gene predicted gene, 33158
Tssr142496 17 7645295 to 7645303 8 + TSS region transcription start site region 142496
Gm49632 17 7645328 to 7660238 14910 + lincRNA gene predicted gene, 49632
D17Mit171 17 7657011 to 7657118 107 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 171
Gm25872 17 7704840 to 7704939 99 + miRNA gene predicted gene, 25872
Fndc1 17 7738569 to 7827302 88733 - protein coding gene fibronectin type III domain containing 1
Tssr146347 17 7765228 to 7765302 74 - TSS region transcription start site region 146347
Tssr146348 17 7765339 to 7765356 17 - TSS region transcription start site region 146348
Cpgi8579 17 7771262 to 7771549 287 CpG island CpG island 8579
Gm7140 17 7812660 to 7813540 880 + pseudogene predicted gene 7140
Cpgi8580 17 7826835 to 7827774 939 CpG island CpG island 8580
Tssr146349 17 7827289 to 7827310 21 - TSS region transcription start site region 146349
Cpgi8581 17 7827778 to 7827934 156 CpG island CpG island 8581
E430024P14Rik 17 7832241 to 7837272 5031 - antisense lncRNA gene RIKEN cDNA E430024P14 gene
Tssr146350 17 7871955 to 7871961 6 - TSS region transcription start site region 146350
Tssr146351 17 7874871 to 7874880 9 - TSS region transcription start site region 146351
Tssr142497 17 7875357 to 7875367 10 + TSS region transcription start site region 142497
Tssr142498 17 7875377 to 7875393 16 + TSS region transcription start site region 142498
Tssr142499 17 7878172 to 7878177 5 + TSS region transcription start site region 142499
Tssr4998 17 7879850 to 7879875 25 + TSS region transcription start site region 4998
Tssr142500 17 7925871 to 7925878 7 + TSS region transcription start site region 142500
Tssr142501 17 7925957 to 7925971 14 + TSS region transcription start site region 142501
Tssr142502 17 7925990 to 7926006 16 + TSS region transcription start site region 142502
Tagap 17 7926000 to 7934897 8897 + protein coding gene T cell activation Rho GTPase activating protein
Tssr142503 17 7926099 to 7926113 14 + TSS region transcription start site region 142503
Tssr142504 17 7926941 to 7926949 8 + TSS region transcription start site region 142504
Tssr146352 17 7927987 to 7927998 11 - TSS region transcription start site region 146352
Tssr142505 17 7928353 to 7928363 10 + TSS region transcription start site region 142505
Tssr142506 17 7928404 to 7928420 16 + TSS region transcription start site region 142506
Tssr142507 17 7928514 to 7928550 36 + TSS region transcription start site region 142507
Tssr142508 17 7929378 to 7929394 16 + TSS region transcription start site region 142508
Tssr142509 17 7931377 to 7931388 11 + TSS region transcription start site region 142509
Phl1 17 29268449 to 7657011 -21611438 QTL progressive hearing loss 1