Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:6657064-8066979

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr4993 17 6659053 to 6659083 30 + TSS region transcription start site region 4993
Sytl3 17 6659093 to 6738044 78951 + protein coding gene synaptotagmin-like 3
Tssr142474 17 6659181 to 6659186 5 + TSS region transcription start site region 142474
Gm36309 17 6716001 to 6728327 12326 - lncRNA gene predicted gene, 36309
Tssr142475 17 6730223 to 6730261 38 + TSS region transcription start site region 142475
Ezr 17 6738131 to 6782780 44649 - protein coding gene ezrin
Tssr146319 17 6739803 to 6739830 27 - TSS region transcription start site region 146319
Tssr4994 17 6741235 to 6741257 22 - TSS region transcription start site region 4994
Tssr142476 17 6742352 to 6742376 24 + TSS region transcription start site region 142476
Tssr4995 17 6743277 to 6743288 11 + TSS region transcription start site region 4995
Tssr146320 17 6743809 to 6743820 11 - TSS region transcription start site region 146320
Tssr146321 17 6743838 to 6743846 8 - TSS region transcription start site region 146321
Tssr146322 17 6745991 to 6746029 38 - TSS region transcription start site region 146322
Tssr142477 17 6746286 to 6746292 6 + TSS region transcription start site region 142477
Tssr142478 17 6746309 to 6746316 7 + TSS region transcription start site region 142478
Tssr146323 17 6746813 to 6746820 7 - TSS region transcription start site region 146323
Tssr146324 17 6746859 to 6746868 9 - TSS region transcription start site region 146324
Tssr146325 17 6746887 to 6746892 5 - TSS region transcription start site region 146325
Tssr146326 17 6754718 to 6754744 26 - TSS region transcription start site region 146326
Tssr146327 17 6754827 to 6754838 11 - TSS region transcription start site region 146327
Tssr146328 17 6756019 to 6756030 11 - TSS region transcription start site region 146328
Tssr146329 17 6756090 to 6756103 13 - TSS region transcription start site region 146329
Tssr146330 17 6756943 to 6756951 8 - TSS region transcription start site region 146330
Tssr146331 17 6757444 to 6757446 2 - TSS region transcription start site region 146331
D17Mit1003 17 6762584 to 6762702 118 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1003
Tssr146332 17 6778340 to 6778344 4 - TSS region transcription start site region 146332
Cpgi8572 17 6782047 to 6783638 1591 CpG island CpG island 8572
Tssr146333 17 6782746 to 6782762 16 - TSS region transcription start site region 146333
Tssr146334 17 6782775 to 6782784 9 - TSS region transcription start site region 146334
Tssr142479 17 6782851 to 6782877 26 + TSS region transcription start site region 142479
Tssr146335 17 6784444 to 6784458 14 - TSS region transcription start site region 146335
Tssr146336 17 6785440 to 6785461 21 - TSS region transcription start site region 146336
Gm41521 17 6788164 to 6792489 4325 - lncRNA gene predicted gene, 41521
Gm49717 17 6790793 to 6791495 702 + pseudogene predicted gene, 49717
Gm2885 17 6798383 to 6807124 8741 - lincRNA gene predicted gene 2885
4933426B08Rik 17 6808509 to 6818529 10020 + lincRNA gene RIKEN cDNA 4933426B08 gene
Tssr142480 17 6816586 to 6816606 20 + TSS region transcription start site region 142480
Tssr146337 17 6827270 to 6827282 12 - TSS region transcription start site region 146337
Cpgi8573 17 6827533 to 6828501 968 CpG island CpG island 8573
Tssr146338 17 6827799 to 6827835 36 - TSS region transcription start site region 146338
Tssr146339 17 6827841 to 6827882 41 - TSS region transcription start site region 146339
Tssr4996 17 6827978 to 6827984 6 + TSS region transcription start site region 4996
Tssr146340 17 6827999 to 6828021 22 - TSS region transcription start site region 146340
Tssr142481 17 6828066 to 6828084 18 + TSS region transcription start site region 142481
Tssr142482 17 6828095 to 6828139 44 + TSS region transcription start site region 142482
Tssr142483 17 6828362 to 6828373 11 + TSS region transcription start site region 142483
Tssr142484 17 6828469 to 6828483 14 + TSS region transcription start site region 142484
Cpgi8574 17 6861573 to 6861998 425 CpG island CpG island 8574
Mir692-1 17 6895229 to 6895337 108 - miRNA gene microRNA 692-1
1700122H20Rik 17 6895940 to 6901718 5778 + antisense lncRNA gene RIKEN cDNA 1700122H20 gene
Tssr142485 17 6895952 to 6895963 11 + TSS region transcription start site region 142485
Rsph3b 17 6904716 to 6948356 43640 - protein coding gene radial spoke 3B homolog (Chlamydomonas)
Cpgi8575 17 6948068 to 6948424 356 CpG island CpG island 8575
Tssr146341 17 6948283 to 6948349 66 - TSS region transcription start site region 146341
Gm49719 17 6948446 to 6957196 8750 + antisense lncRNA gene predicted gene, 49719
Tssr146342 17 6948721 to 6948745 24 - TSS region transcription start site region 146342
Tagap1 17 6955011 to 6961156 6145 - protein coding gene T cell activation GTPase activating protein 1
Cpgi8576 17 6960869 to 6961060 191 CpG island CpG island 8576
Cpgi8577 17 6978451 to 6979133 682 CpG island CpG island 8577
Rnaset2b 17 6978860 to 6998193 19333 + protein coding gene ribonuclease T2B
Tssr142486 17 6978893 to 6978912 19 + TSS region transcription start site region 142486
Gm49721 17 6978904 to 7043950 65046 + protein coding gene predicted gene, 49721
Tssr142487 17 6978963 to 6978986 23 + TSS region transcription start site region 142487
D17Mit195a 17 6979430 to 6979508 78 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 195a
Tssr146343 17 6993251 to 6993265 14 - TSS region transcription start site region 146343
D17Mit98a 17 7022347 to 7022606 259 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 98a
Gm1604b 17 7025568 to 7087597 62029 + protein coding gene predicted gene 1604b
Gm25119 17 7042478 to 7042565 87 - snoRNA gene predicted gene, 25119
Tssr4997 17 7079245 to 7079272 27 + TSS region transcription start site region 4997
Tssr142488 17 7138438 to 7138451 13 + TSS region transcription start site region 142488
Tssr142489 17 7138463 to 7138483 20 + TSS region transcription start site region 142489
Tssr142490 17 7138495 to 7138502 7 + TSS region transcription start site region 142490
Cpgi8578 17 7169348 to 7170807 1459 CpG island CpG island 8578
Tssr146344 17 7169721 to 7169744 23 - TSS region transcription start site region 146344
Tssr146345 17 7169817 to 7169828 11 - TSS region transcription start site region 146345
Tssr142491 17 7170085 to 7170097 12 + TSS region transcription start site region 142491
Tssr142492 17 7170101 to 7170132 31 + TSS region transcription start site region 142492
Rps6ka2 17 7170115 to 7303315 133200 + protein coding gene ribosomal protein S6 kinase, polypeptide 2
Tssr142493 17 7170137 to 7170163 26 + TSS region transcription start site region 142493
D17Jcs90 17 7286943 to 7287138 195 DNA segment DNA segment, Chr 17, John C. Schimenti 90
Gpr31a 17 7314888 to 7315846 958 - pseudogene G protein-coupled receptor 31, D17Leh66a region
Tcp10a 17 7324657 to 7345860 21203 + protein coding gene t-complex protein 10a
Tssr142494 17 7324660 to 7324677 17 + TSS region transcription start site region 142494
Ttll2 17 7350885 to 7352696 1811 - protein coding gene tubulin tyrosine ligase-like family, member 2
Gm49630 17 7352064 to 7371979 19915 - protein coding gene predicted gene, 49630
Unc93a2 17 7362815 to 7385464 22649 - protein coding gene unc-93 homolog A2
Gm26057 17 7374193 to 7374357 164 - snRNA gene predicted gene, 26057
Tssr146346 17 7397300 to 7397308 8 - TSS region transcription start site region 146346
5830477G23Rik 17 7399524 to 7406609 7085 unclassified non-coding RNA gene RIKEN cDNA 5830477G23 gene
Gm36458 17 7411244 to 7416515 5271 - lncRNA gene predicted gene, 36458
Gm6553 17 7429287 to 7430242 955 - pseudogene predicted gene 6553
Tssr142495 17 7576142 to 7576154 12 + TSS region transcription start site region 142495
Gm33086 17 7576190 to 7578389 2199 + lincRNA gene predicted gene, 33086
Gm33158 17 7631809 to 7637736 5927 - lncRNA gene predicted gene, 33158
Tssr142496 17 7645295 to 7645303 8 + TSS region transcription start site region 142496
Gm49632 17 7645328 to 7660238 14910 + lincRNA gene predicted gene, 49632
D17Mit171 17 7657011 to 7657118 107 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 171
Gm25872 17 7704840 to 7704939 99 + miRNA gene predicted gene, 25872
Fndc1 17 7738569 to 7827302 88733 - protein coding gene fibronectin type III domain containing 1
Tssr146347 17 7765228 to 7765302 74 - TSS region transcription start site region 146347
Tssr146348 17 7765339 to 7765356 17 - TSS region transcription start site region 146348
Cpgi8579 17 7771262 to 7771549 287 CpG island CpG island 8579
Gm7140 17 7812660 to 7813540 880 + pseudogene predicted gene 7140
Cpgi8580 17 7826835 to 7827774 939 CpG island CpG island 8580
Tssr146349 17 7827289 to 7827310 21 - TSS region transcription start site region 146349
Cpgi8581 17 7827778 to 7827934 156 CpG island CpG island 8581
E430024P14Rik 17 7832241 to 7837272 5031 - antisense lncRNA gene RIKEN cDNA E430024P14 gene
Tssr146350 17 7871955 to 7871961 6 - TSS region transcription start site region 146350
Tssr146351 17 7874871 to 7874880 9 - TSS region transcription start site region 146351
Tssr142497 17 7875357 to 7875367 10 + TSS region transcription start site region 142497
Tssr142498 17 7875377 to 7875393 16 + TSS region transcription start site region 142498
Tssr142499 17 7878172 to 7878177 5 + TSS region transcription start site region 142499
Tssr4998 17 7879850 to 7879875 25 + TSS region transcription start site region 4998
Tssr142500 17 7925871 to 7925878 7 + TSS region transcription start site region 142500
Tssr142501 17 7925957 to 7925971 14 + TSS region transcription start site region 142501
Tssr142502 17 7925990 to 7926006 16 + TSS region transcription start site region 142502
Tagap 17 7926000 to 7934897 8897 + protein coding gene T cell activation Rho GTPase activating protein
Tssr142503 17 7926099 to 7926113 14 + TSS region transcription start site region 142503
Tssr142504 17 7926941 to 7926949 8 + TSS region transcription start site region 142504
Tssr146352 17 7927987 to 7927998 11 - TSS region transcription start site region 146352
Tssr142505 17 7928353 to 7928363 10 + TSS region transcription start site region 142505
Tssr142506 17 7928404 to 7928420 16 + TSS region transcription start site region 142506
Tssr142507 17 7928514 to 7928550 36 + TSS region transcription start site region 142507
Tssr142508 17 7929378 to 7929394 16 + TSS region transcription start site region 142508
Tssr142509 17 7931377 to 7931388 11 + TSS region transcription start site region 142509
Tssr142510 17 7945585 to 7945636 51 + TSS region transcription start site region 142510
Rsph3a 17 7945614 to 7979556 33942 + protein coding gene radial spoke 3A homolog (Chlamydomonas)
Tssr146353 17 7945844 to 7945891 47 - TSS region transcription start site region 146353
Cpgi8582 17 7945907 to 7946205 298 CpG island CpG island 8582
Tssr142511 17 7945981 to 7945990 9 + TSS region transcription start site region 142511
Tssr142512 17 7945992 to 7946041 49 + TSS region transcription start site region 142512
Gm1604a 17 7982522 to 8101241 118719 - protein coding gene predicted gene 1604A
Tssr146354 17 7987237 to 7987239 2 - TSS region transcription start site region 146354
Flal1 17 11000000 to 8000000 -3000000 QTL fatty liver accumulation QTL 1, females only
Phl1 17 29268449 to 7657011 -21611438 QTL progressive hearing loss 1