Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:66449569-68549755

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mtcl1 17 66336982 to 66449750 112768 - protein coding gene microtubule crosslinking factor 1
Lfibq28 17 66436200 to 67505241 1069041 QTL liver fibrosis QTL 28
Cpgi9433 17 66448021 to 66450529 2508 CpG island CpG island 9433
Tssr149123 17 66449599 to 66449614 15 - TSS region transcription start site region 149123
Tssr149124 17 66449624 to 66449650 26 - TSS region transcription start site region 149124
Tssr149125 17 66449715 to 66449759 44 - TSS region transcription start site region 149125
Gm49937 17 66449854 to 66452599 2745 + bidirectional promoter lncRNA gene predicted gene, 49937
Tssr145603 17 66470736 to 66470747 11 + TSS region transcription start site region 145603
Tssr145604 17 66471955 to 66471963 8 + TSS region transcription start site region 145604
Cpgi9434 17 66479164 to 66479598 434 CpG island CpG island 9434
Tssr149126 17 66479388 to 66479407 19 - TSS region transcription start site region 149126
Tssr145605 17 66480493 to 66480543 50 + TSS region transcription start site region 145605
Tssr149127 17 66481474 to 66481487 13 - TSS region transcription start site region 149127
Tssr149128 17 66483834 to 66483840 6 - TSS region transcription start site region 149128
Tssr149129 17 66483865 to 66483876 11 - TSS region transcription start site region 149129
Tssr149130 17 66484040 to 66484052 12 - TSS region transcription start site region 149130
Tssr145606 17 66485247 to 66485306 59 + TSS region transcription start site region 145606
Tssr145607 17 66485984 to 66486022 38 + TSS region transcription start site region 145607
Rab12 17 66494512 to 66519729 25217 - protein coding gene RAB12, member RAS oncogene family
Tssr149131 17 66494698 to 66494701 3 - TSS region transcription start site region 149131
Tssr149132 17 66495455 to 66495457 2 - TSS region transcription start site region 149132
Tssr149133 17 66504208 to 66504217 9 - TSS region transcription start site region 149133
Tssr149134 17 66518049 to 66518053 4 - TSS region transcription start site region 149134
Cpgi9435 17 66518707 to 66520199 1492 CpG island CpG island 9435
Tssr145608 17 66518777 to 66518795 18 + TSS region transcription start site region 145608
Gm41608 17 66518861 to 66524531 5670 + lncRNA gene predicted gene, 41608
Tssr149135 17 66519666 to 66519727 61 - TSS region transcription start site region 149135
Tssr149136 17 66519734 to 66519746 12 - TSS region transcription start site region 149136
Gm49938 17 66532103 to 66541512 9409 + lincRNA gene predicted gene, 49938
9030409C19Rik 17 66549108 to 66551920 2812 unclassified gene RIKEN cDNA 9030409C19 gene
Themis3 17 66555252 to 66594622 39370 - protein coding gene thymocyte selection associated family member 3
Tssr149137 17 66594573 to 66594591 18 - TSS region transcription start site region 149137
Tssr149138 17 66594592 to 66594654 62 - TSS region transcription start site region 149138
Tssr149139 17 66595332 to 66595337 5 - TSS region transcription start site region 149139
Gm46576 17 66624894 to 66625042 148 - pseudogene predicted gene, 46576
Ptprm 17 66666947 to 67354457 687510 - protein coding gene protein tyrosine phosphatase, receptor type, M
Gm49941 17 66681738 to 66682194 456 - pseudogene predicted gene, 49941
Cpgi9436 17 66683301 to 66683475 174 CpG island CpG island 9436
Tssr149140 17 66694025 to 66694034 9 - TSS region transcription start site region 149140
Tssr149141 17 66694059 to 66694070 11 - TSS region transcription start site region 149141
1700016K05Rik 17 66714454 to 66720485 6031 + antisense lncRNA gene RIKEN cDNA 1700016K05 gene
Tssr145609 17 66714468 to 66714491 23 + TSS region transcription start site region 145609
Gm47471 17 66738754 to 66746047 7293 + antisense lncRNA gene predicted gene, 47471
Gm49939 17 66778881 to 66779133 252 + pseudogene predicted gene, 49939
Gm18961 17 66823120 to 66823780 660 + pseudogene predicted gene, 18961
Gm49943 17 66824490 to 66824628 138 - pseudogene predicted gene, 49943
Gm49940 17 66862240 to 66862626 386 + pseudogene predicted gene, 49940
Ahl3 17 66896962 to 66897108 146 QTL age related hearing loss 3
D17Mit119 17 66896962 to 66897108 146 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 119
Gm49942 17 66926825 to 66930199 3374 - unclassified gene predicted gene, 49942
Gm9984 17 67010485 to 67019394 8909 + antisense lncRNA gene predicted gene 9984
Tssr145610 17 67021054 to 67021061 7 + TSS region transcription start site region 145610
Mir5709 17 67026147 to 67026235 88 - miRNA gene microRNA 5709
Tssr149142 17 67047975 to 67048018 43 - TSS region transcription start site region 149142
Tssr149143 17 67061485 to 67061532 47 - TSS region transcription start site region 149143
Tssr149144 17 67095389 to 67095393 4 - TSS region transcription start site region 149144
Tssr149145 17 67120420 to 67120423 3 - TSS region transcription start site region 149145
Tssr149146 17 67125951 to 67125954 3 - TSS region transcription start site region 149146
Cpgi9437 17 67126367 to 67126598 231 CpG island CpG island 9437
Tssr149147 17 67143439 to 67143457 18 - TSS region transcription start site region 149147
Tssr149148 17 67143602 to 67143613 11 - TSS region transcription start site region 149148
Tssr149149 17 67143618 to 67143630 12 - TSS region transcription start site region 149149
D17Mit53 17 67173215 to 67173349 134 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 53
Tssr149150 17 67176350 to 67176354 4 - TSS region transcription start site region 149150
Tssr149151 17 67243074 to 67243077 3 - TSS region transcription start site region 149151
Tssr149152 17 67298979 to 67298983 4 - TSS region transcription start site region 149152
Tssr149153 17 67308280 to 67308284 4 - TSS region transcription start site region 149153
Tssr149154 17 67308368 to 67308372 4 - TSS region transcription start site region 149154
Tssr149155 17 67315639 to 67315652 13 - TSS region transcription start site region 149155
D230046O15Rik 17 67330159 to 67332334 2175 unclassified gene RIKEN cDNA D230046O15 gene
Tssr149156 17 67346477 to 67346483 6 - TSS region transcription start site region 149156
Tssr149157 17 67350039 to 67350045 6 - TSS region transcription start site region 149157
Cpgi9438 17 67352998 to 67355141 2143 CpG island CpG island 9438
Tssr149158 17 67354266 to 67354282 16 - TSS region transcription start site region 149158
Tssr149159 17 67354472 to 67354485 13 - TSS region transcription start site region 149159
Tssr149160 17 67354498 to 67354520 22 - TSS region transcription start site region 149160
Tssr149161 17 67354524 to 67354537 13 - TSS region transcription start site region 149161
Tssr149162 17 67354542 to 67354553 11 - TSS region transcription start site region 149162
Tssr149163 17 67354922 to 67354965 43 - TSS region transcription start site region 149163
Tssr149164 17 67354991 to 67355003 12 - TSS region transcription start site region 149164
Gm36152 17 67358822 to 67359906 1084 + lncRNA gene predicted gene, 36152
Cpgi9439 17 67461037 to 67461359 322 CpG island CpG island 9439
D17Mit193 17 67499569 to 67499755 186 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 193
Tssr145611 17 67521161 to 67521167 6 + TSS region transcription start site region 145611
Gm22277 17 67551607 to 67551883 276 + unclassified non-coding RNA gene predicted gene, 22277
Gm36201 17 67559748 to 67629332 69584 - lincRNA gene predicted gene, 36201
D17Mit184 17 67566464 to 67566600 136 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 184
Tssr145612 17 67629612 to 67629622 10 + TSS region transcription start site region 145612
Lrrc30 17 67630965 to 67632723 1758 - protein coding gene leucine rich repeat containing 30
Tssr149165 17 67632484 to 67632527 43 - TSS region transcription start site region 149165
Tssr149166 17 67632640 to 67632664 24 - TSS region transcription start site region 149166
Tssr149167 17 67632671 to 67632689 18 - TSS region transcription start site region 149167
Tssr149168 17 67632707 to 67632728 21 - TSS region transcription start site region 149168
Tssr149169 17 67632730 to 67632748 18 - TSS region transcription start site region 149169
D17Mit71 17 67661467 to 67661572 105 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 71
Cpgi9440 17 67696862 to 67698088 1226 CpG island CpG island 9440
Tssr145613 17 67697227 to 67697246 19 + TSS region transcription start site region 145613
Tssr145614 17 67697253 to 67697276 23 + TSS region transcription start site region 145614
Lama1 17 67697259 to 67822647 125388 + protein coding gene laminin, alpha 1
Tssr145615 17 67722279 to 67722295 16 + TSS region transcription start site region 145615
Tssr145616 17 67722353 to 67722379 26 + TSS region transcription start site region 145616
Tssr145617 17 67728557 to 67728561 4 + TSS region transcription start site region 145617
Tssr149170 17 67842046 to 67842051 5 - TSS region transcription start site region 149170
Arhgap28 17 67842713 to 68004120 161407 - protein coding gene Rho GTPase activating protein 28
Gm17097 17 67850126 to 67851063 937 - pseudogene predicted gene 17097
Tssr149171 17 67868260 to 67868264 4 - TSS region transcription start site region 149171
Cpgi9441 17 67869723 to 67869975 252 CpG island CpG island 9441
Tssr149172 17 67924514 to 67924519 5 - TSS region transcription start site region 149172
Tssr149173 17 67950908 to 67950983 75 - TSS region transcription start site region 149173
Tssr149174 17 67950984 to 67950996 12 - TSS region transcription start site region 149174
Tssr149175 17 67955707 to 67955721 14 - TSS region transcription start site region 149175
Tssr149176 17 67955940 to 67955952 12 - TSS region transcription start site region 149176
Tssr149177 17 67955997 to 67956008 11 - TSS region transcription start site region 149177
Tssr149178 17 67967073 to 67967075 2 - TSS region transcription start site region 149178
Tssr149179 17 67993086 to 67993095 9 - TSS region transcription start site region 149179
Tssr149180 17 67993177 to 67993193 16 - TSS region transcription start site region 149180
Cpgi9442 17 68003690 to 68004676 986 CpG island CpG island 9442
Tssr5192 17 68004062 to 68004073 11 - TSS region transcription start site region 5192
Tssr149181 17 68004075 to 68004140 65 - TSS region transcription start site region 149181
Gm49944 17 68025818 to 68173556 147738 - lincRNA gene predicted gene, 49944
Gm49945 17 68113319 to 68114386 1067 - lincRNA gene predicted gene, 49945
D17Mit3 17 68143589 to 68143719 130 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 3
Gm36252 17 68182815 to 68187543 4728 - lincRNA gene predicted gene, 36252
Tssr145618 17 68187908 to 68187920 12 + TSS region transcription start site region 145618
Tssr145619 17 68187931 to 68187949 18 + TSS region transcription start site region 145619
Gm36312 17 68187979 to 68197421 9442 + lncRNA gene predicted gene, 36312
Cpgi9443 17 68273527 to 68274327 800 CpG island CpG island 9443
L3mbtl4 17 68273797 to 68780086 506289 + protein coding gene L3MBTL4 histone methyl-lysine binding protein
Tssr5193 17 68314572 to 68314577 5 + TSS region transcription start site region 5193
Tssr145620 17 68314595 to 68314609 14 + TSS region transcription start site region 145620
Gm15974 17 68371280 to 68371810 530 - pseudogene predicted gene 15974
Tssr5194 17 68406201 to 68406202 1 + TSS region transcription start site region 5194
D17Mit185 17 68451430 to 68451617 187 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 185
Bmch7 17 68451430 to 68451617 187 QTL bone mechanical trait 7
Chlq9 17 68451430 to 68451617 187 QTL circulating hormone level QTL 9