Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:66191947-67829457

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm20742 17 66193352 to 66199820 6468 + lincRNA gene predicted gene, 20742
Tssr149112 17 66206674 to 66206714 40 - TSS region transcription start site region 149112
Tssr145599 17 66206805 to 66206833 28 + TSS region transcription start site region 145599
Tssr5190 17 66211528 to 66211534 6 + TSS region transcription start site region 5190
Gm17891 17 66227249 to 66228027 778 - pseudogene predicted gene, 17891
Gm49932 17 66231949 to 66236369 4420 - lincRNA gene predicted gene, 49932
Tssr145600 17 66233547 to 66233571 24 + TSS region transcription start site region 145600
Cpgi9427 17 66234521 to 66234759 238 CpG island CpG island 9427
Tssr145601 17 66235746 to 66235753 7 + TSS region transcription start site region 145601
Tssr149113 17 66266901 to 66266929 28 - TSS region transcription start site region 149113
Gm49933 17 66319076 to 66319512 436 - pseudogene predicted gene, 49933
Tssr149114 17 66319531 to 66319547 16 - TSS region transcription start site region 149114
Tssr5191 17 66320487 to 66320500 13 + TSS region transcription start site region 5191
Mtcl1 17 66336982 to 66449750 112768 - protein coding gene microtubule crosslinking factor 1
Cpgi9428 17 66343009 to 66343700 691 CpG island CpG island 9428
Tssr149115 17 66345416 to 66345425 9 - TSS region transcription start site region 149115
Tssr149116 17 66346550 to 66346565 15 - TSS region transcription start site region 149116
C130090I23Rik 17 66348864 to 66352964 4100 unclassified gene RIKEN cDNA C130090I23 gene
Tssr149117 17 66349668 to 66349672 4 - TSS region transcription start site region 149117
Tssr149118 17 66357720 to 66357723 3 - TSS region transcription start site region 149118
Cpgi9429 17 66357931 to 66358206 275 CpG island CpG island 9429
Cpgi9430 17 66363927 to 66364759 832 CpG island CpG island 9430
Tssr145602 17 66364591 to 66364622 31 + TSS region transcription start site region 145602
Tssr149119 17 66378893 to 66378908 15 - TSS region transcription start site region 149119
Cpgi9431 17 66379389 to 66380134 745 CpG island CpG island 9431
Tssr149120 17 66413240 to 66413241 1 - TSS region transcription start site region 149120
Gm4705 17 66413631 to 66413984 353 - pseudogene predicted gene 4705
Cpgi9432 17 66417153 to 66417328 175 CpG island CpG island 9432
Tssr149121 17 66419698 to 66419699 1 - TSS region transcription start site region 149121
Lfibq28 17 66436200 to 67505241 1069041 QTL liver fibrosis QTL 28
Cpgi9433 17 66448021 to 66450529 2508 CpG island CpG island 9433
Tssr149122 17 66449432 to 66449442 10 - TSS region transcription start site region 149122
Tssr149123 17 66449599 to 66449614 15 - TSS region transcription start site region 149123
Tssr149124 17 66449624 to 66449650 26 - TSS region transcription start site region 149124
Tssr149125 17 66449715 to 66449759 44 - TSS region transcription start site region 149125
Gm49937 17 66449854 to 66452599 2745 + bidirectional promoter lncRNA gene predicted gene, 49937
Tssr145603 17 66470736 to 66470747 11 + TSS region transcription start site region 145603
Tssr145604 17 66471955 to 66471963 8 + TSS region transcription start site region 145604
Cpgi9434 17 66479164 to 66479598 434 CpG island CpG island 9434
Tssr149126 17 66479388 to 66479407 19 - TSS region transcription start site region 149126
Tssr145605 17 66480493 to 66480543 50 + TSS region transcription start site region 145605
Tssr149127 17 66481474 to 66481487 13 - TSS region transcription start site region 149127
Tssr149128 17 66483834 to 66483840 6 - TSS region transcription start site region 149128
Tssr149129 17 66483865 to 66483876 11 - TSS region transcription start site region 149129
Tssr149130 17 66484040 to 66484052 12 - TSS region transcription start site region 149130
Tssr145606 17 66485247 to 66485306 59 + TSS region transcription start site region 145606
Tssr145607 17 66485984 to 66486022 38 + TSS region transcription start site region 145607
Rab12 17 66494512 to 66519729 25217 - protein coding gene RAB12, member RAS oncogene family
Tssr149131 17 66494698 to 66494701 3 - TSS region transcription start site region 149131
Tssr149132 17 66495455 to 66495457 2 - TSS region transcription start site region 149132
Tssr149133 17 66504208 to 66504217 9 - TSS region transcription start site region 149133
Tssr149134 17 66518049 to 66518053 4 - TSS region transcription start site region 149134
Cpgi9435 17 66518707 to 66520199 1492 CpG island CpG island 9435
Tssr145608 17 66518777 to 66518795 18 + TSS region transcription start site region 145608
Gm41608 17 66518861 to 66524531 5670 + lncRNA gene predicted gene, 41608
Tssr149135 17 66519666 to 66519727 61 - TSS region transcription start site region 149135
Tssr149136 17 66519734 to 66519746 12 - TSS region transcription start site region 149136
Gm49938 17 66532103 to 66541512 9409 + lincRNA gene predicted gene, 49938
9030409C19Rik 17 66549108 to 66551920 2812 unclassified gene RIKEN cDNA 9030409C19 gene
Themis3 17 66555252 to 66594622 39370 - protein coding gene thymocyte selection associated family member 3
Tssr149137 17 66594573 to 66594591 18 - TSS region transcription start site region 149137
Tssr149138 17 66594592 to 66594654 62 - TSS region transcription start site region 149138
Tssr149139 17 66595332 to 66595337 5 - TSS region transcription start site region 149139
Gm46576 17 66624894 to 66625042 148 - pseudogene predicted gene, 46576
Ptprm 17 66666947 to 67354457 687510 - protein coding gene protein tyrosine phosphatase, receptor type, M
Gm49941 17 66681738 to 66682194 456 - pseudogene predicted gene, 49941
Cpgi9436 17 66683301 to 66683475 174 CpG island CpG island 9436
Tssr149140 17 66694025 to 66694034 9 - TSS region transcription start site region 149140
Tssr149141 17 66694059 to 66694070 11 - TSS region transcription start site region 149141
1700016K05Rik 17 66714454 to 66720485 6031 + antisense lncRNA gene RIKEN cDNA 1700016K05 gene
Tssr145609 17 66714468 to 66714491 23 + TSS region transcription start site region 145609
Gm47471 17 66738754 to 66746047 7293 + antisense lncRNA gene predicted gene, 47471
Gm49939 17 66778881 to 66779133 252 + pseudogene predicted gene, 49939
Gm18961 17 66823120 to 66823780 660 + pseudogene predicted gene, 18961
Gm49943 17 66824490 to 66824628 138 - pseudogene predicted gene, 49943
Gm49940 17 66862240 to 66862626 386 + pseudogene predicted gene, 49940
Ahl3 17 66896962 to 66897108 146 QTL age related hearing loss 3
D17Mit119 17 66896962 to 66897108 146 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 119
Gm49942 17 66926825 to 66930199 3374 - unclassified gene predicted gene, 49942
Gm9984 17 67010485 to 67019394 8909 + antisense lncRNA gene predicted gene 9984
Tssr145610 17 67021054 to 67021061 7 + TSS region transcription start site region 145610
Mir5709 17 67026147 to 67026235 88 - miRNA gene microRNA 5709
Tssr149142 17 67047975 to 67048018 43 - TSS region transcription start site region 149142
Tssr149143 17 67061485 to 67061532 47 - TSS region transcription start site region 149143
Tssr149144 17 67095389 to 67095393 4 - TSS region transcription start site region 149144
Tssr149145 17 67120420 to 67120423 3 - TSS region transcription start site region 149145
Tssr149146 17 67125951 to 67125954 3 - TSS region transcription start site region 149146
Cpgi9437 17 67126367 to 67126598 231 CpG island CpG island 9437
Tssr149147 17 67143439 to 67143457 18 - TSS region transcription start site region 149147
Tssr149148 17 67143602 to 67143613 11 - TSS region transcription start site region 149148
Tssr149149 17 67143618 to 67143630 12 - TSS region transcription start site region 149149
D17Mit53 17 67173215 to 67173349 134 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 53
Tssr149150 17 67176350 to 67176354 4 - TSS region transcription start site region 149150
Tssr149151 17 67243074 to 67243077 3 - TSS region transcription start site region 149151
Tssr149152 17 67298979 to 67298983 4 - TSS region transcription start site region 149152
Tssr149153 17 67308280 to 67308284 4 - TSS region transcription start site region 149153
Tssr149154 17 67308368 to 67308372 4 - TSS region transcription start site region 149154
Tssr149155 17 67315639 to 67315652 13 - TSS region transcription start site region 149155
D230046O15Rik 17 67330159 to 67332334 2175 unclassified gene RIKEN cDNA D230046O15 gene
Tssr149156 17 67346477 to 67346483 6 - TSS region transcription start site region 149156
Tssr149157 17 67350039 to 67350045 6 - TSS region transcription start site region 149157
Cpgi9438 17 67352998 to 67355141 2143 CpG island CpG island 9438
Tssr149158 17 67354266 to 67354282 16 - TSS region transcription start site region 149158
Tssr149159 17 67354472 to 67354485 13 - TSS region transcription start site region 149159
Tssr149160 17 67354498 to 67354520 22 - TSS region transcription start site region 149160
Tssr149161 17 67354524 to 67354537 13 - TSS region transcription start site region 149161
Tssr149162 17 67354542 to 67354553 11 - TSS region transcription start site region 149162
Tssr149163 17 67354922 to 67354965 43 - TSS region transcription start site region 149163
Tssr149164 17 67354991 to 67355003 12 - TSS region transcription start site region 149164
Gm36152 17 67358822 to 67359906 1084 + lncRNA gene predicted gene, 36152
Cpgi9439 17 67461037 to 67461359 322 CpG island CpG island 9439
D17Mit193 17 67499569 to 67499755 186 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 193
Tssr145611 17 67521161 to 67521167 6 + TSS region transcription start site region 145611
Gm22277 17 67551607 to 67551883 276 + unclassified non-coding RNA gene predicted gene, 22277
Gm36201 17 67559748 to 67629332 69584 - lincRNA gene predicted gene, 36201
D17Mit184 17 67566464 to 67566600 136 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 184
Tssr145612 17 67629612 to 67629622 10 + TSS region transcription start site region 145612
Lrrc30 17 67630965 to 67632723 1758 - protein coding gene leucine rich repeat containing 30
Tssr149165 17 67632484 to 67632527 43 - TSS region transcription start site region 149165
Tssr149166 17 67632640 to 67632664 24 - TSS region transcription start site region 149166
Tssr149167 17 67632671 to 67632689 18 - TSS region transcription start site region 149167
Tssr149168 17 67632707 to 67632728 21 - TSS region transcription start site region 149168
Tssr149169 17 67632730 to 67632748 18 - TSS region transcription start site region 149169
D17Mit71 17 67661467 to 67661572 105 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 71
Cpgi9440 17 67696862 to 67698088 1226 CpG island CpG island 9440
Tssr145613 17 67697227 to 67697246 19 + TSS region transcription start site region 145613
Tssr145614 17 67697253 to 67697276 23 + TSS region transcription start site region 145614
Lama1 17 67697259 to 67822647 125388 + protein coding gene laminin, alpha 1
Tssr145615 17 67722279 to 67722295 16 + TSS region transcription start site region 145615
Tssr145616 17 67722353 to 67722379 26 + TSS region transcription start site region 145616
Tssr145617 17 67728557 to 67728561 4 + TSS region transcription start site region 145617