Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:65878397-66369207

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ralbp1 17 65848415 to 65885755 37340 - protein coding gene ralA binding protein 1
Cpgi9420 17 65884014 to 65885531 1517 CpG island CpG island 9420
Tssr149084 17 65884745 to 65884754 9 - TSS region transcription start site region 149084
Tssr149085 17 65884760 to 65884778 18 - TSS region transcription start site region 149085
Tssr149086 17 65884792 to 65884888 96 - TSS region transcription start site region 149086
Tssr149087 17 65884902 to 65884937 35 - TSS region transcription start site region 149087
Tssr149088 17 65884952 to 65884963 11 - TSS region transcription start site region 149088
Tssr145584 17 65885142 to 65885157 15 + TSS region transcription start site region 145584
Tssr149089 17 65885285 to 65885301 16 - TSS region transcription start site region 149089
Gm49870 17 65885633 to 65887027 1394 + bidirectional promoter lncRNA gene predicted gene, 49870
Tssr145585 17 65886352 to 65886394 42 + TSS region transcription start site region 145585
Gm49871 17 65886420 to 65889035 2615 + lincRNA gene predicted gene, 49871
Tssr145586 17 65886468 to 65886479 11 + TSS region transcription start site region 145586
D17Mit217.3 17 65887252 to 65887409 157 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 217.3
D17Mit217 17 65887410 to 65887530 120 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 217
Gm35550 17 65912184 to 65916679 4495 + lincRNA gene predicted gene, 35550
Twsg1 17 65923065 to 65951187 28122 - protein coding gene twisted gastrulation BMP signaling modulator 1
Tssr149090 17 65923512 to 65923515 3 - TSS region transcription start site region 149090
Cpgi9421 17 65950423 to 65951622 1199 CpG island CpG island 9421
Tssr145587 17 65950990 to 65950999 9 + TSS region transcription start site region 145587
Tssr149091 17 65951127 to 65951154 27 - TSS region transcription start site region 149091
Tssr149092 17 65951156 to 65951199 43 - TSS region transcription start site region 149092
Tssr145588 17 65954122 to 65954135 13 + TSS region transcription start site region 145588
Tssr149093 17 65961476 to 65961487 11 - TSS region transcription start site region 149093
Ankrd12 17 65965703 to 66077089 111386 - protein coding gene ankyrin repeat domain 12
Tssr149094 17 65985368 to 65985406 38 - TSS region transcription start site region 149094
Tssr149095 17 65985596 to 65985617 21 - TSS region transcription start site region 149095
Tssr149096 17 65985857 to 65985872 15 - TSS region transcription start site region 149096
Tssr149097 17 65986011 to 65986024 13 - TSS region transcription start site region 149097
Tssr149098 17 65986118 to 65986130 12 - TSS region transcription start site region 149098
Tssr149099 17 65986552 to 65986580 28 - TSS region transcription start site region 149099
Tssr149100 17 65986795 to 65986813 18 - TSS region transcription start site region 149100
Tssr149101 17 65986892 to 65986902 10 - TSS region transcription start site region 149101
Tssr145589 17 66005626 to 66005648 22 + TSS region transcription start site region 145589
Tssr145590 17 66005669 to 66005682 13 + TSS region transcription start site region 145590
Tssr145591 17 66005696 to 66005717 21 + TSS region transcription start site region 145591
Gm49925 17 66005705 to 66006087 382 + pseudogene predicted gene, 49925
Tssr145592 17 66005741 to 66005754 13 + TSS region transcription start site region 145592
Cpgi9422 17 66008504 to 66008687 183 CpG island CpG island 9422
Tssr149102 17 66042562 to 66042568 6 - TSS region transcription start site region 149102
Tssr149103 17 66051634 to 66051640 6 - TSS region transcription start site region 149103
Cpgi9423 17 66075968 to 66077716 1748 CpG island CpG island 9423
5430411C19Rik 17 66076199 to 66077967 1768 unclassified gene RIKEN cDNA 5430411C19 gene
Tssr149104 17 66076812 to 66076840 28 - TSS region transcription start site region 149104
Tssr149105 17 66077033 to 66077081 48 - TSS region transcription start site region 149105
Ndufv2 17 66078795 to 66101559 22764 - protein coding gene NADH:ubiquinone oxidoreductase core subunit V2
Gm23264 17 66086094 to 66086200 106 + snRNA gene predicted gene, 23264
Gm49927 17 66094933 to 66095170 237 + pseudogene predicted gene, 49927
Cpgi9424 17 66100854 to 66101943 1089 CpG island CpG island 9424
Tssr149106 17 66101466 to 66101534 68 - TSS region transcription start site region 149106
Tssr149107 17 66101548 to 66101559 11 - TSS region transcription start site region 149107
Tssr145593 17 66101699 to 66101714 15 + TSS region transcription start site region 145593
Tssr149108 17 66102007 to 66102018 11 - TSS region transcription start site region 149108
Cpgi9425 17 66111454 to 66111936 482 CpG island CpG island 9425
Tssr149109 17 66111516 to 66111524 8 - TSS region transcription start site region 149109
Tssr145594 17 66111529 to 66111581 52 + TSS region transcription start site region 145594
Washc1 17 66111546 to 66120503 8957 + protein coding gene WASH complex subunit 1
Tssr145595 17 66111605 to 66111665 60 + TSS region transcription start site region 145595
Cpgi9426 17 66123397 to 66124207 810 CpG island CpG island 9426
Ddx11 17 66123520 to 66152174 28654 + protein coding gene DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
Tssr145596 17 66123540 to 66123582 42 + TSS region transcription start site region 145596
Tssr145597 17 66123583 to 66123594 11 + TSS region transcription start site region 145597
Tssr145598 17 66123598 to 66123617 19 + TSS region transcription start site region 145598
Tssr149110 17 66187293 to 66187311 18 - TSS region transcription start site region 149110
Gm49930 17 66187658 to 66187991 333 - pseudogene predicted gene, 49930
Tssr149111 17 66188221 to 66188224 3 - TSS region transcription start site region 149111
Gm49931 17 66188258 to 66189698 1440 + pseudogene predicted gene, 49931
Gm20742 17 66193352 to 66199820 6468 + lincRNA gene predicted gene, 20742
Tssr149112 17 66206674 to 66206714 40 - TSS region transcription start site region 149112
Tssr145599 17 66206805 to 66206833 28 + TSS region transcription start site region 145599
Tssr5190 17 66211528 to 66211534 6 + TSS region transcription start site region 5190
Gm17891 17 66227249 to 66228027 778 - pseudogene predicted gene, 17891
Gm49932 17 66231949 to 66236369 4420 - lincRNA gene predicted gene, 49932
Tssr145600 17 66233547 to 66233571 24 + TSS region transcription start site region 145600
Cpgi9427 17 66234521 to 66234759 238 CpG island CpG island 9427
Tssr145601 17 66235746 to 66235753 7 + TSS region transcription start site region 145601
Tssr149113 17 66266901 to 66266929 28 - TSS region transcription start site region 149113
Gm49933 17 66319076 to 66319512 436 - pseudogene predicted gene, 49933
Tssr149114 17 66319531 to 66319547 16 - TSS region transcription start site region 149114
Tssr5191 17 66320487 to 66320500 13 + TSS region transcription start site region 5191
Mtcl1 17 66336982 to 66449750 112768 - protein coding gene microtubule crosslinking factor 1
Cpgi9428 17 66343009 to 66343700 691 CpG island CpG island 9428
Tssr149115 17 66345416 to 66345425 9 - TSS region transcription start site region 149115
Tssr149116 17 66346550 to 66346565 15 - TSS region transcription start site region 149116
C130090I23Rik 17 66348864 to 66352964 4100 unclassified gene RIKEN cDNA C130090I23 gene
Tssr149117 17 66349668 to 66349672 4 - TSS region transcription start site region 149117
Tssr149118 17 66357720 to 66357723 3 - TSS region transcription start site region 149118
Cpgi9429 17 66357931 to 66358206 275 CpG island CpG island 9429
Cpgi9430 17 66363927 to 66364759 832 CpG island CpG island 9430
Tssr145602 17 66364591 to 66364622 31 + TSS region transcription start site region 145602