Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:65602566-65952576

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vapa 17 65580053 to 65613939 33886 - protein coding gene vesicle-associated membrane protein, associated protein A
Cpgi9417 17 65612316 to 65614370 2054 CpG island CpG island 9417
Tssr149054 17 65613486 to 65613514 28 - TSS region transcription start site region 149054
Tssr149055 17 65613521 to 65613548 27 - TSS region transcription start site region 149055
Tssr149056 17 65613864 to 65613911 47 - TSS region transcription start site region 149056
Tssr149057 17 65613922 to 65613937 15 - TSS region transcription start site region 149057
Txndc2 17 65637507 to 65642168 4661 - protein coding gene thioredoxin domain containing 2 (spermatozoa)
Tssr149058 17 65638946 to 65638950 4 - TSS region transcription start site region 149058
Tssr149059 17 65639786 to 65639799 13 - TSS region transcription start site region 149059
Tssr149060 17 65639807 to 65639817 10 - TSS region transcription start site region 149060
Tssr149061 17 65639822 to 65639839 17 - TSS region transcription start site region 149061
Tssr5189 17 65642145 to 65642152 7 - TSS region transcription start site region 5189
Tssr149062 17 65642159 to 65642182 23 - TSS region transcription start site region 149062
Tssr149063 17 65642188 to 65642206 18 - TSS region transcription start site region 149063
Tssr149064 17 65642212 to 65642223 11 - TSS region transcription start site region 149064
Gm35477 17 65642319 to 65644492 2173 + lncRNA gene predicted gene, 35477
Tssr145570 17 65642321 to 65642328 7 + TSS region transcription start site region 145570
Tssr149065 17 65643937 to 65643967 30 - TSS region transcription start site region 149065
Rab31 17 65651729 to 65772752 121023 - protein coding gene RAB31, member RAS oncogene family
Tssr149066 17 65654103 to 65654109 6 - TSS region transcription start site region 149066
Tssr149067 17 65654309 to 65654325 16 - TSS region transcription start site region 149067
Gm49867 17 65661327 to 65661578 251 - pseudogene predicted gene, 49867
Tssr149068 17 65674429 to 65674432 3 - TSS region transcription start site region 149068
Tssr149069 17 65675041 to 65675051 10 - TSS region transcription start site region 149069
Tssr149070 17 65675064 to 65675076 12 - TSS region transcription start site region 149070
Tssr149071 17 65675088 to 65675093 5 - TSS region transcription start site region 149071
Tssr149072 17 65704781 to 65704794 13 - TSS region transcription start site region 149072
Tssr145571 17 65724506 to 65724509 3 + TSS region transcription start site region 145571
Tssr149073 17 65748483 to 65748489 6 - TSS region transcription start site region 149073
Cpgi9418 17 65771975 to 65772976 1001 CpG island CpG island 9418
Tssr149074 17 65772635 to 65772650 15 - TSS region transcription start site region 149074
Tssr149075 17 65772665 to 65772676 11 - TSS region transcription start site region 149075
Tssr149076 17 65772686 to 65772695 9 - TSS region transcription start site region 149076
Tssr149077 17 65777566 to 65777576 10 - TSS region transcription start site region 149077
Cpgi9419 17 65782379 to 65784087 1708 CpG island CpG island 9419
Ppp4r1 17 65782573 to 65841926 59353 + protein coding gene protein phosphatase 4, regulatory subunit 1
Tssr145572 17 65782701 to 65782726 25 + TSS region transcription start site region 145572
Tssr145573 17 65782984 to 65783104 120 + TSS region transcription start site region 145573
Tssr145574 17 65783106 to 65783177 71 + TSS region transcription start site region 145574
Tssr145575 17 65783348 to 65783403 55 + TSS region transcription start site region 145575
Tssr145576 17 65783406 to 65783468 62 + TSS region transcription start site region 145576
4930406M16Rik 17 65783769 to 65784265 496 unclassified gene RIKEN cDNA 4930406M16 gene
Tssr145577 17 65794165 to 65794211 46 + TSS region transcription start site region 145577
Tssr145578 17 65799211 to 65799215 4 + TSS region transcription start site region 145578
Tssr145579 17 65800029 to 65800032 3 + TSS region transcription start site region 145579
Tssr145580 17 65800036 to 65800046 10 + TSS region transcription start site region 145580
Tssr145581 17 65800049 to 65800058 9 + TSS region transcription start site region 145581
Tssr145582 17 65800063 to 65800075 12 + TSS region transcription start site region 145582
Tssr145583 17 65817055 to 65817061 6 + TSS region transcription start site region 145583
Ralbp1 17 65848415 to 65885755 37340 - protein coding gene ralA binding protein 1
Tssr149078 17 65849646 to 65849657 11 - TSS region transcription start site region 149078
Tssr149079 17 65864645 to 65864672 27 - TSS region transcription start site region 149079
Tssr149080 17 65864678 to 65864697 19 - TSS region transcription start site region 149080
Tssr149081 17 65864719 to 65864735 16 - TSS region transcription start site region 149081
Tssr149082 17 65867615 to 65867650 35 - TSS region transcription start site region 149082
Tssr149083 17 65868106 to 65868128 22 - TSS region transcription start site region 149083
4631402F24Rik 17 65871397 to 65872417 1020 unclassified gene RIKEN cDNA 4631402F24 gene
Cpgi9420 17 65884014 to 65885531 1517 CpG island CpG island 9420
Tssr149084 17 65884745 to 65884754 9 - TSS region transcription start site region 149084
Tssr149085 17 65884760 to 65884778 18 - TSS region transcription start site region 149085
Tssr149086 17 65884792 to 65884888 96 - TSS region transcription start site region 149086
Tssr149087 17 65884902 to 65884937 35 - TSS region transcription start site region 149087
Tssr149088 17 65884952 to 65884963 11 - TSS region transcription start site region 149088
Tssr145584 17 65885142 to 65885157 15 + TSS region transcription start site region 145584
Tssr149089 17 65885285 to 65885301 16 - TSS region transcription start site region 149089
Gm49870 17 65885633 to 65887027 1394 + bidirectional promoter lncRNA gene predicted gene, 49870
Tssr145585 17 65886352 to 65886394 42 + TSS region transcription start site region 145585
Gm49871 17 65886420 to 65889035 2615 + lincRNA gene predicted gene, 49871
Tssr145586 17 65886468 to 65886479 11 + TSS region transcription start site region 145586
D17Mit217.3 17 65887252 to 65887409 157 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 217.3
D17Mit217 17 65887410 to 65887530 120 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 217
Gm35550 17 65912184 to 65916679 4495 + lincRNA gene predicted gene, 35550
Twsg1 17 65923065 to 65951187 28122 - protein coding gene twisted gastrulation BMP signaling modulator 1
Tssr149090 17 65923512 to 65923515 3 - TSS region transcription start site region 149090
Cpgi9421 17 65950423 to 65951622 1199 CpG island CpG island 9421
Tssr145587 17 65950990 to 65950999 9 + TSS region transcription start site region 145587
Tssr149091 17 65951127 to 65951154 27 - TSS region transcription start site region 149091
Tssr149092 17 65951156 to 65951199 43 - TSS region transcription start site region 149092