Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:65583795-66596559

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vapa 17 65580053 to 65613939 33886 - protein coding gene vesicle-associated membrane protein, associated protein A
Tssr149053 17 65594931 to 65594991 60 - TSS region transcription start site region 149053
Cpgi9417 17 65612316 to 65614370 2054 CpG island CpG island 9417
Tssr149054 17 65613486 to 65613514 28 - TSS region transcription start site region 149054
Tssr149055 17 65613521 to 65613548 27 - TSS region transcription start site region 149055
Tssr149056 17 65613864 to 65613911 47 - TSS region transcription start site region 149056
Tssr149057 17 65613922 to 65613937 15 - TSS region transcription start site region 149057
Txndc2 17 65637507 to 65642168 4661 - protein coding gene thioredoxin domain containing 2 (spermatozoa)
Tssr149058 17 65638946 to 65638950 4 - TSS region transcription start site region 149058
Tssr149059 17 65639786 to 65639799 13 - TSS region transcription start site region 149059
Tssr149060 17 65639807 to 65639817 10 - TSS region transcription start site region 149060
Tssr149061 17 65639822 to 65639839 17 - TSS region transcription start site region 149061
Tssr5189 17 65642145 to 65642152 7 - TSS region transcription start site region 5189
Tssr149062 17 65642159 to 65642182 23 - TSS region transcription start site region 149062
Tssr149063 17 65642188 to 65642206 18 - TSS region transcription start site region 149063
Tssr149064 17 65642212 to 65642223 11 - TSS region transcription start site region 149064
Gm35477 17 65642319 to 65644492 2173 + lncRNA gene predicted gene, 35477
Tssr145570 17 65642321 to 65642328 7 + TSS region transcription start site region 145570
Tssr149065 17 65643937 to 65643967 30 - TSS region transcription start site region 149065
Rab31 17 65651729 to 65772752 121023 - protein coding gene RAB31, member RAS oncogene family
Tssr149066 17 65654103 to 65654109 6 - TSS region transcription start site region 149066
Tssr149067 17 65654309 to 65654325 16 - TSS region transcription start site region 149067
Gm49867 17 65661327 to 65661578 251 - pseudogene predicted gene, 49867
Tssr149068 17 65674429 to 65674432 3 - TSS region transcription start site region 149068
Tssr149069 17 65675041 to 65675051 10 - TSS region transcription start site region 149069
Tssr149070 17 65675064 to 65675076 12 - TSS region transcription start site region 149070
Tssr149071 17 65675088 to 65675093 5 - TSS region transcription start site region 149071
Tssr149072 17 65704781 to 65704794 13 - TSS region transcription start site region 149072
Tssr145571 17 65724506 to 65724509 3 + TSS region transcription start site region 145571
Tssr149073 17 65748483 to 65748489 6 - TSS region transcription start site region 149073
Cpgi9418 17 65771975 to 65772976 1001 CpG island CpG island 9418
Tssr149074 17 65772635 to 65772650 15 - TSS region transcription start site region 149074
Tssr149075 17 65772665 to 65772676 11 - TSS region transcription start site region 149075
Tssr149076 17 65772686 to 65772695 9 - TSS region transcription start site region 149076
Tssr149077 17 65777566 to 65777576 10 - TSS region transcription start site region 149077
Cpgi9419 17 65782379 to 65784087 1708 CpG island CpG island 9419
Ppp4r1 17 65782573 to 65841926 59353 + protein coding gene protein phosphatase 4, regulatory subunit 1
Tssr145572 17 65782701 to 65782726 25 + TSS region transcription start site region 145572
Tssr145573 17 65782984 to 65783104 120 + TSS region transcription start site region 145573
Tssr145574 17 65783106 to 65783177 71 + TSS region transcription start site region 145574
Tssr145575 17 65783348 to 65783403 55 + TSS region transcription start site region 145575
Tssr145576 17 65783406 to 65783468 62 + TSS region transcription start site region 145576
4930406M16Rik 17 65783769 to 65784265 496 unclassified gene RIKEN cDNA 4930406M16 gene
Tssr145577 17 65794165 to 65794211 46 + TSS region transcription start site region 145577
Tssr145578 17 65799211 to 65799215 4 + TSS region transcription start site region 145578
Tssr145579 17 65800029 to 65800032 3 + TSS region transcription start site region 145579
Tssr145580 17 65800036 to 65800046 10 + TSS region transcription start site region 145580
Tssr145581 17 65800049 to 65800058 9 + TSS region transcription start site region 145581
Tssr145582 17 65800063 to 65800075 12 + TSS region transcription start site region 145582
Tssr145583 17 65817055 to 65817061 6 + TSS region transcription start site region 145583
Ralbp1 17 65848415 to 65885755 37340 - protein coding gene ralA binding protein 1
Tssr149078 17 65849646 to 65849657 11 - TSS region transcription start site region 149078
Tssr149079 17 65864645 to 65864672 27 - TSS region transcription start site region 149079
Tssr149080 17 65864678 to 65864697 19 - TSS region transcription start site region 149080
Tssr149081 17 65864719 to 65864735 16 - TSS region transcription start site region 149081
Tssr149082 17 65867615 to 65867650 35 - TSS region transcription start site region 149082
Tssr149083 17 65868106 to 65868128 22 - TSS region transcription start site region 149083
4631402F24Rik 17 65871397 to 65872417 1020 unclassified gene RIKEN cDNA 4631402F24 gene
Cpgi9420 17 65884014 to 65885531 1517 CpG island CpG island 9420
Tssr149084 17 65884745 to 65884754 9 - TSS region transcription start site region 149084
Tssr149085 17 65884760 to 65884778 18 - TSS region transcription start site region 149085
Tssr149086 17 65884792 to 65884888 96 - TSS region transcription start site region 149086
Tssr149087 17 65884902 to 65884937 35 - TSS region transcription start site region 149087
Tssr149088 17 65884952 to 65884963 11 - TSS region transcription start site region 149088
Tssr145584 17 65885142 to 65885157 15 + TSS region transcription start site region 145584
Tssr149089 17 65885285 to 65885301 16 - TSS region transcription start site region 149089
Gm49870 17 65885633 to 65887027 1394 + bidirectional promoter lncRNA gene predicted gene, 49870
Tssr145585 17 65886352 to 65886394 42 + TSS region transcription start site region 145585
Gm49871 17 65886420 to 65889035 2615 + lincRNA gene predicted gene, 49871
Tssr145586 17 65886468 to 65886479 11 + TSS region transcription start site region 145586
D17Mit217.3 17 65887252 to 65887409 157 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 217.3
D17Mit217 17 65887410 to 65887530 120 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 217
Gm35550 17 65912184 to 65916679 4495 + lincRNA gene predicted gene, 35550
Twsg1 17 65923065 to 65951187 28122 - protein coding gene twisted gastrulation BMP signaling modulator 1
Tssr149090 17 65923512 to 65923515 3 - TSS region transcription start site region 149090
Cpgi9421 17 65950423 to 65951622 1199 CpG island CpG island 9421
Tssr145587 17 65950990 to 65950999 9 + TSS region transcription start site region 145587
Tssr149091 17 65951127 to 65951154 27 - TSS region transcription start site region 149091
Tssr149092 17 65951156 to 65951199 43 - TSS region transcription start site region 149092
Tssr145588 17 65954122 to 65954135 13 + TSS region transcription start site region 145588
Tssr149093 17 65961476 to 65961487 11 - TSS region transcription start site region 149093
Ankrd12 17 65965703 to 66077089 111386 - protein coding gene ankyrin repeat domain 12
Tssr149094 17 65985368 to 65985406 38 - TSS region transcription start site region 149094
Tssr149095 17 65985596 to 65985617 21 - TSS region transcription start site region 149095
Tssr149096 17 65985857 to 65985872 15 - TSS region transcription start site region 149096
Tssr149097 17 65986011 to 65986024 13 - TSS region transcription start site region 149097
Tssr149098 17 65986118 to 65986130 12 - TSS region transcription start site region 149098
Tssr149099 17 65986552 to 65986580 28 - TSS region transcription start site region 149099
Tssr149100 17 65986795 to 65986813 18 - TSS region transcription start site region 149100
Tssr149101 17 65986892 to 65986902 10 - TSS region transcription start site region 149101
Tssr145589 17 66005626 to 66005648 22 + TSS region transcription start site region 145589
Tssr145590 17 66005669 to 66005682 13 + TSS region transcription start site region 145590
Tssr145591 17 66005696 to 66005717 21 + TSS region transcription start site region 145591
Gm49925 17 66005705 to 66006087 382 + pseudogene predicted gene, 49925
Tssr145592 17 66005741 to 66005754 13 + TSS region transcription start site region 145592
Cpgi9422 17 66008504 to 66008687 183 CpG island CpG island 9422
Tssr149102 17 66042562 to 66042568 6 - TSS region transcription start site region 149102
Tssr149103 17 66051634 to 66051640 6 - TSS region transcription start site region 149103
Cpgi9423 17 66075968 to 66077716 1748 CpG island CpG island 9423
5430411C19Rik 17 66076199 to 66077967 1768 unclassified gene RIKEN cDNA 5430411C19 gene
Tssr149104 17 66076812 to 66076840 28 - TSS region transcription start site region 149104
Tssr149105 17 66077033 to 66077081 48 - TSS region transcription start site region 149105
Ndufv2 17 66078795 to 66101559 22764 - protein coding gene NADH:ubiquinone oxidoreductase core subunit V2
Gm23264 17 66086094 to 66086200 106 + snRNA gene predicted gene, 23264
Gm49927 17 66094933 to 66095170 237 + pseudogene predicted gene, 49927
Cpgi9424 17 66100854 to 66101943 1089 CpG island CpG island 9424
Tssr149106 17 66101466 to 66101534 68 - TSS region transcription start site region 149106
Tssr149107 17 66101548 to 66101559 11 - TSS region transcription start site region 149107
Tssr145593 17 66101699 to 66101714 15 + TSS region transcription start site region 145593
Tssr149108 17 66102007 to 66102018 11 - TSS region transcription start site region 149108
Cpgi9425 17 66111454 to 66111936 482 CpG island CpG island 9425
Tssr149109 17 66111516 to 66111524 8 - TSS region transcription start site region 149109
Tssr145594 17 66111529 to 66111581 52 + TSS region transcription start site region 145594
Washc1 17 66111546 to 66120503 8957 + protein coding gene WASH complex subunit 1
Tssr145595 17 66111605 to 66111665 60 + TSS region transcription start site region 145595
Cpgi9426 17 66123397 to 66124207 810 CpG island CpG island 9426
Ddx11 17 66123520 to 66152174 28654 + protein coding gene DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
Tssr145596 17 66123540 to 66123582 42 + TSS region transcription start site region 145596
Tssr145597 17 66123583 to 66123594 11 + TSS region transcription start site region 145597
Tssr145598 17 66123598 to 66123617 19 + TSS region transcription start site region 145598
Tssr149110 17 66187293 to 66187311 18 - TSS region transcription start site region 149110
Gm49930 17 66187658 to 66187991 333 - pseudogene predicted gene, 49930
Tssr149111 17 66188221 to 66188224 3 - TSS region transcription start site region 149111
Gm49931 17 66188258 to 66189698 1440 + pseudogene predicted gene, 49931
Gm20742 17 66193352 to 66199820 6468 + lincRNA gene predicted gene, 20742
Tssr149112 17 66206674 to 66206714 40 - TSS region transcription start site region 149112
Tssr145599 17 66206805 to 66206833 28 + TSS region transcription start site region 145599
Tssr5190 17 66211528 to 66211534 6 + TSS region transcription start site region 5190
Gm17891 17 66227249 to 66228027 778 - pseudogene predicted gene, 17891
Gm49932 17 66231949 to 66236369 4420 - lincRNA gene predicted gene, 49932
Tssr145600 17 66233547 to 66233571 24 + TSS region transcription start site region 145600
Cpgi9427 17 66234521 to 66234759 238 CpG island CpG island 9427
Tssr145601 17 66235746 to 66235753 7 + TSS region transcription start site region 145601
Tssr149113 17 66266901 to 66266929 28 - TSS region transcription start site region 149113
Gm49933 17 66319076 to 66319512 436 - pseudogene predicted gene, 49933
Tssr149114 17 66319531 to 66319547 16 - TSS region transcription start site region 149114
Tssr5191 17 66320487 to 66320500 13 + TSS region transcription start site region 5191
Mtcl1 17 66336982 to 66449750 112768 - protein coding gene microtubule crosslinking factor 1
Cpgi9428 17 66343009 to 66343700 691 CpG island CpG island 9428
Tssr149115 17 66345416 to 66345425 9 - TSS region transcription start site region 149115
Tssr149116 17 66346550 to 66346565 15 - TSS region transcription start site region 149116
C130090I23Rik 17 66348864 to 66352964 4100 unclassified gene RIKEN cDNA C130090I23 gene
Tssr149117 17 66349668 to 66349672 4 - TSS region transcription start site region 149117
Tssr149118 17 66357720 to 66357723 3 - TSS region transcription start site region 149118
Cpgi9429 17 66357931 to 66358206 275 CpG island CpG island 9429
Cpgi9430 17 66363927 to 66364759 832 CpG island CpG island 9430
Tssr145602 17 66364591 to 66364622 31 + TSS region transcription start site region 145602
Tssr149119 17 66378893 to 66378908 15 - TSS region transcription start site region 149119
Cpgi9431 17 66379389 to 66380134 745 CpG island CpG island 9431
Tssr149120 17 66413240 to 66413241 1 - TSS region transcription start site region 149120
Gm4705 17 66413631 to 66413984 353 - pseudogene predicted gene 4705
Cpgi9432 17 66417153 to 66417328 175 CpG island CpG island 9432
Tssr149121 17 66419698 to 66419699 1 - TSS region transcription start site region 149121
Lfibq28 17 66436200 to 67505241 1069041 QTL liver fibrosis QTL 28
Cpgi9433 17 66448021 to 66450529 2508 CpG island CpG island 9433
Tssr149122 17 66449432 to 66449442 10 - TSS region transcription start site region 149122
Tssr149123 17 66449599 to 66449614 15 - TSS region transcription start site region 149123
Tssr149124 17 66449624 to 66449650 26 - TSS region transcription start site region 149124
Tssr149125 17 66449715 to 66449759 44 - TSS region transcription start site region 149125
Gm49937 17 66449854 to 66452599 2745 + bidirectional promoter lncRNA gene predicted gene, 49937
Tssr145603 17 66470736 to 66470747 11 + TSS region transcription start site region 145603
Tssr145604 17 66471955 to 66471963 8 + TSS region transcription start site region 145604
Cpgi9434 17 66479164 to 66479598 434 CpG island CpG island 9434
Tssr149126 17 66479388 to 66479407 19 - TSS region transcription start site region 149126
Tssr145605 17 66480493 to 66480543 50 + TSS region transcription start site region 145605
Tssr149127 17 66481474 to 66481487 13 - TSS region transcription start site region 149127
Tssr149128 17 66483834 to 66483840 6 - TSS region transcription start site region 149128
Tssr149129 17 66483865 to 66483876 11 - TSS region transcription start site region 149129
Tssr149130 17 66484040 to 66484052 12 - TSS region transcription start site region 149130
Tssr145606 17 66485247 to 66485306 59 + TSS region transcription start site region 145606
Tssr145607 17 66485984 to 66486022 38 + TSS region transcription start site region 145607
Rab12 17 66494512 to 66519729 25217 - protein coding gene RAB12, member RAS oncogene family
Tssr149131 17 66494698 to 66494701 3 - TSS region transcription start site region 149131
Tssr149132 17 66495455 to 66495457 2 - TSS region transcription start site region 149132
Tssr149133 17 66504208 to 66504217 9 - TSS region transcription start site region 149133
Tssr149134 17 66518049 to 66518053 4 - TSS region transcription start site region 149134
Cpgi9435 17 66518707 to 66520199 1492 CpG island CpG island 9435
Tssr145608 17 66518777 to 66518795 18 + TSS region transcription start site region 145608
Gm41608 17 66518861 to 66524531 5670 + lncRNA gene predicted gene, 41608
Tssr149135 17 66519666 to 66519727 61 - TSS region transcription start site region 149135
Tssr149136 17 66519734 to 66519746 12 - TSS region transcription start site region 149136
Gm49938 17 66532103 to 66541512 9409 + lincRNA gene predicted gene, 49938
9030409C19Rik 17 66549108 to 66551920 2812 unclassified gene RIKEN cDNA 9030409C19 gene
Themis3 17 66555252 to 66594622 39370 - protein coding gene thymocyte selection associated family member 3
Tssr149137 17 66594573 to 66594591 18 - TSS region transcription start site region 149137
Tssr149138 17 66594592 to 66594654 62 - TSS region transcription start site region 149138
Tssr149139 17 66595332 to 66595337 5 - TSS region transcription start site region 149139